Array<T> clean up

.github/workflows/test_with_MFEM_master.yml

@@ -18,22 +18,21 @@ jobs:
       matrix:
         python-version: ["3.7", "3.8", "3.9", "3.10"]
         #python-version: ["3.10"]
-        #os: [ubuntu-latest]
         os: [ubuntu-20.04]
         # USE_FLAGS :  cuda, parallel, libceed
         env:
            - { USE_FLAGS: "000"}
-           - { USE_FLAGS: "100"}
-           - { USE_FLAGS: "010"}
-           - { USE_FLAGS: "110"}
+#          - { USE_FLAGS: "100"}
+#          - { USE_FLAGS: "010"}
+#          - { USE_FLAGS: "110"}
 
         include:
            - os: macos-latest
              python-version: 3.9
              env: {USE_FLAGS: "000"}
-           - os: [ubuntu-20.04]
-             python-version: 3.9
-             env: {USE_FLAGS: "001"}
+#           - os: [ubuntu-20.04]
+#             python-version: 3.9
+#             env: {USE_FLAGS: "001"}
 #
     runs-on: ${{ matrix.os }}      
     #env: ${{ matrix.env }}
@@ -65,9 +64,10 @@ jobs:
         pip install six numpy --verbose 
         if [ "${{matrix.python-version}}" = "3.10" ] ; then
             pip install numba numba-scipy --verbose
-            #pip install scipy
+            #pip install scipy numba --verbose
         else
             pip install numba numba-scipy --verbose
+            #pip install numba scipy --verbose
         fi
 
         if [ -f requirements.txt ]; then

.gitignore

@@ -14,5 +14,7 @@ test/*
 !test/*.py
 !test/cpp
 !test/cpp/
+!test/issues/*.py
+!test/issues/data_3960/VisIt_volume
 *.egg-info
 *.py#

data/fichera-mixed.mesh

@@ -0,0 +1,96 @@
+MFEM mesh v1.0
+
+#
+# MFEM Geometry Types (see mesh/geom.hpp):
+#
+# POINT       = 0
+# SEGMENT     = 1
+# TRIANGLE    = 2
+# SQUARE      = 3
+# TETRAHEDRON = 4
+# CUBE        = 5
+# PRISM       = 6
+#
+
+dimension
+3
+
+elements
+14
+1 4 13 15 21 25
+1 4 12 13 15 21
+1 4 13 21 22 25
+1 4 15 24 21 25
+1 4 13 15 25 16
+1 5  0  1  4  3  9 10 13 12
+1 5  8  9 12 11 17 18 21 20
+1 5  2  3  6  5 11 12 15 14
+1 6  3  4  6 12 13 15
+1 6  4  7  6 13 16 15
+1 6 12 13 21  9 10 18
+1 6 13 22 21 10 19 18
+1 6 11 14 20 12 15 21
+1 6 15 21 24 14 20 23
+
+boundary
+30
+ 1 3  5  6  3  2
+ 2 2  3  6  4
+ 2 2  4  6  7
+ 3 3  3  4  1  0
+ 4 3 11 12  9  8
+ 5 3  2  3 12 11
+ 6 3  0  1 10  9
+ 7 2  9 10 18
+ 7 2 10 19 18
+ 8 3  8  9 18 17
+ 9 3  1  4 13 10
+10 3  4  7 16 13
+11 2 13 16 25
+11 2 13 25 22
+12 3 10 13 22 19
+13 3  7  6 15 16
+14 3  6  5 14 15
+15 3 15 14 23 24
+16 2 16 15 25
+16 2 15 24 25
+17 3  5  2 11 14
+18 3  3  0  9 12
+19 3 11  8 17 20
+20 2 11 20 14
+20 2 14 20 23
+21 3 17 18 21 20
+22 3 18 19 22 21
+23 2 21 22 25
+23 2 21 25 24
+24 3 20 21 24 23
+
+vertices
+26
+3
+0 -1 -1
+1 -1 -1
+-1 0 -1
+0 0 -1
+1 0 -1
+-1 1 -1
+0 1 -1
+1 1 -1
+-1 -1 0
+0 -1 0
+1 -1 0
+-1 0 0
+0 0 0
+1 0 0
+-1 1 0
+0 1 0
+1 1 0
+-1 -1 1
+0 -1 1
+1 -1 1
+-1 0 1
+0 0 1
+1 0 1
+-1 1 1
+0 1 1
+1 1 1

examples/ex18.py

@@ -171,7 +171,7 @@ def run(problem=1,
     # 10. Compute the L2 solution error summed for all components.
     if (t_final == 2.0):
         error = sol.ComputeLpError(2., u0)
-        print("Solution error: " + str(error))
+        print("Solution error: " + "{:g}".format(error))
 
 
 if __name__ == "__main__":

examples/ex18_common.py

@@ -116,7 +116,7 @@ def Mult(self, x, y):
             y.SetSubVector(vdofs, ymat.GetData())
 
 
-class DomainIntegrator(mfem.BilinearFormIntegrator):
+class DomainIntegrator(mfem.PyBilinearFormIntegrator):
     def __init__(self, dim):
         num_equation = globals()['num_equation']
         self.flux = mfem.DenseMatrix(num_equation, dim)
@@ -165,7 +165,7 @@ def AssembleElementMatrix2(self, trial_fe, test_fe, Tr, elmat):
                             self.dshapedx[j, d]
 
 
-class FaceIntegrator(mfem.NonlinearFormIntegrator):
+class FaceIntegrator(mfem.PyNonlinearFormIntegrator):
     def __init__(self, rsolver, dim):
         self.rsolver = rsolver
         self.shape1 = mfem.Vector()

examples/ex23.py

@@ -199,7 +199,7 @@ def EvalValue(self, x):
             visualization = False
             print("GLVis visualization disabled.")
         else:
-            sout.precision(precision)
+            sout.precision(output.precision)
             sout << "solution\n" << mesh << dudt_gf
             sout << "pause\n"
             sout.flush()

examples/ex33p.py

@@ -1,5 +1,5 @@
 '''
-   MFEM example 33
+   MFEM example 33p
 
    See c++ version in the MFEM library for more detail