-
Notifications
You must be signed in to change notification settings - Fork 4
/
setup.cfg
134 lines (121 loc) · 2.75 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
[bumpversion]
current_version = 0.2.2
commit = True
tag = True
parse = (?P<major>\d+)
\.(?P<minor>\d+)
\.(?P<patch>\d+)
(?P<release>[a]*)(?P<num>\d*)
serialize =
{major}.{minor}.{patch}{release}{num}
{major}.{minor}.{patch}
tag_name = {new_version}
[metadata]
name = sbmlsim
url = https://github.com/matthiaskoenig/sbmlsim
download_url = https://pypi.org/project/sbmlsim
project_urls =
Source Code = https://github.com/matthiaskoenig/sbmlsim
Documentation = https://sbmlsim.readthedocs.io
Bug Tracker = https://github.com/matthiaskoenig/sbmlsim/issues
author = Matthias Koenig
author_email = [email protected]
maintainer = Matthias Koenig
maintainer_email = [email protected]
classifiers =
Development Status :: 4 - Beta
Intended Audience :: Science/Research
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Operating System :: OS Independent
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: Implementation :: CPython
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
license = LGPL-3.0
description = sbmlsim are utilities for the simulation of SBML models.
long_description = file: README.rst
long_description_content_type = text/x-rst
keywords =
modeling
standardization
SBML
SED-ML
COMBINE
[options]
zip_safe = True
python_requires = >=3.8
install_requires =
sbmlutils>=0.8.1
numpy>=1.23.5
libroadrunner>=2.4.0
petab>=0.1.30
pypesto>=0.2.16
copasi-basico>=0.4.9
amici>=0.16.1
# -> sbmlutils (no version pin)
python-libsbml
rich
depinfo
pint
pandas
Jinja2
scipy
sympy
matplotlib
# dependencies
ray[default]>=2.3.0
xarray>=2023.4.2
h5netcdf>=1.1.0
bottleneck>=1.3.7
python-libsedml>=2.0.32
python-libnuml>=1.1.6
# biosimulators-utils>=0.1.171
psutil>=5.9.0
setproctitle>=1.2.2
xmltodict>=0.12.0
pyDOE>=0.3.8
seaborn>=0.12.2
tests_require =
tox>=3.24.3
pytest>=7.0.1
packages = find:
package_dir =
= src
include_package_data = True
[options.packages.find]
where = src
[options.extras_require]
development =
pip-tools>=6.5.1
black>=22.1.0
bump2version>=1.0.1
isort>=5.10.1
tox>=3.24.3
flake8>=4.0.1
flake8-mypy>=17.8.0
mypy>=0.931
pytest>=7.0.1
pytest-cov>=3.0.0
docs =
sphinx>=3.4.3
recommonmark
ipykernel>=5.4.3
nbsphinx>=0.8.1
sphinx_rtd_theme>=0.5.1
pypandoc>=1.5
sphinx-autoapi>=1.7.0
[bdist_wheel]
universal = 1
[bumpversion:part:release]
optional_value = placeholder
first_value = placeholder
values =
placeholder
a
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:src/sbmlsim/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"