From 2033ff614553362f736246a6f5da020514176a7d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 12 Apr 2024 04:32:35 +0000 Subject: [PATCH] Bump idna from 3.6 to 3.7 Bumps [idna](https://github.com/kjd/idna) from 3.6 to 3.7. - [Release notes](https://github.com/kjd/idna/releases) - [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst) - [Commits](https://github.com/kjd/idna/compare/v3.6...v3.7) --- updated-dependencies: - dependency-name: idna dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 74 ++++++++--------------------------------------------- 1 file changed, 10 insertions(+), 64 deletions(-) diff --git a/poetry.lock b/poetry.lock index 63f6b55e..bd9ce9f7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "adjusttext" version = "1.0.4" description = "Iteratively adjust text position in matplotlib plots to minimize overlaps" -category = "main" optional = false python-versions = "*" files = [ @@ -21,7 +20,6 @@ scipy = "*" name = "bioinfokit" version = "2.1.3" description = "Bioinformatics data analysis and visualization toolkit" -category = "main" optional = false python-versions = "*" files = [ @@ -45,28 +43,32 @@ textwrap3 = "*" name = "biopython" version = "1.83" description = "Freely available tools for computational molecular biology." -category = "main" optional = false python-versions = ">=3.8" files = [ {file = "biopython-1.83-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e2cc737906d8de47eedbc4476f711b960c16a65daa8cdd021875398c81999a09"}, + {file = "biopython-1.83-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:741abad84165e4caf0c80e485054135f51c21177e50ac6fcc502a45a6e8f7311"}, {file = "biopython-1.83-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2df408be9816dd98c28fe181ea93fb6e0d375bf1763ad9ed503ac30bb2df5b1a"}, {file = "biopython-1.83-cp310-cp310-win32.whl", hash = "sha256:a0c1c70789c7e2a26563db5ba533fb9fea0cc1f2c7bc7ad240146cb223ba44a3"}, {file = "biopython-1.83-cp310-cp310-win_amd64.whl", hash = "sha256:56f03f43c183acb88c082bc31e5f047fcc6d0aceb5270fbd29c31ab769795b86"}, {file = "biopython-1.83-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:a01dfdad7210f2fd5c4f36606278f91dbfdda6dac02347206d13cc618e79fe32"}, + {file = "biopython-1.83-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:3686ff61df3f24ecf6f23826e4fe5172c5e5f745099bc8fbb176f5304582f88f"}, {file = "biopython-1.83-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:c756c0b81702c705141c87c2805203df01c6d4cf290e8cefd48cbc61a3c85b82"}, {file = "biopython-1.83-cp311-cp311-win32.whl", hash = "sha256:0496f2a6e6e060d8ff0f34784ad15ed342b10cfe282020efe168286f0c14c479"}, {file = "biopython-1.83-cp311-cp311-win_amd64.whl", hash = "sha256:8552cc467429b555c604b84fc174c33923bf7e4c735774eda505f1d5a9c2feab"}, {file = "biopython-1.83-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:0d5ce14755a6b49dea4743cf6929570afe5becb66ad222194984c7bf04218f86"}, + {file = "biopython-1.83-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:29708772651d930e808cd24c519fd4f39b2e719668944c0aa1eaf0b1deef9f48"}, {file = "biopython-1.83-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0b35aa095de0fa8339b70664797d0e83322a1a9d512e2fd52d4e872df5189f56"}, {file = "biopython-1.83-cp312-cp312-win32.whl", hash = "sha256:118425a210cb3d184c7a78154c5646089366faf124cd46c6056ca7f9302b94ad"}, {file = "biopython-1.83-cp312-cp312-win_amd64.whl", hash = "sha256:ca94e8ea8907de841a515af55acb1922a9de99b3144c738a193f2a75e4726078"}, {file = "biopython-1.83-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:e37884fe39e4560bf5934a4ec4ba7f7fe0e7c091053d03d05b20a70557167717"}, + {file = "biopython-1.83-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:4cc011346bc8af264e3d3ea98c665b6ebe20e503f1dd50ee7e0bc913941b4c6e"}, {file = "biopython-1.83-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fd9bc6fef3f6a10043635a75e1a77c9dce877375140e81059c67c73d4ce65c4c"}, {file = "biopython-1.83-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2c3584122a5daca25b3914a32c52785b051c11518cd5e111e9e89ee04a6234fe"}, {file = "biopython-1.83-cp38-cp38-win32.whl", hash = "sha256:641c1a860705d6740eb16c6147b2b730b05a8f5974db804c14d5faa8a1446085"}, {file = "biopython-1.83-cp38-cp38-win_amd64.whl", hash = "sha256:94b68e550619e1b6e3784ed8cecb62f201d70d8b87d3a90365291f065ab42bd9"}, {file = "biopython-1.83-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:81d1e2515b380e1876720ba79dbf50f8ef3a38cc38ba5953ef61ec20d0934ee2"}, + {file = "biopython-1.83-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:30fa323694ee640978888d0c8c4f61f951d119ccec52b1dd5fe0668cfffb6648"}, {file = "biopython-1.83-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ec82350c24cdcf34a8d4a5f189d0ff7dc025658098a60e6f0e681d24b6a1414e"}, {file = "biopython-1.83-cp39-cp39-win32.whl", hash = "sha256:e914f7161b3831d7c58db33cc5c7ca64b42c9877c5a776a8313e7a5fd494f8de"}, {file = "biopython-1.83-cp39-cp39-win_amd64.whl", hash = "sha256:aae1b156a76907c2abfe9d141776b0aead65695ea914eaecdf12bd1e8991f869"}, @@ -80,7 +82,6 @@ numpy = "*" name = "biothings-client" version = "0.3.1" description = "Python Client for BioThings API services." -category = "main" optional = false python-versions = ">=2.7" files = [ @@ -100,7 +101,6 @@ jsonld = ["PyLD (>=0.7.2)"] name = "certifi" version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -112,7 +112,6 @@ files = [ name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -212,7 +211,6 @@ files = [ name = "clarabel" version = "0.6.0" description = "Clarabel Conic Interior Point Solver for Rust / Python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -234,7 +232,6 @@ scipy = "*" name = "click" version = "8.1.7" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -249,7 +246,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -261,7 +257,6 @@ files = [ name = "contourpy" version = "1.2.0" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -325,7 +320,6 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"] name = "coverage" version = "7.4.0" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -390,7 +384,6 @@ toml = ["tomli"] name = "cvxopt" version = "1.3.2" description = "Convex optimization package" -category = "main" optional = false python-versions = ">=3, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -423,7 +416,6 @@ files = [ name = "cvxpy" version = "1.4.2" description = "A domain-specific language for modeling convex optimization problems in Python." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -482,7 +474,6 @@ xpress = ["xpress"] name = "cycler" version = "0.12.1" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -498,7 +489,6 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"] name = "ecos" version = "2.0.12" description = "This is the Python package for ECOS: Embedded Cone Solver. See Github page for more information." -category = "main" optional = false python-versions = "*" files = [ @@ -528,7 +518,6 @@ scipy = ">=0.9" name = "fancyimpute" version = "0.7.0" description = "Matrix completion and feature imputation algorithms" -category = "main" optional = false python-versions = "*" files = [ @@ -547,7 +536,6 @@ scikit-learn = ">=0.24.2" name = "fonttools" version = "4.47.2" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -611,21 +599,19 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "idna" -version = "3.6" +version = "3.7" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ - {file = "idna-3.6-py3-none-any.whl", hash = "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"}, - {file = "idna-3.6.tar.gz", hash = "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca"}, + {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"}, + {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"}, ] [[package]] name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -637,7 +623,6 @@ files = [ name = "joblib" version = "1.3.2" description = "Lightweight pipelining with Python functions" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -649,7 +634,6 @@ files = [ name = "kiwisolver" version = "1.4.5" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -763,7 +747,6 @@ files = [ name = "knnimpute" version = "0.1.0" description = "k-Nearest Neighbor imputation" -category = "main" optional = false python-versions = "*" files = [ @@ -778,7 +761,6 @@ six = "*" name = "logomaker" version = "0.8" description = "Package for making Sequence Logos" -category = "main" optional = false python-versions = "*" files = [ @@ -795,7 +777,6 @@ pandas = "*" name = "lxml" version = "5.1.0" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -889,7 +870,6 @@ source = ["Cython (>=3.0.7)"] name = "matplotlib" version = "3.8.2" description = "Python plotting package" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -938,7 +918,6 @@ python-dateutil = ">=2.7" name = "matplotlib-venn" version = "0.11.9" description = "Functions for plotting area-proportional two- and three-way Venn diagrams in matplotlib." -category = "main" optional = false python-versions = "*" files = [ @@ -954,7 +933,6 @@ scipy = "*" name = "mygene" version = "3.2.2" description = "Python Client for MyGene.Info services." -category = "main" optional = false python-versions = "*" files = [ @@ -969,7 +947,6 @@ biothings-client = ">=0.2.6" name = "mypy" version = "1.8.0" description = "Optional static typing for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1016,7 +993,6 @@ reports = ["lxml"] name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1028,7 +1004,6 @@ files = [ name = "nose" version = "1.3.7" description = "nose extends unittest to make testing easier" -category = "main" optional = false python-versions = "*" files = [ @@ -1041,7 +1016,6 @@ files = [ name = "numpy" version = "1.26.3" description = "Fundamental package for array computing in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1087,7 +1061,6 @@ files = [ name = "osqp" version = "0.6.3" description = "OSQP: The Operator Splitting QP Solver" -category = "main" optional = false python-versions = "*" files = [ @@ -1127,7 +1100,6 @@ scipy = ">=0.13.2" name = "packaging" version = "23.2" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1139,7 +1111,6 @@ files = [ name = "pandas" version = "2.2.0" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1211,7 +1182,6 @@ xml = ["lxml (>=4.9.2)"] name = "panflute" version = "2.3.0" description = "Pythonic Pandoc filters" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1232,7 +1202,6 @@ pypi = ["Pygments", "docutils", "twine", "wheel"] name = "patsy" version = "0.5.6" description = "A Python package for describing statistical models and for building design matrices." -category = "main" optional = false python-versions = "*" files = [ @@ -1251,7 +1220,6 @@ test = ["pytest", "pytest-cov", "scipy"] name = "pillow" version = "10.2.0" description = "Python Imaging Library (Fork)" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1337,7 +1305,6 @@ xmp = ["defusedxml"] name = "pluggy" version = "1.3.0" description = "plugin and hook calling mechanisms for python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1353,7 +1320,6 @@ testing = ["pytest", "pytest-benchmark"] name = "pybind11" version = "2.11.1" description = "Seamless operability between C++11 and Python" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1368,7 +1334,6 @@ global = ["pybind11-global (==2.11.1)"] name = "pyparsing" version = "3.1.1" description = "pyparsing module - Classes and methods to define and execute parsing grammars" -category = "main" optional = false python-versions = ">=3.6.8" files = [ @@ -1383,7 +1348,6 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pytest" version = "7.4.4" description = "pytest: simple powerful testing with Python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1404,7 +1368,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no name = "pytest-cov" version = "4.1.0" description = "Pytest plugin for measuring coverage." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1423,7 +1386,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -1438,7 +1400,6 @@ six = ">=1.5" name = "pytz" version = "2023.3.post1" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -1450,7 +1411,6 @@ files = [ name = "pyyaml" version = "6.0.1" description = "YAML parser and emitter for Python" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1472,6 +1432,7 @@ files = [ {file = "PyYAML-6.0.1-cp311-cp311-win_amd64.whl", hash = "sha256:bf07ee2fef7014951eeb99f56f39c9bb4af143d8aa3c21b1677805985307da34"}, {file = "PyYAML-6.0.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:855fb52b0dc35af121542a76b9a84f8d1cd886ea97c84703eaa6d88e37a2ad28"}, {file = "PyYAML-6.0.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:40df9b996c2b73138957fe23a16a4f0ba614f4c0efce1e9406a184b6d07fa3a9"}, + {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a08c6f0fe150303c1c6b71ebcd7213c2858041a7e01975da3a99aed1e7a378ef"}, {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6c22bec3fbe2524cde73d7ada88f6566758a8f7227bfbf93a408a9d86bcc12a0"}, {file = "PyYAML-6.0.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:8d4e9c88387b0f5c7d5f281e55304de64cf7f9c0021a3525bd3b1c542da3b0e4"}, {file = "PyYAML-6.0.1-cp312-cp312-win32.whl", hash = "sha256:d483d2cdf104e7c9fa60c544d92981f12ad66a457afae824d146093b8c294c54"}, @@ -1510,7 +1471,6 @@ files = [ name = "qdldl" version = "0.1.7.post0" description = "QDLDL, a free LDL factorization routine." -category = "main" optional = false python-versions = "*" files = [ @@ -1543,7 +1503,6 @@ scipy = ">=0.13.2" name = "requests" version = "2.31.0" description = "Python HTTP for Humans." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1565,7 +1524,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "scikit-learn" version = "1.4.0" description = "A set of python modules for machine learning and data mining" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1628,7 +1586,6 @@ tests = ["black (>=23.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.3)", "numpydoc ( name = "scipy" version = "1.12.0" description = "Fundamental algorithms for scientific computing in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1671,7 +1628,6 @@ test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", name = "scs" version = "3.2.4.post1" description = "Splitting conic solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1705,7 +1661,6 @@ scipy = "*" name = "seaborn" version = "0.13.1" description = "Statistical data visualization" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1727,7 +1682,6 @@ stats = ["scipy (>=1.7)", "statsmodels (>=0.12)"] name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -1739,7 +1693,6 @@ files = [ name = "statsmodels" version = "0.14.1" description = "Statistical computations and models for Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1790,7 +1743,6 @@ docs = ["ipykernel", "jupyter-client", "matplotlib", "nbconvert", "nbformat", "n name = "svgutils" version = "0.3.4" description = "Python SVG editor" -category = "main" optional = false python-versions = "*" files = [ @@ -1805,7 +1757,6 @@ lxml = "*" name = "tabulate" version = "0.9.0" description = "Pretty-print tabular data" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1820,7 +1771,6 @@ widechars = ["wcwidth"] name = "textwrap3" version = "0.9.2" description = "textwrap from Python 3.6 backport (plus a few tweaks)" -category = "main" optional = false python-versions = "*" files = [ @@ -1832,7 +1782,6 @@ files = [ name = "threadpoolctl" version = "3.2.0" description = "threadpoolctl" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1844,7 +1793,6 @@ files = [ name = "typing-extensions" version = "4.9.0" description = "Backported and Experimental Type Hints for Python 3.8+" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1856,7 +1804,6 @@ files = [ name = "tzdata" version = "2023.4" description = "Provider of IANA time zone data" -category = "main" optional = false python-versions = ">=2" files = [ @@ -1868,7 +1815,6 @@ files = [ name = "urllib3" version = "2.1.0" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=3.8" files = [