_pkgdown.yml

home:
  title: mapspamc
  description: R package to create crop distribution maps.

url: https://michielvandijk.github.io/mapspamc/
template:
#  bootstrap: 5
  bootswatch: lux

navbar:
  structure:
    left:
    - home
    - installation
    - articles
    - reference
    - news
    right: github
  components:
    home:
      icon: fas fa-home fa-lg
      href: index.html
    installation:
      text: Installation
      href: articles/installation.html
    articles:
      text: Articles
      menu:
      - text: Background
        menu:
        - text: Crop distribution maps
          href: articles/crop_distribution_maps.html
        - text: Model description
          href: articles/model_description.html
        - text: Input data
          href: articles/input_data.html
        - text: Country examples
          href: articles/country_examples.html
        - text: Appendix
          href: articles/appendix.html
      - text: Run mapspamc
        menu:
        - text: Design and process flow
          href: articles/design.html
        - text: 1. Model setup
          href: articles/model_setup.html
        - text: 2.1. Pre-processing - subnational statistics
          href: articles/preprocessing_subnational_statistics.html
        - text: 2.2. Pre-processing - spatial data
          href: articles/preprocessing_spatial_data.html
        - text: 2.3. Pre-processing - cropland
          href: articles/preprocessing_cropland.html
        - text: 2.4. Pre-processing - irrigated area
          href: articles/preprocessing_irrigated_area.html
        - text: 3. Model preparation
          href: articles/model_preparation.html
        - text: 4. Run model
          href: articles/run_model.html
        - text: 5. Post-processing
          href: articles/postprocessing.html
        - text: 6. Model validation
          href: articles/model_validation.html
    reference:
      text: Functions
      href: reference/index.html
    news:
      text: Changelog
      href: news/index.html
    github:
      icon: fab fa-github fa-lg
      href: https://github.com/michielvandijk/mapspamc

reference:
- title: "Model setup"
- contents:
  - create_adm_map_pdf
  - create_adm_list
  - create_grid
  - create_folders
  - create_model_template
  - mapspamc_par
  - rasterize_adm_map
- title: "Pre-processing"
- contents:
  - align_raster
  - check_statistics
  - create_statistics_template
  - reaggregate_statistics
- title: "Model preparation"
- contents:
  - combine_inputs
  - harmonize_inputs
  - prepare_cropland
  - prepare_irrigated_area
  - prepare_physical_area
  - prepare_priors_and_scores
- title: "Running the model"
- contents:
  - combine_results
  - run_mapspamc
  - view_results
- title: "Post-processing"
- contents:
  - create_all_tif
- title: "Model validation"
- contents:
  - aggregate_to_adm
- title: "General"
- contents:
  - load_data