From b034c008f9820cfd1b90c9ecef2f8fcfd5985d37 Mon Sep 17 00:00:00 2001 From: janko Date: Tue, 17 Nov 2020 15:40:45 +0100 Subject: [PATCH] Update dependencies --- NEWS.md | 15 +++++++++++++-- Project.toml | 18 +++++++++--------- 2 files changed, 22 insertions(+), 11 deletions(-) diff --git a/NEWS.md b/NEWS.md index 7165ae7..b6ccef9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,9 +1,20 @@ # master (unpublished) + +- no changes + +# v0.18.0 (latest) + +### general + - `fast_elim` flag now also exposed via `learn_network` -- fix bug that prevented combining sparse .biom data with non-numeric meta data (issue #20, thanks **@ARW-UBT** for reporting) - fixed documentation for `save_network`/`load_network` to drop outdated .tsv/.csv mention (thanks **@ARW-UBT** for reporting) +- update dependency versions + +### bug fixes + +- fix bug that prevented combining sparse .biom data with non-numeric meta data (issue #20, thanks **@ARW-UBT** for reporting) -# v0.17.0 (latest) +# v0.17.0 ### general - Julia versions < 1.2 are no longer supported; this change was necessary for the interleaved parallelism diff --git a/Project.toml b/Project.toml index 85c41cc..84692e7 100644 --- a/Project.toml +++ b/Project.toml @@ -4,7 +4,7 @@ keywords = ["metagenomics", "microbiome", "probabilistic-graphical-models", "hig license = "GPL-3.0" desc = "Inference of microbial interaction networks from large-scale heterogeneous abundance data" authors = ["Janko Tackmann "] -version = "0.17.0" +version = "0.17.1" [deps] Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" @@ -28,15 +28,15 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" [compat] Combinatorics = "0.7, 1" -DataStructures = "0.17" -Distributions = "0.21" -FileIO = "1" -HDF5 = "0.12" -JLD2 = "0.2" +DataStructures = "0.17, 0.18" +Distributions = "0.21, 0.22, 0.23, 0.24" +FileIO = "1, 1.1, 1.2, 1.3, 1.4" +HDF5 = "0.12, 0.13, 0.14" +JLD2 = "0.2, 0.3" JSON = "0.21" -LightGraphs = "1" -SimpleWeightedGraphs = "1" -StatsBase = "0.32" +LightGraphs = "1, 1.1, 1.2, 1.3" +SimpleWeightedGraphs = "1, 1.1" +StatsBase = "0.32, 0.33" julia = "1.2" [extras]