build_hdf5s.sh

#!/bin/bash
# Build libh5py libraries
# Run with:
#    docker run --rm -v $PWD:/io quay.io/pypa/manylinux1_x86_64 /io/build_hdf5s.sh
# Followed by something like:
#    scp libraries/hdf5-1.8.3-x86_64.tgz nipy.bic.berkeley.edu:/home/manylinux
#    scp libraries/hdf5-1.8.16-x86_64.tgz nipy.bic.berkeley.edu:/home/manylinux
set -ex

# Manylinux, openblas version, lex_ver, Python versions
source /io/common_vars.sh

if [ -z "$HDF5_VERSIONS" ]; then
    HDF5_VERSIONS="1.8.3 1.8.16"
fi
echo "Building $HDF5_VERSIONS"

SZIP_VERSION=2.1
SZIP_URL=http://www.hdfgroup.org/ftp/lib-external/szip/
HDF5_URL=http://www.hdfgroup.org/ftp/HDF5/releases

yum install -y zlib-devel

# Build szip
curl -sLO $SZIP_URL/$SZIP_VERSION/src/szip-$SZIP_VERSION.tar.gz
tar zxf szip-$SZIP_VERSION.tar.gz
( cd szip-$SZIP_VERSION && ./configure --enable-encoding=no --prefix=/usr/local 2>/dev/null && make >2/dev/null )

for HDF5_VERSION in ${HDF5_VERSIONS}; do
    # Install szip
    ( cd szip-$SZIP_VERSION && make install 2>/dev/null )
    # Build and install hdf5
    curl -sLO $HDF5_URL/hdf5-$HDF5_VERSION/src/hdf5-$HDF5_VERSION.tar.gz
    tar zxf hdf5-$HDF5_VERSION.tar.gz
    ( cd hdf5-$HDF5_VERSION && ./configure --prefix=/usr/local --with-szlib=/usr/local 2>/dev/null && make 2>/dev/null && make install 2 >/dev/null)
    set +e  # Allow missing filenames for tar
    tar zcf $LIBRARIES/hdf5-${HDF5_VERSION}-${COMPILER_TARGET}.tgz \
        /usr/local/lib/* /usr/local/bin/*h5* /usr/local/include/* /usr/local/hdf5*
    set -e
    rm -rf /usr/local/lib/* /usr/local/bin/*h5* /usr/local/include/* /usr/local/hdf5*
done
echo "Done building $HDF5_VERSIONS"