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Porechop Improvements #375

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pbelmann opened this issue Oct 31, 2024 · 0 comments
Open

Porechop Improvements #375

pbelmann opened this issue Oct 31, 2024 · 0 comments

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@pbelmann
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Porechop loads the fastq file into RAM, which leads to the problem that the process fails for large samples. One solution would be to chunk the input file into smaller pieces to ensure that the RAM usage remains constant. In addition, it should be checked if new adapters need to be added.
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@pbelmann