-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy pathicommands-install.sh
executable file
·280 lines (219 loc) · 7.29 KB
/
icommands-install.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
#! /bin/bash
# following instructions: https://groups.google.com/g/irod-chat/c/uOdt3pwOO7Y/m/_zPY_76zAQAJ
irods_version=4.3.1
install_prefix=$HOME/.local
lsb_release -si | grep -qi Rocky && os=RedHat && variant=el$(lsb_release -sr | cut -d"." -f1)
lsb_release -si | grep -qi ubuntu && os=ubuntu && variant=$(lsb_release -sc)
module_dir=/no-module
cleanup_dirs=yes
while test $# -gt 0 ; do
i=$1
shift
case $i in
--irods-version=*)
irods_version="${i#*=}"
;;
--irods-version)
irods_version="$1"
shift
;;
--prefix=*)
install_prefix="${i#*=}"
;;
--prefix)
install_prefix="$1"
shift
;;
--ubuntu)
os=ubuntu
;;
--el8)
os=el8
;;
--el9)
os=el9
;;
--debug)
echo debug mode
set -x
;;
--keep-build-dir)
cleanup_dirs=no
;;
*)
echo Unknown option "$i"
exit 1
;;
esac
done
function pkg_url() {
local url=$1
local suffix=$2
for i in $(seq 0 10) ; do
#echo trying $url-$i$suffix
if curl -s -I $url$i$suffix | grep "HTTP/1.1 200" > /dev/null ; then
echo $url$i$suffix
return
fi
done
echo $url
}
if [ "$variant" = noble ] ; then
#irods_version=4.3.3
variant=jammy
fi
rpm_repo=https://packages.irods.org/yum/pool/${variant}/x86_64
deb_repo=https://packages.irods.org/apt/pool/${variant}/main/i
icommands_rpm=$(pkg_url "$rpm_repo/irods-icommands-$irods_version-" ".${variant}.x86_64.rpm")
runtime_rpm=$(pkg_url "$rpm_repo/irods-runtime-$irods_version-" ".${variant}.x86_64.rpm")
externals_rpms="\
$rpm_repo/irods-externals-avro-libcxx1.11.0-3-1.0-0.${variant}.x86_64.rpm \
$rpm_repo/irods-externals-boost-libcxx1.81.0-1-1.0-0.${variant}.x86_64.rpm \
$rpm_repo/irods-externals-clang-runtime13.0.0-0-1.0-1.x86_64.rpm \
$rpm_repo/irods-externals-fmt8.1.1-0-1.0-1.x86_64.rpm \
$rpm_repo/irods-externals-zeromq4-1-libcxx4.1.8-1-1.0-0.${variant}.x86_64.rpm \
"
icommands_deb=$(pkg_url "$deb_repo/irods-icommands/irods-icommands_${irods_version}-" "~${variant}_amd64.deb")
runtime_deb=$(pkg_url "$deb_repo/irods-runtime/irods-runtime_${irods_version}-" "~${variant}_amd64.deb")
if [ "$variant" = noble ] ; then
externals_debs="\
$deb_repo/irods-externals-avro-libcxx1.11.0-3/irods-externals-avro-libcxx1.11.0-3_1.0-1~${variant}_amd64.deb \
$deb_repo/irods-externals-boost-libcxx1.81.0-1/irods-externals-boost-libcxx1.81.0-1_1.0-1~${variant}_amd64.deb \
$deb_repo/irods-externals-clang-runtime13.0.1-0/irods-externals-clang-runtime13.0.1-0_1.0-1~${variant}_amd64.deb \
$deb_repo/irods-externals-fmt8.1.1-1/irods-externals-fmt8.1.1-1_1.0-1~${variant}_amd64.deb \
$deb_repo/irods-externals-zeromq4-1-libcxx4.1.8-1/irods-externals-zeromq4-1-libcxx4.1.8-1_1.0-2~${variant}_amd64.deb \
"
else
externals_debs="\
$deb_repo/irods-externals-avro-libcxx1.11.0-3/irods-externals-avro-libcxx1.11.0-3_1.0-0~${variant}_amd64.deb \
$deb_repo/irods-externals-boost-libcxx1.81.0-1/irods-externals-boost-libcxx1.81.0-1_1.0-0~${variant}_amd64.deb \
$deb_repo/irods-externals-clang-runtime13.0.0-0/irods-externals-clang-runtime13.0.0-0_1.0~${variant}_amd64.deb \
$deb_repo/irods-externals-fmt8.1.1-0/irods-externals-fmt8.1.1-0_1.0~${variant}_amd64.deb \
$deb_repo/irods-externals-zeromq4-1-libcxx4.1.8-1/irods-externals-zeromq4-1-libcxx4.1.8-1_1.0-0~${variant}_amd64.deb
"
fi
function rpm_extract() {
rpm2cpio $1 | cpio -idm
}
function deb_extract() {
dpkg-deb --extract $1 ./
}
icommands_pkg=$icommands_rpm
runtime_pkg=$runtime_rpm
externals_pkgs=$externals_rpms
pkg_extract=rpm_extract
pkg_suffix=rpm
if [ x"$os" = xubuntu ] ; then
icommands_pkg=$icommands_deb
runtime_pkg=$runtime_deb
externals_pkgs=$externals_debs
pkg_suffix=deb
pkg_extract=deb_extract
fi
mkdir -p download
cd download
for pkg in $icommands_pkg $runtime_pkg $externals_pkgs ; do
pkgfile=$(basename $pkg)
if test ! -f $pkgfile ; then
wget -O $pkgfile $pkg
fi
done
cd ..
rm -rf dist
mkdir -p dist/lib
mkdir -p dist/bin
rm -rf extract
mkdir -p extract
cd extract
for pkg in ../download/*.$pkg_suffix ; do
$pkg_extract $pkg
done
cp -R usr/bin ../dist
cp -R usr/lib ../dist
cp -R opt/irods-externals/*/lib ../dist
cd ..
# clean some unneeded files
find dist/lib/ -name "*.a" -delete
#rm -f dist/lib/libclang.so* dist/lib/libLTO.so* lib/clang lib/cmake
mkdir -p dist/share/irods
curl -o dist/share/irods/irods_completion.bash https://raw.githubusercontent.com/irods/irods-legacy/master/iRODS/irods_completion.bash
cat > dist/share/irods/init.bash <<EOF
#! /bin/bash
if test ! -d \$HOME/.irods ; then
mkdir -p \$HOME/.irods
fi
# iRODS client config file
envfile=\$HOME/.irods/irods_environment.json
if test ! -f \$envfile ; then
# create config file
echo "Creating iRODS configuration file."
icat=icat1.mcia.fr
port=1247
zone=MCIA
username=`whoami`
if test -n "\$PS1" ; then
echo "Please answer a few questions:"
read -e -p " - iCat host? " -i \$icat icat
read -e -p " - iRODS port? " -i \$port port
read -e -p " - iRODS zone? " -i \$zone zone
read -e -p " - User name? " -i \$username username
fi
cat > \$envfile << EOF2
{
"irods_host": "\$icat",
"irods_port": \$port,
"irods_user_name": "\$username",
"irods_zone_name": "\$zone",
"irods_encryption_algorithm": "AES-256-CBC",
"irods_encryption_key_size": 32,
"irods_encryption_num_hash_rounds": 16,
"irods_encryption_salt_size": 8,
"irods_client_server_negotiation": "request_server_negotiation",
"irods_client_server_policy": "CS_NEG_REQUIRE"
}
EOF2
echo "iRODS configuration file \$envfile created"
else
echo "iRODS Configuration file \$envfile already configured"
fi
EOF
cat > dist/share/irods/relocate.sh <<EOF
#! /bin/bash
install_prefix=\$1
cat > \$install_prefix/share/irods/bashrc <<EOF2
#! /bin/bash
# iCommands environment
( echo \\\$PATH | grep -q \$install_prefix/bin ) || \
export PATH=\$install_prefix/bin:\\\$PATH
( echo \\\$LD_LIBRARY_PATH | grep -q \$install_prefix/lib ) || \
export LD_LIBRARY_PATH=\$install_prefix/lib:\\\$LD_LIBRARY_PATH
# iCommands completion
[ -f \$install_prefix/share/irods/irods_completion.bash ] && \
source \$install_prefix/share/irods/irods_completion.bash
EOF2
cat > \$install_prefix/share/irods/modulefile <<EOF2
#%Module -*- tcl -*-
##
## modulefile
##
proc ModulesHelp { } {
puts stderr "\tAdds iRODS $irods_version icommands to your environment variables,"
}
module-whatis "adds iRODS $irods_version icommands to your environment variables"
# load globus environment
# not needed
set version $irods_version
set root \$install_prefix
set bindir \\\$root/bin
set libdir \\\$root/lib
prepend-path PATH \\\$bindir
prepend-path LD_LIBRARY_PATH \\\$libdir
EOF2
EOF
chmod a+x dist/share/irods/relocate.sh
mkdir -p $install_prefix
cp -R dist/* $install_prefix
dist/share/irods/relocate.sh $install_prefix
if [ x"$cleanup_dirs" = xyes ] ; then
rm -rf download dist extract
fi