From a133ee0424d0bbb19016bca6b84bee235e8f1915 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Daniel=20G=C3=B6bel?= <d-goebel97@gmx.de>
Date: Thu, 21 Nov 2024 10:41:57 +0100
Subject: [PATCH] feature(clowm): point try-it-out parameters to test data in
 repository

---
 clowm/clowm_info.json | 41 +++++++++++++++++++++--------------------
 1 file changed, 21 insertions(+), 20 deletions(-)

diff --git a/clowm/clowm_info.json b/clowm/clowm_info.json
index 33c155ed..5c237e7e 100644
--- a/clowm/clowm_info.json
+++ b/clowm/clowm_info.json
@@ -1,22 +1,23 @@
 {
-    "inputParameters": ["input.paired.path"],
-    "outputParameters": ["output"],
-    "resourceParameters": [
-        "steps.magAttributes.gtdb.database.extractedDBPath",
-        "steps.magAttributes.checkm.database.extractedDBPath",
-        "steps.annotation.mmseqs2.kegg.database.extractedDBPath",
-        "steps.annotation.mmseqs2.vfdb.database.extractedDBPath",
-        "steps.annotation.mmseqs2.bacmet20_experimental.database.extractedDBPath",
-        "steps.annotation.mmseqs2.bacmet20_predicted.database.extractedDBPath",
-        "steps.annotation.mmseqs2.uniref90.database.extractedDBPath",
-        "steps.annotation.mmseqs2_taxonomy.gtdb.database.extractedDBPath",
-        "steps.annotation.rgi.database.extractedDBPath",
-        "steps.annotation.keggFromMMseqs2.database.extractedDBPath",
-        "steps.plasmid.ViralVerifyPlasmid.database.extractedDBPath",
-        "steps.plasmid.PLSDB.database.extractedDBPath",
-        "steps.magAttributes.checkm2.database.extractedDBPath"
-    ],
-    "exampleParameters": {
-        "input.paired.path": "https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/test_data/fullPipeline/reads_split.tsv"
-        }
+  "inputParameters": ["input.paired.path"],
+  "outputParameters": ["output"],
+  "resourceParameters": [
+    "steps.magAttributes.gtdb.database.extractedDBPath",
+    "steps.magAttributes.checkm.database.extractedDBPath",
+    "steps.annotation.mmseqs2.kegg.database.extractedDBPath",
+    "steps.annotation.mmseqs2.vfdb.database.extractedDBPath",
+    "steps.annotation.mmseqs2.bacmet20_experimental.database.extractedDBPath",
+    "steps.annotation.mmseqs2.bacmet20_predicted.database.extractedDBPath",
+    "steps.annotation.mmseqs2.uniref90.database.extractedDBPath",
+    "steps.annotation.mmseqs2_taxonomy.gtdb.database.extractedDBPath",
+    "steps.annotation.rgi.database.extractedDBPath",
+    "steps.annotation.keggFromMMseqs2.database.extractedDBPath",
+    "steps.plasmid.ViralVerifyPlasmid.database.extractedDBPath",
+    "steps.plasmid.PLSDB.database.extractedDBPath",
+    "steps.magAttributes.checkm2.database.extractedDBPath"
+  ],
+  "exampleParameters": {
+    "input.paired.path": "${projectDir}/test_data/fullPipeline/reads_split.tsv",
+    "input.ont.path": "${projectDir}/test_data/fullPipeline/ont.tsv"
+  }
 }