From 1362b904cac6da53f5efd0cf2a7b88d1d1176b4a Mon Sep 17 00:00:00 2001
From: Trygve Aspelien <trygveasp@met.no>
Date: Fri, 29 Nov 2024 08:22:36 +0000
Subject: [PATCH] Adapt troika config for PPI to the SGE pull request for
 troika

---
 surfexp/data/config/troika/troika_config.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/surfexp/data/config/troika/troika_config.yml b/surfexp/data/config/troika/troika_config.yml
index 60181a0..bc28a46 100644
--- a/surfexp/data/config/troika/troika_config.yml
+++ b/surfexp/data/config/troika/troika_config.yml
@@ -50,10 +50,10 @@ sites:
   ppi-rhel8:
     type: sge
     connection: local
-    kill_sequence: [[5, 2], [10, 9]]
-    pre_submit: ["create_output_dir"]
+    pre_submit: ["create_output_dir", "remove_previous_output"]
     preprocess: ["remove_top_blank_lines"]
-    qsub_command: "qsub"
+    translators: ["join_output_error"]
+    qsub_command: ["qsub", "-notify"]
     qdel_command: 'qdel'
 
   nebula: