From 6fb178ff131b9a55b7f6e28bf923491f9eaced6f Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Fri, 2 Jun 2023 10:42:55 -0700 Subject: [PATCH 01/13] init commit to add the AUC chart --- libs/core-ui/src/index.ts | 1 + libs/core-ui/src/lib/components/AUCChart.tsx | 56 +++++++++++++++++++ .../src/lib/util/getAUCChartOptions.ts | 52 +++++++++++++++++ .../ModelPerformanceTab.tsx | 2 + 4 files changed, 111 insertions(+) create mode 100644 libs/core-ui/src/lib/components/AUCChart.tsx create mode 100644 libs/core-ui/src/lib/util/getAUCChartOptions.ts diff --git a/libs/core-ui/src/index.ts b/libs/core-ui/src/index.ts index c67e37bb25..99e62e1fe9 100644 --- a/libs/core-ui/src/index.ts +++ b/libs/core-ui/src/index.ts @@ -68,6 +68,7 @@ export * from "./lib/util/TelemetryEventName"; export * from "./lib/util/generateDefaultChartAxes"; export * from "./lib/util/datasetUtils/getColumnRanges"; export * from "./lib/components/Announce"; +export * from "./lib/components/AUCChart"; export * from "./lib/components/OverallMetricChart"; export * from "./lib/components/AxisConfig"; export * from "./lib/components/AxisConfigDialog"; diff --git a/libs/core-ui/src/lib/components/AUCChart.tsx b/libs/core-ui/src/lib/components/AUCChart.tsx new file mode 100644 index 0000000000..16627e96e0 --- /dev/null +++ b/libs/core-ui/src/lib/components/AUCChart.tsx @@ -0,0 +1,56 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +import { getTheme } from "@fluentui/react"; +import { SeriesOptionsType } from "highcharts"; +import React from "react"; + +import { + ModelAssessmentContext, + defaultModelAssessmentContext +} from "../Context/ModelAssessmentContext"; +import { BasicHighChart } from "../Highchart/BasicHighChart"; +import { getAUCChartOptions } from "../util/getAUCChartOptions"; +import { ITelemetryEvent } from "../util/ITelemetryEvent"; + +interface IAUCChartProps { + telemetryHook?: (message: ITelemetryEvent) => void; +} + +export class AUCChart extends React.PureComponent { + public static contextType = ModelAssessmentContext; + public context: React.ContextType = + defaultModelAssessmentContext; + + public render(): React.ReactNode { + const theme = getTheme(); + const plotData = getAUCChartOptions(this.getStaticROCData(), theme); + return ( + + ); + } + + private getStaticROCData(): SeriesOptionsType[] { + return [ + { + data: [ + { x: 0, y: 0 }, + { x: 0, y: 1 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Ideal", + type: "line" + }, + { + data: [ + { x: 0, y: 0 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Random", + type: "line" + } + ]; + } +} diff --git a/libs/core-ui/src/lib/util/getAUCChartOptions.ts b/libs/core-ui/src/lib/util/getAUCChartOptions.ts new file mode 100644 index 0000000000..8bb0d77e37 --- /dev/null +++ b/libs/core-ui/src/lib/util/getAUCChartOptions.ts @@ -0,0 +1,52 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +import { ITheme } from "@fluentui/react"; +import { SeriesOptionsType } from "highcharts"; + +import { IHighchartsConfig } from "../Highchart/IHighchartsConfig"; + +export function getAUCChartOptions( + data: SeriesOptionsType[], + theme?: ITheme +): IHighchartsConfig { + // Open questions: + // 1. select cohort ? + const colorTheme = { + axisColor: theme?.palette.neutralPrimary, + axisGridColor: theme?.palette.neutralLight, + backgroundColor: theme?.semanticColors.bodyBackground, + fontColor: theme?.semanticColors.bodyText + }; + return { + chart: { + backgroundColor: colorTheme.backgroundColor, + type: "scatter", + zoomType: "xy" + }, + custom: { + disableUpdate: true + }, + series: data, + title: { + // TODO: localize + text: "AUC" + }, + xAxis: { + max: 1.05, + min: -0.05, + title: { + // TODO: localize + text: "False Positive Rate" + } + }, + yAxis: { + max: 1.05, + min: -0.05, + title: { + // TODO: localize + text: "True Positive Rate" + } + } + }; +} diff --git a/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx b/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx index 54a3ce7161..9f46400d26 100644 --- a/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx +++ b/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx @@ -3,6 +3,7 @@ import { Text } from "@fluentui/react"; import { + AUCChart, MissingParametersPlaceholder, defaultModelAssessmentContext, ModelAssessmentContext, @@ -38,6 +39,7 @@ export class ModelPerformanceTab extends React.PureComponent + ); } From d30c5d4fdb75df8ba4d5906473890897545ee61e Mon Sep 17 00:00:00 2001 From: hawestra <42190563+hawestra@users.noreply.github.com> Date: Thu, 15 Jun 2023 12:53:10 -0700 Subject: [PATCH 02/13] init commit --- libs/core-ui/src/index.ts | 2 +- libs/core-ui/src/lib/Interfaces/IAUCData.ts | 7 + libs/core-ui/src/lib/components/AUCChart.tsx | 56 - libs/core-ui/src/lib/util/calculateAUCData.ts | 56 + libs/core-ui/tsconfig.lib.json | 2 +- .../ModelPerformanceTab.tsx | 2 - libs/localization/src/lib/en.json | 1 + .../Controls/ModelOverview/AUCChart.tsx | 93 + .../ModelOverview/ModelOverviewChartPivot.tsx | 13 + .../ModelOverview}/getAUCChartOptions.ts | 2 +- yarn.lock | 32166 ++++++++-------- 11 files changed, 15967 insertions(+), 16433 deletions(-) create mode 100644 libs/core-ui/src/lib/Interfaces/IAUCData.ts delete mode 100644 libs/core-ui/src/lib/components/AUCChart.tsx create mode 100644 libs/core-ui/src/lib/util/calculateAUCData.ts create mode 100644 libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx rename libs/{core-ui/src/lib/util => model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview}/getAUCChartOptions.ts (94%) diff --git a/libs/core-ui/src/index.ts b/libs/core-ui/src/index.ts index 8d20f6c67b..f2fbbf1432 100644 --- a/libs/core-ui/src/index.ts +++ b/libs/core-ui/src/index.ts @@ -53,6 +53,7 @@ export * from "./lib/util/getCommonStyles"; export * from "./lib/util/getCompositeFilterString"; export * from "./lib/util/getFeatureOptions"; export * from "./lib/util/getFilterBoundsArgs"; +export * from "./lib/util/calculateAUCData"; export * from "./lib/util/calculateBoxData"; export * from "./lib/util/calculateConfusionMatrixData"; export * from "./lib/util/calculateLineData"; @@ -67,7 +68,6 @@ export * from "./lib/util/TelemetryEventName"; export * from "./lib/util/generateDefaultChartAxes"; export * from "./lib/util/datasetUtils/getColumnRanges"; export * from "./lib/components/Announce"; -export * from "./lib/components/AUCChart"; export * from "./lib/components/OverallMetricChart"; export * from "./lib/components/AxisConfig"; export * from "./lib/components/AxisConfigDialog"; diff --git a/libs/core-ui/src/lib/Interfaces/IAUCData.ts b/libs/core-ui/src/lib/Interfaces/IAUCData.ts new file mode 100644 index 0000000000..740d5e51bd --- /dev/null +++ b/libs/core-ui/src/lib/Interfaces/IAUCData.ts @@ -0,0 +1,7 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +export interface IAUCData { + AUCData: number[][]; + selectedLabels: string[]; +} diff --git a/libs/core-ui/src/lib/components/AUCChart.tsx b/libs/core-ui/src/lib/components/AUCChart.tsx deleted file mode 100644 index 16627e96e0..0000000000 --- a/libs/core-ui/src/lib/components/AUCChart.tsx +++ /dev/null @@ -1,56 +0,0 @@ -// Copyright (c) Microsoft Corporation. -// Licensed under the MIT License. - -import { getTheme } from "@fluentui/react"; -import { SeriesOptionsType } from "highcharts"; -import React from "react"; - -import { - ModelAssessmentContext, - defaultModelAssessmentContext -} from "../Context/ModelAssessmentContext"; -import { BasicHighChart } from "../Highchart/BasicHighChart"; -import { getAUCChartOptions } from "../util/getAUCChartOptions"; -import { ITelemetryEvent } from "../util/ITelemetryEvent"; - -interface IAUCChartProps { - telemetryHook?: (message: ITelemetryEvent) => void; -} - -export class AUCChart extends React.PureComponent { - public static contextType = ModelAssessmentContext; - public context: React.ContextType = - defaultModelAssessmentContext; - - public render(): React.ReactNode { - const theme = getTheme(); - const plotData = getAUCChartOptions(this.getStaticROCData(), theme); - return ( - - ); - } - - private getStaticROCData(): SeriesOptionsType[] { - return [ - { - data: [ - { x: 0, y: 0 }, - { x: 0, y: 1 }, - { x: 1, y: 1 } - ], - // TODO: localize - name: "Ideal", - type: "line" - }, - { - data: [ - { x: 0, y: 0 }, - { x: 1, y: 1 } - ], - // TODO: localize - name: "Random", - type: "line" - } - ]; - } -} diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts new file mode 100644 index 0000000000..3ad7c27cac --- /dev/null +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -0,0 +1,56 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +import { IAUCData } from "../Interfaces/IAUCData"; + +export function calculateAUCData( + yTrue: number[], + yPred: number[], + allLabels: string[] +): IAUCData | undefined { + if ( + yTrue.length !== yPred.length || + !yTrue.concat(yPred).every((el) => el < allLabels.length) + ) { + return undefined; + } + // false positive rate is x + // true positive rate is y + // https://github.com/scikit-learn/scikit-learn/blob/2a2772a87b6c772dc3b8292bcffb990ce27515a8/sklearn/metrics/_ranking.py#L50 + + // use ROC to get fpr and tpr + // https://github.com/scikit-learn/scikit-learn/blob/2a2772a87b6c772dc3b8292bcffb990ce27515a8/sklearn/metrics/_ranking.py#L933 + + // const selectedLabelSet = new Set( + // selectedLabels !== undefined ? selectedLabels : allLabels + // ); + + const labelMap = new Map(); + + // Inspired from sklearn + // https://github.com/scikit-learn/scikit-learn/blob/8694eb00f8a3c0dede331fe60c0415bfaafef631/sklearn/metrics/_classification.py#L335 + // let idx = 0; + // allLabels.forEach((element, index) => { + // if (selectedLabelSet.has(element)) { + // labelMap.set(index, idx); + // idx += 1; + // } + // }); + + const data: number[][] = new Array(labelMap.size) + .fill(0) + .map(() => new Array(labelMap.size).fill(0)); + + yTrue.forEach((element, index) => { + const trueIdx = labelMap.get(element); + const predIdx = labelMap.get(yPred[index]); + if (trueIdx !== undefined && predIdx !== undefined) { + data[trueIdx][predIdx] += 1; + } + }); + + return { + AUCData: data, + selectedLabels: [...labelMap.keys()].map((idx) => allLabels[idx]) + }; +} diff --git a/libs/core-ui/tsconfig.lib.json b/libs/core-ui/tsconfig.lib.json index 50e3b3a526..cad4e5e98f 100644 --- a/libs/core-ui/tsconfig.lib.json +++ b/libs/core-ui/tsconfig.lib.json @@ -9,5 +9,5 @@ "../../node_modules/@nrwl/react/typings/image.d.ts" ], "exclude": ["**/*.spec.ts", "**/*.spec.tsx", "**/*.test.ts", "**/*.test.tsx"], - "include": ["**/*.js", "**/*.jsx", "**/*.ts", "**/*.tsx"] + "include": ["**/*.js", "**/*.jsx", "**/*.ts", "**/*.tsx", "../model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx", "../model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/getAUCChartOptions.ts"] } diff --git a/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx b/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx index 9f46400d26..54a3ce7161 100644 --- a/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx +++ b/libs/interpret/src/lib/MLIDashboard/Controls/ModelPerformanceTab/ModelPerformanceTab.tsx @@ -3,7 +3,6 @@ import { Text } from "@fluentui/react"; import { - AUCChart, MissingParametersPlaceholder, defaultModelAssessmentContext, ModelAssessmentContext, @@ -39,7 +38,6 @@ export class ModelPerformanceTab extends React.PureComponent - ); } diff --git a/libs/localization/src/lib/en.json b/libs/localization/src/lib/en.json index b989033208..ae91352527 100644 --- a/libs/localization/src/lib/en.json +++ b/libs/localization/src/lib/en.json @@ -1818,6 +1818,7 @@ "regressionDistributionPivotItem": "Target distribution", "metricsVisualizationsPivotItem": "Metrics visualizations", "confusionMatrixPivotItem": "Confusion matrix", + "AUCPivotItem": "AUC Chart", "disaggregatedAnalysisFeatureSelectionPlaceholder": "Select features to generate the feature-based analysis.", "tableCountTooltip": "Cohort {0} contains {1} instances.", "tableMetricTooltip": "The model's {0} on cohort {1} is {2}", diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx new file mode 100644 index 0000000000..0170c07540 --- /dev/null +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -0,0 +1,93 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +import { getTheme } from "@fluentui/react"; +import { PointOptionsObject, SeriesOptionsType } from "highcharts"; +import React from "react"; + +import { + ModelAssessmentContext, + defaultModelAssessmentContext +} from "../../../../../../core-ui/src/lib/Context/ModelAssessmentContext"; +import { BasicHighChart } from "../../../../../../core-ui/src/lib/Highchart/BasicHighChart"; +import { getAUCChartOptions } from "./getAUCChartOptions"; +import { ITelemetryEvent } from "../../../../../../core-ui/src/lib/util/ITelemetryEvent"; +// import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; +import { JointDataset, calculateAUCData } from "@responsible-ai/core-ui"; + +interface IAUCChartProps { + telemetryHook?: (message: ITelemetryEvent) => void; +} + +export class AUCChart extends React.PureComponent { + public static contextType = ModelAssessmentContext; + public context: React.ContextType = + defaultModelAssessmentContext; + + public render(): React.ReactNode { + const theme = getTheme(); + // const classNames = modelOverviewChartStyles(); + const plotData = getAUCChartOptions(this.getStaticROCData(), theme); + + if ( + this.context.dataset.predicted_y === undefined || + this.context.dataset.true_y === undefined + ) { + return React.Fragment; + } + const yLength = this.context.dataset.predicted_y.length; + if (this.context.dataset.true_y.length !== yLength) { + return React.Fragment; + } + + // TODO: select cohort from dropdown like confusion matrix + let selectedCohort = this.context.baseErrorCohort; + const AUCData = calculateAUCData( + selectedCohort.cohort.unwrap(JointDataset.TrueYLabel), + selectedCohort.cohort.unwrap(JointDataset.PredictedYLabel), + [] + ); + const AUCPoints: PointOptionsObject[] = []; + const selectedLabels: string[] = []; + AUCData?.AUCData.forEach((row, rowIdx) => + row.forEach((count, colIdx) => { + AUCPoints.push({ + value: count, + x: colIdx, + y: rowIdx + }); + }) + ); + if (AUCData) { + selectedLabels.push(...AUCData.selectedLabels); + } + + return ( + + ); + } + + private getStaticROCData(): SeriesOptionsType[] { + return [ + { + data: [ + { x: 0, y: 0 }, + { x: 0, y: 1 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Ideal", + type: "line" + }, + { + data: [ + { x: 0, y: 0 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Random", + type: "line" + } + ]; + } +} diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index 3e57a02eb5..c258090b7d 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -25,6 +25,7 @@ import { ModelOverviewMetricChart } from "./ModelOverviewMetricChart"; import { ProbabilityDistributionChart } from "./ProbabilityDistributionChart"; import { RegressionDistributionChart } from "./RegressionDistributionChart"; import { getSelectableMetrics } from "./StatsTableUtils"; +import { AUCChart } from "./AUCChart"; interface IModelOverviewChartPivotProps { allCohorts: ErrorCohort[]; @@ -121,6 +122,7 @@ export class ModelOverviewChartPivot extends React.Component< return element.text; }) ); + console.log(this.props.selectedMetrics); return ( )} + {!ifEnableLargeData(this.context.dataset) && + (IsBinary(this.context.modelMetadata.modelType) || + IsMulticlass(this.context.modelMetadata.modelType)) && ( + + + + )} ); } diff --git a/libs/core-ui/src/lib/util/getAUCChartOptions.ts b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/getAUCChartOptions.ts similarity index 94% rename from libs/core-ui/src/lib/util/getAUCChartOptions.ts rename to libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/getAUCChartOptions.ts index 8bb0d77e37..924037e660 100644 --- a/libs/core-ui/src/lib/util/getAUCChartOptions.ts +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/getAUCChartOptions.ts @@ -4,7 +4,7 @@ import { ITheme } from "@fluentui/react"; import { SeriesOptionsType } from "highcharts"; -import { IHighchartsConfig } from "../Highchart/IHighchartsConfig"; +import { IHighchartsConfig } from "@responsible-ai/core-ui"; export function getAUCChartOptions( data: SeriesOptionsType[], diff --git a/yarn.lock b/yarn.lock index a34c218aba..8956ea27ed 100644 --- a/yarn.lock +++ b/yarn.lock @@ -2,55 +2,59 @@ # yarn lockfile v1 +"3d-view@^2.0.0": + version "2.0.0" + resolved 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--git a/libs/core-ui/src/lib/util/StatisticsUtils.ts b/libs/core-ui/src/lib/util/StatisticsUtils.ts index 5725984d0c..f53f116bfa 100644 --- a/libs/core-ui/src/lib/util/StatisticsUtils.ts +++ b/libs/core-ui/src/lib/util/StatisticsUtils.ts @@ -245,7 +245,7 @@ const generateImageStats: ( } ]; }; - +// KEY!!!!!!!!!! export const generateMetrics: ( jointDataset: JointDataset, selectionIndexes: number[][], diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 3ad7c27cac..ddff9b514e 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -1,56 +1,63 @@ // Copyright (c) Microsoft Corporation. // Licensed under the MIT License. -import { IAUCData } from "../Interfaces/IAUCData"; +import { SeriesOptionsType } from "highcharts"; + +import { generateMetricsList } from "../components/OverallMetricChartUtils"; +import { IModelAssessmentContext } from "../Context/ModelAssessmentContext"; +import { ModelTypes } from "../Interfaces/IExplanationContext"; + +import { generateDefaultChartAxes } from "./generateDefaultChartAxes"; +import { ChartTypes } from "./IGenericChartProps"; + +function getStaticROCData(): SeriesOptionsType[] { + return [ + { + data: [ + { x: 0, y: 0 }, + { x: 0, y: 1 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Ideal", + type: "line" + }, + { + data: [ + { x: 0, y: 0 }, + { x: 1, y: 1 } + ], + // TODO: localize + name: "Random", + type: "line" + } + ]; +} export function calculateAUCData( - yTrue: number[], - yPred: number[], - allLabels: string[] -): IAUCData | undefined { - if ( - yTrue.length !== yPred.length || - !yTrue.concat(yPred).every((el) => el < allLabels.length) - ) { - return undefined; - } - // false positive rate is x - // true positive rate is y - // https://github.com/scikit-learn/scikit-learn/blob/2a2772a87b6c772dc3b8292bcffb990ce27515a8/sklearn/metrics/_ranking.py#L50 - - // use ROC to get fpr and tpr - // https://github.com/scikit-learn/scikit-learn/blob/2a2772a87b6c772dc3b8292bcffb990ce27515a8/sklearn/metrics/_ranking.py#L933 - - // const selectedLabelSet = new Set( - // selectedLabels !== undefined ? selectedLabels : allLabels - // ); - - const labelMap = new Map(); - - // Inspired from sklearn - // https://github.com/scikit-learn/scikit-learn/blob/8694eb00f8a3c0dede331fe60c0415bfaafef631/sklearn/metrics/_classification.py#L335 - // let idx = 0; - // allLabels.forEach((element, index) => { - // if (selectedLabelSet.has(element)) { - // labelMap.set(index, idx); - // idx += 1; - // } - // }); - - const data: number[][] = new Array(labelMap.size) - .fill(0) - .map(() => new Array(labelMap.size).fill(0)); - - yTrue.forEach((element, index) => { - const trueIdx = labelMap.get(element); - const predIdx = labelMap.get(yPred[index]); - if (trueIdx !== undefined && predIdx !== undefined) { - data[trueIdx][predIdx] += 1; - } + selectedCohort: number, + context: IModelAssessmentContext +): SeriesOptionsType[] { + const chartProps = generateDefaultChartAxes( + context.jointDataset, + ChartTypes.Scatter + ); + const metricsList = generateMetricsList( + context, + selectedCohort, + ModelTypes.Binary, + chartProps + ); + const data = metricsList.map((metricList) => { + return { x: metricList[5].stat, y: metricList[3].stat }; }); - - return { - AUCData: data, - selectedLabels: [...labelMap.keys()].map((idx) => allLabels[idx]) - }; + const allData = [ + { + data, + name: "AUC", + type: "line" + }, + ...getStaticROCData() + ]; + return allData as SeriesOptionsType[]; } diff --git a/libs/localization/src/lib/en.json b/libs/localization/src/lib/en.json index ae91352527..3b5fd84e19 100644 --- a/libs/localization/src/lib/en.json +++ b/libs/localization/src/lib/en.json @@ -1832,6 +1832,9 @@ "regressionTargetSelectionButton": "Choose target", "selectAllCohortsOption": "Select all", "other": "Other", + "AUCChart": { + "aucCohortSelectionLabel": "Select dataset cohort" + }, "BoxPlot": { "outlierProbability": "probability", "outlierLabel": "Outliers", diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index 0170c07540..c4acfee880 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -1,33 +1,51 @@ // Copyright (c) Microsoft Corporation. // Licensed under the MIT License. -import { getTheme } from "@fluentui/react"; -import { PointOptionsObject, SeriesOptionsType } from "highcharts"; -import React from "react"; - import { + ComboBox, + IComboBox, + IComboBoxOption, + Stack, + StackItem, + getTheme +} from "@fluentui/react"; +import { + BasicHighChart, + ErrorCohort, + FluentUIStyles, + ITelemetryEvent, ModelAssessmentContext, + // calculateAUCData, defaultModelAssessmentContext -} from "../../../../../../core-ui/src/lib/Context/ModelAssessmentContext"; -import { BasicHighChart } from "../../../../../../core-ui/src/lib/Highchart/BasicHighChart"; +} from "@responsible-ai/core-ui"; +import { localization } from "@responsible-ai/localization"; +import React from "react"; + import { getAUCChartOptions } from "./getAUCChartOptions"; -import { ITelemetryEvent } from "../../../../../../core-ui/src/lib/util/ITelemetryEvent"; -// import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; -import { JointDataset, calculateAUCData } from "@responsible-ai/core-ui"; +import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; interface IAUCChartProps { telemetryHook?: (message: ITelemetryEvent) => void; } -export class AUCChart extends React.PureComponent { +export class AUCChart extends React.PureComponent< + IAUCChartProps, + { selectedCohort?: number } +> { public static contextType = ModelAssessmentContext; public context: React.ContextType = defaultModelAssessmentContext; + // public constructor(props: Record = {}) { + // super(props); + + // this.state = { + // selectedCohort: 0 + // }; + // } public render(): React.ReactNode { const theme = getTheme(); - // const classNames = modelOverviewChartStyles(); - const plotData = getAUCChartOptions(this.getStaticROCData(), theme); + const classNames = modelOverviewChartStyles(); if ( this.context.dataset.predicted_y === undefined || @@ -39,55 +57,57 @@ export class AUCChart extends React.PureComponent { if (this.context.dataset.true_y.length !== yLength) { return React.Fragment; } + // const allData = calculateAUCData( + // this.state.selectedCohort ?? 0, + // this.context + // ); + const plotData = getAUCChartOptions([], theme); - // TODO: select cohort from dropdown like confusion matrix - let selectedCohort = this.context.baseErrorCohort; - const AUCData = calculateAUCData( - selectedCohort.cohort.unwrap(JointDataset.TrueYLabel), - selectedCohort.cohort.unwrap(JointDataset.PredictedYLabel), - [] - ); - const AUCPoints: PointOptionsObject[] = []; - const selectedLabels: string[] = []; - AUCData?.AUCData.forEach((row, rowIdx) => - row.forEach((count, colIdx) => { - AUCPoints.push({ - value: count, - x: colIdx, - y: rowIdx - }); - }) - ); - if (AUCData) { - selectedLabels.push(...AUCData.selectedLabels); - } - + // let selectedCohort = this.context.errorCohorts.find( + // (errorCohort) => + // errorCohort.cohort.getCohortID() === this.state.selectedCohort + // ); + // if (selectedCohort === undefined) { + // // if previously selected cohort does not exist use globally selected cohort + // selectedCohort = this.context.errorCohorts[0]; + // } + const aucLocString = localization.ModelAssessment.ModelOverview.AUCChart; + console.log(aucLocString.aucCohortSelectionLabel); return ( - + + + { + return { + key: errorCohort.cohort.getCohortID(), + text: errorCohort.cohort.name + }; + } + )} + onChange={this.onSelectCohort} + styles={FluentUIStyles.limitedSizeMenuDropdown} + /> + + + + + ); } - - private getStaticROCData(): SeriesOptionsType[] { - return [ - { - data: [ - { x: 0, y: 0 }, - { x: 0, y: 1 }, - { x: 1, y: 1 } - ], - // TODO: localize - name: "Ideal", - type: "line" - }, - { - data: [ - { x: 0, y: 0 }, - { x: 1, y: 1 } - ], - // TODO: localize - name: "Random", - type: "line" - } - ]; - } + private onSelectCohort = ( + _: React.FormEvent, + item?: IComboBoxOption + ): void => { + if (item) { + this.setState({ selectedCohort: Number(item.key) }); + } + }; } diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index c258090b7d..ba6f5a1623 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -19,13 +19,13 @@ import { localization } from "@responsible-ai/localization"; import _ from "lodash"; import React from "react"; +import { AUCChart } from "./AUCChart"; import { ConfusionMatrixHeatmap } from "./ConfusionMatrixHeatmap"; import { modelOverviewStyles } from "./ModelOverview.styles"; import { ModelOverviewMetricChart } from "./ModelOverviewMetricChart"; import { ProbabilityDistributionChart } from "./ProbabilityDistributionChart"; import { RegressionDistributionChart } from "./RegressionDistributionChart"; import { getSelectableMetrics } from "./StatsTableUtils"; -import { AUCChart } from "./AUCChart"; interface IModelOverviewChartPivotProps { allCohorts: ErrorCohort[]; @@ -122,7 +122,6 @@ export class ModelOverviewChartPivot extends React.Component< return element.text; }) ); - console.log(this.props.selectedMetrics); return ( Date: Tue, 20 Jun 2023 16:29:16 -0700 Subject: [PATCH 04/13] working --- .../lib/components/OverallMetricChartUtils.ts | 1 + libs/core-ui/src/lib/util/StatisticsUtils.ts | 1 - libs/core-ui/src/lib/util/calculateAUCData.ts | 34 ++++----------- libs/localization/src/lib/en.json | 4 +- .../Controls/ModelOverview/AUCChart.tsx | 43 +++++++++---------- .../ModelOverview/ModelOverviewChartPivot.tsx | 2 +- 6 files changed, 34 insertions(+), 51 deletions(-) diff --git a/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts b/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts index 0903df50b8..c8ed0e6a05 100644 --- a/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts +++ b/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts @@ -220,6 +220,7 @@ export function generateMetricsList( if (!chartProps) { return []; } + console.log(yAxisProperty); if (chartProps.yAxis.property === cohortKey) { const indexes = context.errorCohorts.map((errorCohort) => errorCohort.cohort.unwrap(JointDataset.IndexLabel) diff --git a/libs/core-ui/src/lib/util/StatisticsUtils.ts b/libs/core-ui/src/lib/util/StatisticsUtils.ts index f53f116bfa..cccbc707c8 100644 --- a/libs/core-ui/src/lib/util/StatisticsUtils.ts +++ b/libs/core-ui/src/lib/util/StatisticsUtils.ts @@ -245,7 +245,6 @@ const generateImageStats: ( } ]; }; -// KEY!!!!!!!!!! export const generateMetrics: ( jointDataset: JointDataset, selectionIndexes: number[][], diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index ddff9b514e..fa249d2815 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -1,14 +1,11 @@ // Copyright (c) Microsoft Corporation. // Licensed under the MIT License. +import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; +import { orderBy } from "lodash"; -import { generateMetricsList } from "../components/OverallMetricChartUtils"; -import { IModelAssessmentContext } from "../Context/ModelAssessmentContext"; -import { ModelTypes } from "../Interfaces/IExplanationContext"; - -import { generateDefaultChartAxes } from "./generateDefaultChartAxes"; -import { ChartTypes } from "./IGenericChartProps"; +import { ILabeledStatistic } from "../Interfaces/IStatistic"; function getStaticROCData(): SeriesOptionsType[] { return [ @@ -18,8 +15,7 @@ function getStaticROCData(): SeriesOptionsType[] { { x: 0, y: 1 }, { x: 1, y: 1 } ], - // TODO: localize - name: "Ideal", + name: localization.Interpret.Charts.Ideal, type: "line" }, { @@ -27,33 +23,21 @@ function getStaticROCData(): SeriesOptionsType[] { { x: 0, y: 0 }, { x: 1, y: 1 } ], - // TODO: localize - name: "Random", + name: localization.Interpret.Charts.Random, type: "line" } ]; } export function calculateAUCData( - selectedCohort: number, - context: IModelAssessmentContext + labeledStatistics: ILabeledStatistic[][] ): SeriesOptionsType[] { - const chartProps = generateDefaultChartAxes( - context.jointDataset, - ChartTypes.Scatter - ); - const metricsList = generateMetricsList( - context, - selectedCohort, - ModelTypes.Binary, - chartProps - ); - const data = metricsList.map((metricList) => { - return { x: metricList[5].stat, y: metricList[3].stat }; + const data = labeledStatistics.map((statistic) => { + return { x: statistic[5].stat, y: statistic[3].stat }; }); const allData = [ { - data, + data: orderBy(data, ["x"]), name: "AUC", type: "line" }, diff --git a/libs/localization/src/lib/en.json b/libs/localization/src/lib/en.json index 3b5fd84e19..06c8ce54ab 100644 --- a/libs/localization/src/lib/en.json +++ b/libs/localization/src/lib/en.json @@ -838,7 +838,9 @@ "rowIndex": "Row index", "absoluteIndex": "Absolute index", "xValue": "X-value", - "yValue": "Y-value" + "yValue": "Y-value", + "Ideal": "Ideal", + "Random": "Random" }, "Cohort": { "_cohort.comment": "a subset of the data is called a cohort", diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index c4acfee880..c3eb0921ad 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -13,9 +13,10 @@ import { BasicHighChart, ErrorCohort, FluentUIStyles, + ILabeledStatistic, ITelemetryEvent, ModelAssessmentContext, - // calculateAUCData, + calculateAUCData, defaultModelAssessmentContext } from "@responsible-ai/core-ui"; import { localization } from "@responsible-ai/localization"; @@ -25,6 +26,7 @@ import { getAUCChartOptions } from "./getAUCChartOptions"; import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; interface IAUCChartProps { + cohortStats: ILabeledStatistic[][]; telemetryHook?: (message: ITelemetryEvent) => void; } @@ -36,13 +38,12 @@ export class AUCChart extends React.PureComponent< public context: React.ContextType = defaultModelAssessmentContext; - // public constructor(props: Record = {}) { - // super(props); - - // this.state = { - // selectedCohort: 0 - // }; - // } + public constructor(props: IAUCChartProps) { + super(props); + this.state = { + selectedCohort: 0 + }; + } public render(): React.ReactNode { const theme = getTheme(); const classNames = modelOverviewChartStyles(); @@ -57,29 +58,25 @@ export class AUCChart extends React.PureComponent< if (this.context.dataset.true_y.length !== yLength) { return React.Fragment; } - // const allData = calculateAUCData( - // this.state.selectedCohort ?? 0, - // this.context - // ); - const plotData = getAUCChartOptions([], theme); + const allData = calculateAUCData(this.props.cohortStats); + const plotData = getAUCChartOptions(allData, theme); - // let selectedCohort = this.context.errorCohorts.find( - // (errorCohort) => - // errorCohort.cohort.getCohortID() === this.state.selectedCohort - // ); - // if (selectedCohort === undefined) { - // // if previously selected cohort does not exist use globally selected cohort - // selectedCohort = this.context.errorCohorts[0]; - // } + let selectedCohort = this.context.errorCohorts.find( + (errorCohort) => + errorCohort.cohort.getCohortID() === this.state.selectedCohort + ); + if (selectedCohort === undefined) { + // if previously selected cohort does not exist use globally selected cohort + selectedCohort = this.context.baseErrorCohort; + } const aucLocString = localization.ModelAssessment.ModelOverview.AUCChart; - console.log(aucLocString.aucCohortSelectionLabel); return ( { return { diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index ba6f5a1623..9b25f9bc7e 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -201,7 +201,7 @@ export class ModelOverviewChartPivot extends React.Component< localization.ModelAssessment.ModelOverview.AUCPivotItem } > - + )} From 002fe4d7c7500f3a26309999aedfa123ada56c22 Mon Sep 17 00:00:00 2001 From: hawestra <42190563+hawestra@users.noreply.github.com> Date: Wed, 21 Jun 2023 15:20:32 -0700 Subject: [PATCH 05/13] add some roc calculation --- libs/core-ui/src/lib/util/calculateAUCData.ts | 78 +++++++++++++++++++ .../Controls/ModelOverview/AUCChart.tsx | 23 ++++++ 2 files changed, 101 insertions(+) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index fa249d2815..dcbc27c270 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -45,3 +45,81 @@ export function calculateAUCData( ]; return allData as SeriesOptionsType[]; } + +// export function getROCData(trueLabels: number[], predictedProbabilities: number[]): any[] { +// let truePositive = 0; +// let falsePositive = 0; +// const truePositiveRates = []; +// const falsePositiveRates = []; +// let prevF = Number.NEGATIVE_INFINITY; +// // Based on: Tom Fawcett's "An introduction to ROC analysis.", http://academic.research.microsoft.com/Paper/2173957 +// const sortedIndices = predictedProbabilities.sort().map((_, idx) => idx); + +// for (let elem = 0; elem < predictedProbabilities.length; elem++) { +// const trueLabel = trueLabels[sortedIndices[elem]]; +// const predLabel = predictedProbabilities[sortedIndices[elem]]; +// } + +// } + +export function computeAUC( + trueLabels: number[], + predictedProbabilities: number[] +): number { + // Based on: Tom Fawcett's "An introduction to ROC analysis.", http://academic.research.microsoft.com/Paper/2173957 + const sortedIndices = predictedProbabilities.sort().map((_, idx) => idx); + + let area = 0; + let truePositive = 0; + let falsePositive = 0; + let prevTruePositive = 0; + let prevFalsePositive = 0; + let fPrev = Number.NEGATIVE_INFINITY; + + for (let elem = 0; elem < predictedProbabilities.length; elem++) { + const trueLabel = trueLabels[sortedIndices[elem]]; + const predLabel = predictedProbabilities[sortedIndices[elem]]; + + if (!predLabel || !trueLabel) { + continue; + } + if (Math.abs(predLabel - fPrev) > Number.EPSILON) { + area += trapz( + falsePositive, + prevFalsePositive, + truePositive, + prevTruePositive + ); + fPrev = predLabel; + prevFalsePositive = falsePositive; + prevTruePositive = truePositive; + } + + if (trueLabel > 0) { + truePositive += 1; + } + + if (trueLabel <= 0) { + falsePositive += 1; + } + } + + area += trapz( + falsePositive, + prevFalsePositive, + truePositive, + prevTruePositive + ); + + // RS: Account for numerical inaccuracies in integration that might cause AUC to be > 1 + return Math.min( + 1, + truePositive * falsePositive !== 0 + ? area / (truePositive * falsePositive) + : 0 + ); +} + +function trapz(x1: number, x2: number, y1: number, y2: number): number { + return 0.5 * Math.abs(x1 - x2) * (y1 + y2); +} diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index c3eb0921ad..fe33d6a954 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -15,11 +15,14 @@ import { FluentUIStyles, ILabeledStatistic, ITelemetryEvent, + JointDataset, ModelAssessmentContext, calculateAUCData, + computeAUC, defaultModelAssessmentContext } from "@responsible-ai/core-ui"; import { localization } from "@responsible-ai/localization"; +import { getFetchPredictionPromise } from "libs/counterfactuals/src/util/getFetchPredictionPromise"; import React from "react"; import { getAUCChartOptions } from "./getAUCChartOptions"; @@ -69,6 +72,7 @@ export class AUCChart extends React.PureComponent< // if previously selected cohort does not exist use globally selected cohort selectedCohort = this.context.baseErrorCohort; } + this.getData(); const aucLocString = localization.ModelAssessment.ModelOverview.AUCChart; return ( @@ -107,4 +111,23 @@ export class AUCChart extends React.PureComponent< this.setState({ selectedCohort: Number(item.key) }); } }; + private getData = (): void => { + if ( + this.context.jointDataset.hasPredictedProbabilities && + this.context.jointDataset.hasTrueY + ) { + console.log(this.context.jointDataset); + const trueYLabels = this.context.jointDataset.unwrap( + JointDataset.TrueYLabel + ); + // TODO: how to get predicted probabilities ? + + const predictedProbabilities = this.context.jointDataset.unwrap( + JointDataset.PredictedYLabel + ); + console.log(predictedProbabilities); + const result = computeAUC(trueYLabels, predictedProbabilities); + console.log(result); + } + }; } From 925d5325cebad99f504f77b7283e85962261d586 Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Tue, 27 Jun 2023 18:15:33 -0700 Subject: [PATCH 06/13] write ROC function --- libs/core-ui/src/lib/util/calculateAUCData.ts | 81 +++++++++++++++++-- .../Controls/ModelOverview/AUCChart.tsx | 4 +- .../ModelOverview/ModelOverviewChartPivot.tsx | 5 +- 3 files changed, 80 insertions(+), 10 deletions(-) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index fa249d2815..a3fdc65bdb 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,9 +3,14 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { orderBy } from "lodash"; +import { orderBy, sortBy, sum, zipWith } from "lodash"; -import { ILabeledStatistic } from "../Interfaces/IStatistic"; +import { IDataset } from "../Interfaces/IDataset"; + +export interface IROCData { + falsePositiveRates: number[]; + truePositiveRates: number[]; +} function getStaticROCData(): SeriesOptionsType[] { return [ @@ -29,12 +34,72 @@ function getStaticROCData(): SeriesOptionsType[] { ]; } -export function calculateAUCData( - labeledStatistics: ILabeledStatistic[][] -): SeriesOptionsType[] { - const data = labeledStatistics.map((statistic) => { - return { x: statistic[5].stat, y: statistic[3].stat }; - }); +export function calculateROCData( + probabilityY: number[], + trueY: number[] +): IROCData { + const rocData: IROCData = { + falsePositiveRates: [], + truePositiveRates: [] + }; + + const yData = zipWith( + probabilityY as number[], + trueY as number[], + (probY, trueY) => { + return { + // TODO: confirm that it's probability that y == 1 + probabilityY: probY[1], + trueY + }; + } + ); + const totalPositives = sum(trueY); + const totalNegatives = trueY.length - totalPositives; + const sortedY = sortBy(yData, ["probabilityY"]); + // TODO: remove duplicates of values + let i = 0; + while (i < sortedY.length) { + let truePositives = 0; + let falsePositives = 0; + for (const y of sortedY) { + if (y.trueY) { + // need some check for predicted ??? + if (y.probabilityY >= sortedY[i].probabilityY) { + truePositives++; + } else { + falsePositives++; + } + } + } + const tpr = truePositives / totalPositives; + const fpr = falsePositives / totalNegatives; + rocData.truePositiveRates.push(tpr); + rocData.falsePositiveRates.push(fpr); + i++; + } + console.log(rocData); + return rocData; +} + +export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { + if (!dataset.probability_y) { + // TODO: show warning message + return [...getStaticROCData()]; + } + console.log(dataset.true_y); + const rocData = calculateROCData( + // TODO: remove cast + dataset.probability_y as unknown as number[], + dataset.true_y as number[] + ); + const data = zipWith( + rocData.falsePositiveRates, + rocData.truePositiveRates, + (fpr, tpr) => { + return { x: fpr, y: tpr }; + } + ); const allData = [ { data: orderBy(data, ["x"]), diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index c3eb0921ad..755975feaf 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -13,6 +13,7 @@ import { BasicHighChart, ErrorCohort, FluentUIStyles, + IDataset, ILabeledStatistic, ITelemetryEvent, ModelAssessmentContext, @@ -26,6 +27,7 @@ import { getAUCChartOptions } from "./getAUCChartOptions"; import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; interface IAUCChartProps { + dataset: IDataset; cohortStats: ILabeledStatistic[][]; telemetryHook?: (message: ITelemetryEvent) => void; } @@ -58,7 +60,7 @@ export class AUCChart extends React.PureComponent< if (this.context.dataset.true_y.length !== yLength) { return React.Fragment; } - const allData = calculateAUCData(this.props.cohortStats); + const allData = calculateAUCData(this.props.dataset); const plotData = getAUCChartOptions(allData, theme); let selectedCohort = this.context.errorCohorts.find( diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index 9b25f9bc7e..2c6405f6ac 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -201,7 +201,10 @@ export class ModelOverviewChartPivot extends React.Component< localization.ModelAssessment.ModelOverview.AUCPivotItem } > - + )} From 6b4fc7d56bf5359e6bcdbeef67a6b154311ed938 Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Wed, 28 Jun 2023 19:33:53 -0700 Subject: [PATCH 07/13] pipe ROC data --- libs/core-ui/src/lib/util/calculateAUCData.ts | 113 ++++-------------- .../Controls/ModelOverview/AUCChart.tsx | 40 +++---- 2 files changed, 39 insertions(+), 114 deletions(-) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 23971ede03..674622b07c 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,7 +3,7 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { orderBy, sortBy, sum, zipWith } from "lodash"; +import { orderBy, sortBy, zipWith } from "lodash"; import { IDataset } from "../Interfaces/IDataset"; @@ -39,8 +39,8 @@ export function calculateROCData( trueY: number[] ): IROCData { const rocData: IROCData = { - falsePositiveRates: [], - truePositiveRates: [] + falsePositiveRates: [0], + truePositiveRates: [0] }; const yData = zipWith( @@ -49,36 +49,44 @@ export function calculateROCData( (probY, trueY) => { return { // TODO: confirm that it's probability that y == 1 - probabilityY: probY[1], + probabilityY: probY[0], trueY }; } ); - const totalPositives = sum(trueY); - const totalNegatives = trueY.length - totalPositives; const sortedY = sortBy(yData, ["probabilityY"]); // TODO: remove duplicates of values - let i = 0; - while (i < sortedY.length) { + let i = sortedY.length - 1; + while (i >= 0) { let truePositives = 0; + let trueNegatives = 0; let falsePositives = 0; + let falseNegatives = 0; + const threshold = sortedY[i].probabilityY; for (const y of sortedY) { - if (y.trueY) { - // need some check for predicted ??? - if (y.probabilityY >= sortedY[i].probabilityY) { + // if the probability of predicting the positive label is greater than the + // threshold and the positive label was predicted than it's a true positive. + // otherwise, it's a false positive + if (y.probabilityY >= threshold) { + if (y.trueY) { truePositives++; } else { falsePositives++; } + } else if (y.trueY) { + falseNegatives++; + } else { + trueNegatives++; } } + const totalPositives = truePositives + falseNegatives || 1; + const totalNegatives = falsePositives + trueNegatives || 1; const tpr = truePositives / totalPositives; const fpr = falsePositives / totalNegatives; rocData.truePositiveRates.push(tpr); rocData.falsePositiveRates.push(fpr); - i++; + i--; } - console.log(rocData); return rocData; } @@ -87,7 +95,6 @@ export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { // TODO: show warning message return [...getStaticROCData()]; } - console.log(dataset.true_y); const rocData = calculateROCData( // TODO: remove cast dataset.probability_y as unknown as number[], @@ -110,81 +117,3 @@ export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { ]; return allData as SeriesOptionsType[]; } - -// export function getROCData(trueLabels: number[], predictedProbabilities: number[]): any[] { -// let truePositive = 0; -// let falsePositive = 0; -// const truePositiveRates = []; -// const falsePositiveRates = []; -// let prevF = Number.NEGATIVE_INFINITY; -// // Based on: Tom Fawcett's "An introduction to ROC analysis.", http://academic.research.microsoft.com/Paper/2173957 -// const sortedIndices = predictedProbabilities.sort().map((_, idx) => idx); - -// for (let elem = 0; elem < predictedProbabilities.length; elem++) { -// const trueLabel = trueLabels[sortedIndices[elem]]; -// const predLabel = predictedProbabilities[sortedIndices[elem]]; -// } - -// } - -export function computeAUC( - trueLabels: number[], - predictedProbabilities: number[] -): number { - // Based on: Tom Fawcett's "An introduction to ROC analysis.", http://academic.research.microsoft.com/Paper/2173957 - const sortedIndices = predictedProbabilities.sort().map((_, idx) => idx); - - let area = 0; - let truePositive = 0; - let falsePositive = 0; - let prevTruePositive = 0; - let prevFalsePositive = 0; - let fPrev = Number.NEGATIVE_INFINITY; - - for (let elem = 0; elem < predictedProbabilities.length; elem++) { - const trueLabel = trueLabels[sortedIndices[elem]]; - const predLabel = predictedProbabilities[sortedIndices[elem]]; - - if (!predLabel || !trueLabel) { - continue; - } - if (Math.abs(predLabel - fPrev) > Number.EPSILON) { - area += trapz( - falsePositive, - prevFalsePositive, - truePositive, - prevTruePositive - ); - fPrev = predLabel; - prevFalsePositive = falsePositive; - prevTruePositive = truePositive; - } - - if (trueLabel > 0) { - truePositive += 1; - } - - if (trueLabel <= 0) { - falsePositive += 1; - } - } - - area += trapz( - falsePositive, - prevFalsePositive, - truePositive, - prevTruePositive - ); - - // RS: Account for numerical inaccuracies in integration that might cause AUC to be > 1 - return Math.min( - 1, - truePositive * falsePositive !== 0 - ? area / (truePositive * falsePositive) - : 0 - ); -} - -function trapz(x1: number, x2: number, y1: number, y2: number): number { - return 0.5 * Math.abs(x1 - x2) * (y1 + y2); -} diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index 8c3803ef84..512677dbe8 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -16,14 +16,11 @@ import { IDataset, ILabeledStatistic, ITelemetryEvent, - JointDataset, ModelAssessmentContext, calculateAUCData, - computeAUC, defaultModelAssessmentContext } from "@responsible-ai/core-ui"; import { localization } from "@responsible-ai/localization"; -import { getFetchPredictionPromise } from "libs/counterfactuals/src/util/getFetchPredictionPromise"; import React from "react"; import { getAUCChartOptions } from "./getAUCChartOptions"; @@ -74,7 +71,6 @@ export class AUCChart extends React.PureComponent< // if previously selected cohort does not exist use globally selected cohort selectedCohort = this.context.baseErrorCohort; } - this.getData(); const aucLocString = localization.ModelAssessment.ModelOverview.AUCChart; return ( @@ -113,23 +109,23 @@ export class AUCChart extends React.PureComponent< this.setState({ selectedCohort: Number(item.key) }); } }; - private getData = (): void => { - if ( - this.context.jointDataset.hasPredictedProbabilities && - this.context.jointDataset.hasTrueY - ) { - console.log(this.context.jointDataset); - const trueYLabels = this.context.jointDataset.unwrap( - JointDataset.TrueYLabel - ); - // TODO: how to get predicted probabilities ? + // private getData = (): void => { + // if ( + // this.context.jointDataset.hasPredictedProbabilities && + // this.context.jointDataset.hasTrueY + // ) { + // console.log(this.context.jointDataset); + // const trueYLabels = this.context.jointDataset.unwrap( + // JointDataset.TrueYLabel + // ); + // // TODO: how to get predicted probabilities ? - const predictedProbabilities = this.context.jointDataset.unwrap( - JointDataset.PredictedYLabel - ); - console.log(predictedProbabilities); - const result = computeAUC(trueYLabels, predictedProbabilities); - console.log(result); - } - }; + // const predictedProbabilities = this.context.jointDataset.unwrap( + // JointDataset.PredictedYLabel + // ); + // console.log(predictedProbabilities); + // const result = computeAUC(trueYLabels, predictedProbabilities); + // console.log(result); + // } + // }; } From 03e15b45da3546cf3c500e438c292c718c111f07 Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Thu, 6 Jul 2023 11:46:58 -0700 Subject: [PATCH 08/13] add test and multiclass" --- libs/core-ui/src/lib/FeatureFlights.ts | 6 +- .../src/lib/util/calculateAUCData.test.ts | 22 +++ libs/core-ui/src/lib/util/calculateAUCData.ts | 138 ++++++++++++------ libs/core-ui/tsconfig.lib.json | 2 +- libs/localization/src/lib/en.json | 3 - .../Controls/ModelOverview/AUCChart.tsx | 77 +--------- .../ModelOverview/ModelOverviewChartPivot.tsx | 9 +- 7 files changed, 132 insertions(+), 125 deletions(-) create mode 100644 libs/core-ui/src/lib/util/calculateAUCData.test.ts diff --git a/libs/core-ui/src/lib/FeatureFlights.ts b/libs/core-ui/src/lib/FeatureFlights.ts index 0d8a78c092..205046483e 100644 --- a/libs/core-ui/src/lib/FeatureFlights.ts +++ b/libs/core-ui/src/lib/FeatureFlights.ts @@ -2,10 +2,14 @@ // Licensed under the MIT License. export const dataBalanceExperienceFlight = "dataBalanceExperience"; +export const aucChartExperienceFlight = "aucChartExperience"; export const featureFlightSeparator = "&"; // add more entries for new feature flights -export const featureFlights = [dataBalanceExperienceFlight]; +export const featureFlights = [ + dataBalanceExperienceFlight, + aucChartExperienceFlight +]; export function parseFeatureFlights(featureFlights?: string): string[] { if (featureFlights) { diff --git a/libs/core-ui/src/lib/util/calculateAUCData.test.ts b/libs/core-ui/src/lib/util/calculateAUCData.test.ts new file mode 100644 index 0000000000..a11776d9ab --- /dev/null +++ b/libs/core-ui/src/lib/util/calculateAUCData.test.ts @@ -0,0 +1,22 @@ +// Copyright (c) Microsoft Corporation. +// Licensed under the MIT License. + +import { binarizeData } from "./calculateAUCData"; + +describe("Test binarizeData", () => { + it("should binarize numbers", () => { + const result = binarizeData([1, 3, 4, 0], [0, 1, 2, 3, 4]); + expect(result).toEqual([[]]); + }); + it("should binarize strings", () => { + const result = binarizeData( + ["one", "two", "three"], + ["three", "one", "two"] + ); + expect(result).toEqual([[]]); + }); + it("should binarize binary data", () => { + const result = binarizeData([1, 0, 1, 0], [0, 1]); + expect(result).toEqual([[]]); + }); +}); diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 674622b07c..7c5004a937 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,7 +3,7 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { orderBy, sortBy, zipWith } from "lodash"; +import { orderBy, sortBy, sum, unzip, zipWith } from "lodash"; import { IDataset } from "../Interfaces/IDataset"; @@ -34,35 +34,43 @@ function getStaticROCData(): SeriesOptionsType[] { ]; } -export function calculateROCData( +function calculatePerClassROCData( probabilityY: number[], - trueY: number[] + binTrueY: boolean[] ): IROCData { const rocData: IROCData = { - falsePositiveRates: [0], - truePositiveRates: [0] + falsePositiveRates: [], + truePositiveRates: [] }; - const yData = zipWith( - probabilityY as number[], - trueY as number[], - (probY, trueY) => { - return { - // TODO: confirm that it's probability that y == 1 - probabilityY: probY[0], - trueY - }; - } - ); + const yData = zipWith(probabilityY, binTrueY, (probY, trueY) => { + return { + probabilityY: probY, + trueY + }; + }); const sortedY = sortBy(yData, ["probabilityY"]); - // TODO: remove duplicates of values + let prevProba = -Infinity; + let truePositives = 0; + let falsePositives = 0; + const totalPositives = sum(binTrueY); + const totalNegatives = binTrueY.length - totalPositives; let i = sortedY.length - 1; while (i >= 0) { - let truePositives = 0; - let trueNegatives = 0; - let falsePositives = 0; - let falseNegatives = 0; + // only add the point, if the probability has changed + if (sortedY[i].probabilityY !== prevProba) { + addROCPoint( + truePositives, + falsePositives, + totalPositives, + totalNegatives, + rocData + ); + prevProba = sortedY[i].probabilityY; + } const threshold = sortedY[i].probabilityY; + truePositives = 0; + falsePositives = 0; for (const y of sortedY) { // if the probability of predicting the positive label is greater than the // threshold and the positive label was predicted than it's a true positive. @@ -73,40 +81,82 @@ export function calculateROCData( } else { falsePositives++; } - } else if (y.trueY) { - falseNegatives++; - } else { - trueNegatives++; } } - const totalPositives = truePositives + falseNegatives || 1; - const totalNegatives = falsePositives + trueNegatives || 1; - const tpr = truePositives / totalPositives; - const fpr = falsePositives / totalNegatives; - rocData.truePositiveRates.push(tpr); - rocData.falsePositiveRates.push(fpr); i--; } + addROCPoint( + truePositives, + falsePositives, + totalPositives, + totalNegatives, + rocData + ); + return rocData; } +function addROCPoint( + truePositives: number, + falsePositives: number, + totalPositives: number, + totalNegatives: number, + rocData: IROCData +): void { + // prevent division by 0 + const tpr = totalPositives === 0 ? 1 : truePositives / totalPositives; + const fpr = totalNegatives === 0 ? 1 : falsePositives / totalNegatives; + rocData.truePositiveRates.push(tpr); + rocData.falsePositiveRates.push(fpr); +} + +export function binarizeData( + yData: string[] | number[] | number[][], + classes: string[] | number[] +): boolean[][] { + // binarize labels in a one-vs-all fashion according to + const yBinData: boolean[][] = []; + + for (const yDatum of yData) { + const binaryData = classes.map((c) => { + return c === yDatum; + }); + yBinData.push(binaryData); + } + // transpose + return unzip(yBinData); +} + +// based on https://msdata.visualstudio.com/Vienna/_git/AzureMlCli?path=/src/azureml-metrics/azureml/metrics/_classification.py&version=GBmaster export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { - if (!dataset.probability_y) { + if (!dataset.probability_y || !dataset.class_names) { // TODO: show warning message return [...getStaticROCData()]; } - const rocData = calculateROCData( - // TODO: remove cast - dataset.probability_y as unknown as number[], - dataset.true_y as number[] - ); - const data = zipWith( - rocData.falsePositiveRates, - rocData.truePositiveRates, - (fpr, tpr) => { - return { x: fpr, y: tpr }; - } - ); + + const binTrueY = binarizeData(dataset.true_y, dataset.class_names); + const data = []; + // TODO: class_names.length might not work .... + for (let i = 0; i < dataset.class_names.length; i++) { + const classROCData = calculatePerClassROCData( + dataset.probability_y[i], + binTrueY[i] + ); + const classData = zipWith( + classROCData.falsePositiveRates, + classROCData.truePositiveRates, + (fpr, tpr) => { + return { + // TODO: check class_names length earlier ? + name: dataset.class_names ? dataset.class_names[i] : "", + x: fpr, + y: tpr + }; + } + ); + data.push(classData); + } + const allData = [ { data: orderBy(data, ["x"]), diff --git a/libs/core-ui/tsconfig.lib.json b/libs/core-ui/tsconfig.lib.json index cad4e5e98f..50e3b3a526 100644 --- a/libs/core-ui/tsconfig.lib.json +++ b/libs/core-ui/tsconfig.lib.json @@ -9,5 +9,5 @@ "../../node_modules/@nrwl/react/typings/image.d.ts" ], "exclude": ["**/*.spec.ts", "**/*.spec.tsx", "**/*.test.ts", "**/*.test.tsx"], - "include": ["**/*.js", "**/*.jsx", "**/*.ts", "**/*.tsx", "../model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx", "../model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/getAUCChartOptions.ts"] + "include": ["**/*.js", "**/*.jsx", "**/*.ts", "**/*.tsx"] } diff --git a/libs/localization/src/lib/en.json b/libs/localization/src/lib/en.json index 06c8ce54ab..58799a9c8b 100644 --- a/libs/localization/src/lib/en.json +++ b/libs/localization/src/lib/en.json @@ -1834,9 +1834,6 @@ "regressionTargetSelectionButton": "Choose target", "selectAllCohortsOption": "Select all", "other": "Other", - "AUCChart": { - "aucCohortSelectionLabel": "Select dataset cohort" - }, "BoxPlot": { "outlierProbability": "probability", "outlierLabel": "Outliers", diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx index 512677dbe8..cb17b49693 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/AUCChart.tsx @@ -1,18 +1,9 @@ // Copyright (c) Microsoft Corporation. // Licensed under the MIT License. -import { - ComboBox, - IComboBox, - IComboBoxOption, - Stack, - StackItem, - getTheme -} from "@fluentui/react"; +import { Stack, StackItem, getTheme } from "@fluentui/react"; import { BasicHighChart, - ErrorCohort, - FluentUIStyles, IDataset, ILabeledStatistic, ITelemetryEvent, @@ -20,7 +11,6 @@ import { calculateAUCData, defaultModelAssessmentContext } from "@responsible-ai/core-ui"; -import { localization } from "@responsible-ai/localization"; import React from "react"; import { getAUCChartOptions } from "./getAUCChartOptions"; @@ -32,20 +22,11 @@ interface IAUCChartProps { telemetryHook?: (message: ITelemetryEvent) => void; } -export class AUCChart extends React.PureComponent< - IAUCChartProps, - { selectedCohort?: number } -> { +export class AUCChart extends React.PureComponent { public static contextType = ModelAssessmentContext; public context: React.ContextType = defaultModelAssessmentContext; - public constructor(props: IAUCChartProps) { - super(props); - this.state = { - selectedCohort: 0 - }; - } public render(): React.ReactNode { const theme = getTheme(); const classNames = modelOverviewChartStyles(); @@ -62,35 +43,8 @@ export class AUCChart extends React.PureComponent< } const allData = calculateAUCData(this.props.dataset); const plotData = getAUCChartOptions(allData, theme); - - let selectedCohort = this.context.errorCohorts.find( - (errorCohort) => - errorCohort.cohort.getCohortID() === this.state.selectedCohort - ); - if (selectedCohort === undefined) { - // if previously selected cohort does not exist use globally selected cohort - selectedCohort = this.context.baseErrorCohort; - } - const aucLocString = localization.ModelAssessment.ModelOverview.AUCChart; return ( - - { - return { - key: errorCohort.cohort.getCohortID(), - text: errorCohort.cohort.name - }; - } - )} - onChange={this.onSelectCohort} - styles={FluentUIStyles.limitedSizeMenuDropdown} - /> - ); } - private onSelectCohort = ( - _: React.FormEvent, - item?: IComboBoxOption - ): void => { - if (item) { - this.setState({ selectedCohort: Number(item.key) }); - } - }; - // private getData = (): void => { - // if ( - // this.context.jointDataset.hasPredictedProbabilities && - // this.context.jointDataset.hasTrueY - // ) { - // console.log(this.context.jointDataset); - // const trueYLabels = this.context.jointDataset.unwrap( - // JointDataset.TrueYLabel - // ); - // // TODO: how to get predicted probabilities ? - - // const predictedProbabilities = this.context.jointDataset.unwrap( - // JointDataset.PredictedYLabel - // ); - // console.log(predictedProbabilities); - // const result = computeAUC(trueYLabels, predictedProbabilities); - // console.log(result); - // } - // }; } diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index 2c6405f6ac..f1c4c29ee8 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -14,6 +14,8 @@ import { MissingParametersPlaceholder, IsMulticlass, ifEnableLargeData + // isFlightActive, + // aucChartExperienceFlight } from "@responsible-ai/core-ui"; import { localization } from "@responsible-ai/localization"; import _ from "lodash"; @@ -122,7 +124,7 @@ export class ModelOverviewChartPivot extends React.Component< return element.text; }) ); - + console.log(this.context.dataset); return ( Date: Fri, 7 Jul 2023 13:03:14 -0700 Subject: [PATCH 09/13] working version plus tests --- .../src/lib/util/calculateAUCData.test.ts | 134 +++++++++++++++- libs/core-ui/src/lib/util/calculateAUCData.ts | 143 +++++++----------- 2 files changed, 188 insertions(+), 89 deletions(-) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.test.ts b/libs/core-ui/src/lib/util/calculateAUCData.test.ts index a11776d9ab..573c7d3fa4 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.test.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.test.ts @@ -1,22 +1,148 @@ // Copyright (c) Microsoft Corporation. // Licensed under the MIT License. -import { binarizeData } from "./calculateAUCData"; +import { binarizeData, calculatePerClassROCData } from "./calculateAUCData"; describe("Test binarizeData", () => { it("should binarize numbers", () => { const result = binarizeData([1, 3, 4, 0], [0, 1, 2, 3, 4]); - expect(result).toEqual([[]]); + expect(result).toEqual([ + [0, 1, 0, 0, 0], + [0, 0, 0, 1, 0], + [0, 0, 0, 0, 1], + [1, 0, 0, 0, 0] + ]); }); it("should binarize strings", () => { const result = binarizeData( ["one", "two", "three"], ["three", "one", "two"] ); - expect(result).toEqual([[]]); + expect(result).toEqual([ + [0, 1, 0], + [0, 0, 1], + [1, 0, 0] + ]); }); it("should binarize binary data", () => { const result = binarizeData([1, 0, 1, 0], [0, 1]); - expect(result).toEqual([[]]); + expect(result).toEqual([ + [0, 1], + [1, 0], + [0, 1], + [1, 0] + ]); + }); +}); +describe("Test calculatePerClassROCData", () => { + it("generate x,y data corresponding to fpr and tpr respectively", () => { + const result = calculatePerClassROCData( + [0.33, 0.32, 0.34, 0.29, 0.12, 0.41, 0.4, 0.39], + [0, 1, 1, 0, 1, 0, 0, 0] + ); + expect(result).toEqual({ + points: [ + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 1 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 1, y: 0.6666666666666666 }, + { x: 0.8, y: 0.6666666666666666 }, + { x: 0.8, y: 0.6666666666666666 }, + { x: 0.8, y: 0.6666666666666666 }, + { x: 0.8, y: 0.3333333333333333 }, + { x: 0.6, y: 0.3333333333333333 }, + { x: 0.6, y: 0 }, + { x: 0.6, y: 0 }, + { x: 0.6, y: 0 }, + { x: 0.6, y: 0 }, + { x: 0.6, y: 0 }, + { x: 0.4, y: 0 }, + { x: 0.2, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 }, + { x: 0, y: 0 } + ] + }); }); }); diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 7c5004a937..d7b39b28c7 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,13 +3,16 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { orderBy, sortBy, sum, unzip, zipWith } from "lodash"; +import { range, unzip } from "lodash"; import { IDataset } from "../Interfaces/IDataset"; +interface IPoint { + x: number; + y: number; +} export interface IROCData { - falsePositiveRates: number[]; - truePositiveRates: number[]; + points: IPoint[]; } function getStaticROCData(): SeriesOptionsType[] { @@ -34,64 +37,45 @@ function getStaticROCData(): SeriesOptionsType[] { ]; } -function calculatePerClassROCData( +export function calculatePerClassROCData( probabilityY: number[], - binTrueY: boolean[] + binY: number[] ): IROCData { const rocData: IROCData = { - falsePositiveRates: [], - truePositiveRates: [] + points: [] }; - - const yData = zipWith(probabilityY, binTrueY, (probY, trueY) => { - return { - probabilityY: probY, - trueY - }; - }); - const sortedY = sortBy(yData, ["probabilityY"]); - let prevProba = -Infinity; + const thresholds = range(0, 1, 0.01); let truePositives = 0; let falsePositives = 0; - const totalPositives = sum(binTrueY); - const totalNegatives = binTrueY.length - totalPositives; - let i = sortedY.length - 1; - while (i >= 0) { - // only add the point, if the probability has changed - if (sortedY[i].probabilityY !== prevProba) { - addROCPoint( - truePositives, - falsePositives, - totalPositives, - totalNegatives, - rocData - ); - prevProba = sortedY[i].probabilityY; - } - const threshold = sortedY[i].probabilityY; - truePositives = 0; - falsePositives = 0; - for (const y of sortedY) { + let trueNegatives = 0; + let falseNegatives = 0; + + for (const threshold of thresholds) { + for (const [index, yProba] of probabilityY.entries()) { // if the probability of predicting the positive label is greater than the - // threshold and the positive label was predicted than it's a true positive. + // threshold then it's a true positive. // otherwise, it's a false positive - if (y.probabilityY >= threshold) { - if (y.trueY) { - truePositives++; + if (yProba < threshold) { + if (binY[index]) { + falseNegatives++; } else { - falsePositives++; + trueNegatives++; } + } else if (binY[index]) { + truePositives++; + } else { + falsePositives++; } } - i--; + addROCPoint( + truePositives, + falsePositives, + trueNegatives, + falseNegatives, + rocData + ); + truePositives = falsePositives = trueNegatives = falseNegatives = 0; } - addROCPoint( - truePositives, - falsePositives, - totalPositives, - totalNegatives, - rocData - ); return rocData; } @@ -99,32 +83,31 @@ function calculatePerClassROCData( function addROCPoint( truePositives: number, falsePositives: number, - totalPositives: number, - totalNegatives: number, + trueNegatives: number, + falseNegatives: number, rocData: IROCData ): void { // prevent division by 0 + const totalNegatives = trueNegatives + falsePositives; + const totalPositives = truePositives + falseNegatives; const tpr = totalPositives === 0 ? 1 : truePositives / totalPositives; const fpr = totalNegatives === 0 ? 1 : falsePositives / totalNegatives; - rocData.truePositiveRates.push(tpr); - rocData.falsePositiveRates.push(fpr); + rocData.points.push({ x: fpr, y: tpr }); } export function binarizeData( yData: string[] | number[] | number[][], classes: string[] | number[] -): boolean[][] { +): number[][] { // binarize labels in a one-vs-all fashion according to - const yBinData: boolean[][] = []; - + const yBinData: number[][] = []; for (const yDatum of yData) { const binaryData = classes.map((c) => { - return c === yDatum; + return c === yDatum ? 1 : 0; }); yBinData.push(binaryData); } - // transpose - return unzip(yBinData); + return yBinData; } // based on https://msdata.visualstudio.com/Vienna/_git/AzureMlCli?path=/src/azureml-metrics/azureml/metrics/_classification.py&version=GBmaster @@ -134,36 +117,26 @@ export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { return [...getStaticROCData()]; } - const binTrueY = binarizeData(dataset.true_y, dataset.class_names); + // temporary, replace with dataset.classnames + const cNames = [0, 1]; + const binTrueY = binarizeData(dataset.true_y, cNames); + console.log(binTrueY); + // transpose in order to group class data together + const perClassBinY = unzip(binTrueY); + const perClassProba = unzip(dataset.probability_y); const data = []; - // TODO: class_names.length might not work .... - for (let i = 0; i < dataset.class_names.length; i++) { - const classROCData = calculatePerClassROCData( - dataset.probability_y[i], - binTrueY[i] - ); - const classData = zipWith( - classROCData.falsePositiveRates, - classROCData.truePositiveRates, - (fpr, tpr) => { - return { - // TODO: check class_names length earlier ? - name: dataset.class_names ? dataset.class_names[i] : "", - x: fpr, - y: tpr - }; - } - ); + // loop through each class to calculate roc data per class + for (const [i, element] of perClassBinY.entries()) { + const classROCData = calculatePerClassROCData(perClassProba[i], element); + const classData = { + data: classROCData.points, + // TODO: check class_names length earlier ? + name: cNames ? cNames[i] : "", + type: "line" + }; data.push(classData); } - const allData = [ - { - data: orderBy(data, ["x"]), - name: "AUC", - type: "line" - }, - ...getStaticROCData() - ]; + const allData = [...data, ...getStaticROCData()]; return allData as SeriesOptionsType[]; } From 41e42cd2cdd2d20028b90db3fc7917c262e9b29b Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Tue, 1 Aug 2023 17:24:26 -0700 Subject: [PATCH 10/13] address comments --- libs/core-ui/src/lib/util/calculateAUCData.ts | 46 +++++++++++++------ 1 file changed, 32 insertions(+), 14 deletions(-) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 8c6b7e2130..18d7cacdae 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,7 +3,7 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { unzip } from "lodash"; +import { orderBy, unzip } from "lodash"; import { IDataset } from "../Interfaces/IDataset"; @@ -41,16 +41,13 @@ export function calculatePerClassROCData( probabilityY: number[], binY: number[] ): IROCData { - const rocData: IROCData = { - points: [] - }; const thresholds = probabilityY.sort(); - let truePositives = 0; - let falsePositives = 0; - let trueNegatives = 0; - let falseNegatives = 0; - + const points: IPoint[] = []; for (const threshold of thresholds) { + let truePositives = 0; + let falsePositives = 0; + let trueNegatives = 0; + let falseNegatives = 0; for (const [index, yProba] of probabilityY.entries()) { // if the probability of predicting the positive label is greater than the // threshold then it's a true positive. @@ -72,12 +69,33 @@ export function calculatePerClassROCData( falsePositives, trueNegatives, falseNegatives, - rocData + points ); - truePositives = falsePositives = trueNegatives = falseNegatives = 0; } - rocData.points.push({ x: 0, y: 0 }); + points.push({ x: 0, y: 0 }); + // construct the convex hull of the ROC points + const sortedPoints = orderBy(points, ["x", "y"], ["asc", "desc"]); + const convexHullPoints = []; + let highestY = -Infinity; + for (let i = 0; i < sortedPoints.length; i++) { + // only add points which have a greater y value than the last seen y + if (sortedPoints[i].y >= highestY) { + convexHullPoints.push(sortedPoints[i]); + highestY = sortedPoints[i].y; + } + let frontIterator = i + 1; + while ( + frontIterator < sortedPoints.length && + sortedPoints[i].x === sortedPoints[frontIterator].x + ) { + frontIterator++; + } + i = frontIterator; + } + const rocData: IROCData = { + points: convexHullPoints + }; return rocData; } @@ -86,14 +104,14 @@ function addROCPoint( falsePositives: number, trueNegatives: number, falseNegatives: number, - rocData: IROCData + points: IPoint[] ): void { // prevent division by 0 const totalNegatives = trueNegatives + falsePositives; const totalPositives = truePositives + falseNegatives; const tpr = totalPositives === 0 ? 1 : truePositives / totalPositives; const fpr = totalNegatives === 0 ? 1 : falsePositives / totalNegatives; - rocData.points.push({ x: fpr, y: tpr }); + points.push({ x: fpr, y: tpr }); } export function binarizeData( From 17f368285eada703ba86b779e5e26c35e12f433c Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Wed, 2 Aug 2023 17:20:31 -0700 Subject: [PATCH 11/13] reduce complexity and address comments --- .../lib/components/OverallMetricChartUtils.ts | 1 - .../src/lib/util/calculateAUCData.test.ts | 140 +++++------------- libs/core-ui/src/lib/util/calculateAUCData.ts | 87 ++++++----- libs/localization/src/lib/en.json | 5 + .../ModelOverview/ModelOverviewChartPivot.tsx | 1 - .../ModelOverview/getAUCChartOptions.ts | 18 ++- 6 files changed, 103 insertions(+), 149 deletions(-) diff --git a/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts b/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts index c8ed0e6a05..0903df50b8 100644 --- a/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts +++ b/libs/core-ui/src/lib/components/OverallMetricChartUtils.ts @@ -220,7 +220,6 @@ export function generateMetricsList( if (!chartProps) { return []; } - console.log(yAxisProperty); if (chartProps.yAxis.property === cohortKey) { const indexes = context.errorCohorts.map((errorCohort) => errorCohort.cohort.unwrap(JointDataset.IndexLabel) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.test.ts b/libs/core-ui/src/lib/util/calculateAUCData.test.ts index 573c7d3fa4..63ece9b0d8 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.test.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.test.ts @@ -42,106 +42,46 @@ describe("Test calculatePerClassROCData", () => { ); expect(result).toEqual({ points: [ - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 1 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 1, y: 0.6666666666666666 }, - { x: 0.8, y: 0.6666666666666666 }, - { x: 0.8, y: 0.6666666666666666 }, - { x: 0.8, y: 0.6666666666666666 }, - { x: 0.8, y: 0.3333333333333333 }, - { x: 0.6, y: 0.3333333333333333 }, - { x: 0.6, y: 0 }, - { x: 0.6, y: 0 }, - { x: 0.6, y: 0 }, - { x: 0.6, y: 0 }, - { x: 0.6, y: 0 }, - { x: 0.4, y: 0 }, - { x: 0.2, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 }, - { x: 0, y: 0 } + { + x: 1, + y: 1 + }, + { + x: 1, + y: 0.6666666666666666 + }, + { + x: 0.8, + y: 0.6666666666666666 + }, + { + x: 0.8, + y: 0.3333333333333333 + }, + { + x: 0.6, + y: 0.3333333333333333 + }, + { + x: 0.6, + y: 0 + }, + { + x: 0.4, + y: 0 + }, + { + x: 0.2, + y: 0 + }, + { + x: 0, + y: 0 + }, + { + x: 0, + y: 0 + } ] }); }); diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index 18d7cacdae..cfbe67c50c 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -3,7 +3,7 @@ import { localization } from "@responsible-ai/localization"; import { SeriesOptionsType } from "highcharts"; -import { orderBy, unzip } from "lodash"; +import { orderBy, sum, unzip, zipWith } from "lodash"; import { IDataset } from "../Interfaces/IDataset"; @@ -37,43 +37,7 @@ function getStaticROCData(): SeriesOptionsType[] { ]; } -export function calculatePerClassROCData( - probabilityY: number[], - binY: number[] -): IROCData { - const thresholds = probabilityY.sort(); - const points: IPoint[] = []; - for (const threshold of thresholds) { - let truePositives = 0; - let falsePositives = 0; - let trueNegatives = 0; - let falseNegatives = 0; - for (const [index, yProba] of probabilityY.entries()) { - // if the probability of predicting the positive label is greater than the - // threshold then it's a true positive. - // otherwise, it's a false positive - if (yProba < threshold) { - if (binY[index]) { - falseNegatives++; - } else { - trueNegatives++; - } - } else if (binY[index]) { - truePositives++; - } else { - falsePositives++; - } - } - addROCPoint( - truePositives, - falsePositives, - trueNegatives, - falseNegatives, - points - ); - } - points.push({ x: 0, y: 0 }); - +export function getConvexHullPoints(points: IPoint[]): IPoint[] { // construct the convex hull of the ROC points const sortedPoints = orderBy(points, ["x", "y"], ["asc", "desc"]); const convexHullPoints = []; @@ -93,8 +57,53 @@ export function calculatePerClassROCData( } i = frontIterator; } + return convexHullPoints; +} + +export function calculatePerClassROCData( + probabilityY: number[], + binY: number[] +): IROCData { + const yData = zipWith(probabilityY, binY, (p: number, y: number) => { + return { + binaryY: y, + probability: p + }; + }); + const thresholds = orderBy(yData, ["probability"], ["asc"]); + + const points: IPoint[] = []; + let truePositives = sum(binY); + let falsePositives = binY.length - truePositives; + let trueNegatives = 0; + let falseNegatives = 0; + addROCPoint( + truePositives, + falsePositives, + trueNegatives, + falseNegatives, + points + ); + for (const threshold of thresholds) { + if (threshold.binaryY) { + falseNegatives++; + truePositives--; + } else { + trueNegatives++; + falsePositives--; + } + addROCPoint( + truePositives, + falsePositives, + trueNegatives, + falseNegatives, + points + ); + } + points.push({ x: 0, y: 0 }); + const rocData: IROCData = { - points: convexHullPoints + points: getConvexHullPoints(points) }; return rocData; } diff --git a/libs/localization/src/lib/en.json b/libs/localization/src/lib/en.json index 9813507238..51cabb59e0 100644 --- a/libs/localization/src/lib/en.json +++ b/libs/localization/src/lib/en.json @@ -1806,6 +1806,11 @@ "micro": "Micro" }, "classSelectionDropdown": "Select class(es)", + "AUCChart": { + "title": "AUC", + "falsePositiveRate": "False positive rate", + "truePositiveRate": "True positive rate" + }, "iouThresholdDropdown": { "name": "IoU Threshold", "description": "Intersection over Union quantifies the degree of overlap between the prediction and ground truth bounding box of a detected object in an image. For example, setting an IoU threshold of 70% means that a prediction with greater than 70% overlap with ground truth is True, thus influencing the definition of prediction correctness and calculation of other performance metrics.", diff --git a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx index 3ae3b18759..44005b8b62 100644 --- a/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx +++ b/libs/model-assessment/src/lib/ModelAssessmentDashboard/Controls/ModelOverview/ModelOverviewChartPivot.tsx @@ -201,7 +201,6 @@ export class ModelOverviewChartPivot extends React.Component< // aucChartExperienceFlight, // this.context.featureFlights // ) && ( - // TODO: support multiclass: IsMulticlass(this.context.modelMetadata.modelType)) && ( Date: Wed, 2 Aug 2023 17:27:50 -0700 Subject: [PATCH 12/13] update naming --- libs/core-ui/src/lib/util/calculateAUCData.ts | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/libs/core-ui/src/lib/util/calculateAUCData.ts b/libs/core-ui/src/lib/util/calculateAUCData.ts index cfbe67c50c..237a1b4259 100644 --- a/libs/core-ui/src/lib/util/calculateAUCData.ts +++ b/libs/core-ui/src/lib/util/calculateAUCData.ts @@ -70,7 +70,7 @@ export function calculatePerClassROCData( probability: p }; }); - const thresholds = orderBy(yData, ["probability"], ["asc"]); + const sortedYData = orderBy(yData, ["probability"], ["asc"]); const points: IPoint[] = []; let truePositives = sum(binY); @@ -84,8 +84,8 @@ export function calculatePerClassROCData( falseNegatives, points ); - for (const threshold of thresholds) { - if (threshold.binaryY) { + for (const y of sortedYData) { + if (y.binaryY) { falseNegatives++; truePositives--; } else { From 2a3ca4c5335f91033c70de669e2ab6d48f9fe868 Mon Sep 17 00:00:00 2001 From: "Hannah Westra (SHE/HER)" Date: Thu, 3 Aug 2023 14:53:53 -0700 Subject: [PATCH 13/13] add legend and fix hover data --- libs/core-ui/src/lib/Highchart/BasicHighChart.tsx | 1 - .../Controls/ModelOverview/getAUCChartOptions.ts | 11 +++++++++++ 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/libs/core-ui/src/lib/Highchart/BasicHighChart.tsx b/libs/core-ui/src/lib/Highchart/BasicHighChart.tsx index eadd1becb5..f9095e415b 100644 --- a/libs/core-ui/src/lib/Highchart/BasicHighChart.tsx +++ b/libs/core-ui/src/lib/Highchart/BasicHighChart.tsx @@ -14,7 +14,6 @@ export class BasicHighChart extends React.Component { const defaultOptions = getDefaultHighchartOptions(getTheme()); const { className, id, fallback, configOverride = {}, theme } = this.props; const chartOptions = _.merge({}, defaultOptions, configOverride); - return ( {series.name}", + pointFormat: "
{point.x},{point.y}" + }, xAxis: { max: 1.05, min: -0.05,