DESCRIPTION

Package: miaSim
Type: Package
Version: 1.9.1
Authors@R:
     c(person(given = "Yagmur", family = "Simsek", role = c("cre", "aut"),
              email = "yagmur.simsek.98@gmail.com"),
       person(given = "Karoline", family = "Faust", role = c("aut"),
              email = "karoline.faust@kuleuven.be"),
       person(given = "Yu", family = "Gao", role = c("aut"),
              email = "gaoyu19920914@gmail.com"),
       person(given = "Emma", family = "Gheysen", role = c("aut"),
              email = "emma.gheysen@student.kuleuven.be"),
       person(given = "Daniel Rios", family = "Garza", role = c("aut"),
              email = "danielrios.garza@kuleuven.be"),
       person(given = "Tuomas", family = "Borman", role = c("aut"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")),
       person(given = "Leo", family = "Lahti", role = c("aut"),
              email = "leo.lahti@iki.fi",
              comment = c(ORCID = "0000-0001-5537-637X")),
       person(given = "Muluh", family = "Muluh", role=c("ctb")),
       person(given = "Nitesh", family = "Turaga", role=c("ctb")),
       person(given = "Akewak", family = "Jeba", role=c("ctb"))
      )
Title: Microbiome Data Simulation
Description:
    Microbiome time series simulation with generalized Lotka-Volterra model,
    Self-Organized Instability (SOI), and other models. Hubbell's Neutral model
    is used to determine the abundance matrix. The resulting abundance matrix
    is applied to (Tree)SummarizedExperiment objects.
License: Artistic-2.0 | file LICENSE
biocViews: Microbiome, Software, Sequencing, DNASeq, ATACSeq, Coverage, Network
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends:
    TreeSummarizedExperiment    
Imports:
    SummarizedExperiment,
    deSolve,
    stats,
    poweRlaw,
    MatrixGenerics,
    S4Vectors
Suggests:
    ape,
    cluster,
    foreach,
    doParallel,
    dplyr,
    GGally,
    ggplot2,
    igraph,
    network,
    reshape2,
    sna,
    vegan,
    rmarkdown,
    knitr,
    BiocStyle,
    testthat,
    mia,
    miaViz,
    colourvalues,
    philentropy
URL: https://github.com/microbiome/miaSim
BugReports: https://github.com/microbiome/miaSim/issues
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr