From 8ee243f5521ca9d5c1b28636a48f2bfb61050862 Mon Sep 17 00:00:00 2001 From: Daniel Usvyat Date: Wed, 13 Nov 2024 11:13:54 +0200 Subject: [PATCH 1/6] Update pyproject.toml this is to attempt to fix sklearn dependabot alert --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 41d7b94ae..c5002ece4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ psutil = ">=5.7.0" scikit-learn = ">=1.0.0" dataclasses_json = ">=0.5.4" dill = "==0.3.6" -sktime = ">=0.24.0,<0.25.0" +sktime = ">=0.25.0,<0.26.0" statsforecast = "~=1.6.0" torch_optimizer = "==0.1.0" black = "==24.3.0" From ccb6dc10da540a8728c282bbfef133fde64c8d2d Mon Sep 17 00:00:00 2001 From: dusvyat Date: Wed, 13 Nov 2024 12:24:03 +0200 Subject: [PATCH 2/6] Update poetry.lock and dependency metadata Upgraded from Poetry 1.4.2 to 1.5.1 and removed 'category' fields from multiple dependencies. Added new frozendict and lxml files, and attributed specific versions for pytest-cov and certain low-level dependencies. --- poetry.lock | 262 +++++++--------------------------------------------- 1 file changed, 31 insertions(+), 231 deletions(-) diff --git a/poetry.lock b/poetry.lock index 64619da47..675490cca 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "adagio" version = "0.2.4" description = "The Dag IO Framework for Fugue projects" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -19,7 +18,6 @@ triad = ">=0.6.1" name = "aiohttp" version = "3.9.5" description = "Async http client/server framework (asyncio)" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -116,7 +114,6 @@ speedups = ["Brotli", "aiodns", "brotlicffi"] name = "aiosignal" version = "1.3.1" description = "aiosignal: a list of registered asynchronous callbacks" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -131,7 +128,6 @@ frozenlist = ">=1.1.0" name = "alembic" version = "1.13.1" description = "A database migration tool for SQLAlchemy." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -153,7 +149,6 @@ tz = ["backports.zoneinfo"] name = "appdirs" version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" optional = false python-versions = "*" files = [ @@ -165,7 +160,6 @@ files = [ name = "async-timeout" version = "4.0.3" description = "Timeout context manager for asyncio programs" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -177,7 +171,6 @@ files = [ name = "attrs" version = "23.2.0" description = "Classes Without Boilerplate" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -197,7 +190,6 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p name = "audioread" version = "3.0.1" description = "Multi-library, cross-platform audio decoding." -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -212,7 +204,6 @@ test = ["tox"] name = "autopep8" version = "2.1.0" description = "A tool that automatically formats Python code to conform to the PEP 8 style guide" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -228,7 +219,6 @@ tomli = {version = "*", markers = "python_version < \"3.11\""} name = "beautifulsoup4" version = "4.12.3" description = "Screen-scraping library" -category = "main" optional = true python-versions = ">=3.6.0" files = [ @@ -250,7 +240,6 @@ lxml = ["lxml"] name = "black" version = "24.3.0" description = "The uncompromising code formatter." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -297,7 +286,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "certifi" version = "2024.2.2" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -309,7 +297,6 @@ files = [ name = "cffi" version = "1.16.0" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -374,7 +361,6 @@ pycparser = "*" name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -474,7 +460,6 @@ files = [ name = "click" version = "8.1.7" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -489,7 +474,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "cloudpickle" version = "3.0.0" description = "Pickler class to extend the standard pickle.Pickler functionality" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -501,7 +485,6 @@ files = [ name = "cmdstanpy" version = "1.2.2" description = "Python interface to CmdStan" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -524,7 +507,6 @@ test = ["flake8", "mypy", "pylint", "pytest", "pytest-cov", "pytest-order", "xar name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -536,7 +518,6 @@ files = [ name = "colorlog" version = "6.5.0" description = "Add colours to the output of Python's logging module." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -554,7 +535,6 @@ development = ["black", "flake8", "mypy", "pytest", "types-colorama"] name = "combo" version = "0.1.3" description = "A Python Toolbox for Machine Learning Model Combination" -category = "main" optional = true python-versions = "*" files = [ @@ -574,7 +554,6 @@ scipy = "*" name = "contourpy" version = "1.1.1" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -646,7 +625,6 @@ test-no-images = ["pytest", "pytest-cov", "wurlitzer"] name = "convertdate" version = "2.4.0" description = "Converts between Gregorian dates and other calendar systems" -category = "main" optional = true python-versions = "<4,>=3.7" files = [ @@ -666,7 +644,6 @@ tests = ["coverage"] name = "cryptography" version = "42.0.7" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -721,7 +698,6 @@ test-randomorder = ["pytest-randomly"] name = "cycler" version = "0.12.1" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -737,7 +713,6 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"] name = "cython" version = "3.0.10" description = "The Cython compiler for writing C extensions in the Python language." -category = "main" optional = true python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" files = [ @@ -805,7 +780,6 @@ files = [ name = "dataclasses-json" version = "0.6.6" description = "Easily serialize dataclasses to and from JSON." -category = "main" optional = false python-versions = "<4.0,>=3.7" files = [ @@ -821,7 +795,6 @@ typing-inspect = ">=0.4.0,<1" name = "dataprep-ml" version = "24.5.1.2" description = "Automated dataframe analysis for Machine Learning pipelines." -category = "main" optional = false python-versions = "<3.12,>=3.8" files = [ @@ -844,7 +817,6 @@ type-infer = ">=0.0.16" name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "main" optional = true python-versions = ">=3.5" files = [ @@ -856,7 +828,6 @@ files = [ name = "dill" version = "0.3.6" description = "serialize all of python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -871,7 +842,6 @@ graph = ["objgraph (>=1.7.2)"] name = "dlx" version = "1.0.4" description = "Implementation of Donald Knuth's Dancing Links algorithm." -category = "main" optional = true python-versions = "*" files = [ @@ -882,7 +852,6 @@ files = [ name = "docplex" version = "2.27.239" description = "The IBM Decision Optimization CPLEX Modeling for Python" -category = "main" optional = true python-versions = "*" files = [ @@ -896,7 +865,6 @@ six = "*" name = "einops" version = "0.8.0" description = "A new flavour of deep learning operations" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -908,7 +876,6 @@ files = [ name = "ephem" version = "4.1.5" description = "Compute positions of the planets and stars" -category = "main" optional = true python-versions = "*" files = [ @@ -1001,7 +968,6 @@ files = [ name = "fastdtw" version = "0.3.4" description = "Dynamic Time Warping (DTW) algorithm with an O(N) time and memory complexity." -category = "main" optional = true python-versions = "*" files = [ @@ -1016,7 +982,6 @@ numpy = "*" name = "fastjsonschema" version = "2.19.1" description = "Fastest Python implementation of JSON schema" -category = "main" optional = true python-versions = "*" files = [ @@ -1031,7 +996,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc name = "filelock" version = "3.14.0" description = "A platform independent file lock." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1048,7 +1012,6 @@ typing = ["typing-extensions (>=4.8)"] name = "flake8" version = "7.0.0" description = "the modular source code checker: pep8 pyflakes and co" -category = "main" optional = true python-versions = ">=3.8.1" files = [ @@ -1065,7 +1028,6 @@ pyflakes = ">=3.2.0,<3.3.0" name = "fonttools" version = "4.51.0" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1131,7 +1093,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "frozendict" version = "2.4.4" description = "A simple immutable dictionary" -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -1165,6 +1126,8 @@ files = [ {file = "frozendict-2.4.4-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:d13b4310db337f4d2103867c5a05090b22bc4d50ca842093779ef541ea9c9eea"}, {file = "frozendict-2.4.4-cp39-cp39-win_amd64.whl", hash = "sha256:b3b967d5065872e27b06f785a80c0ed0a45d1f7c9b85223da05358e734d858ca"}, {file = "frozendict-2.4.4-cp39-cp39-win_arm64.whl", hash = "sha256:4ae8d05c8d0b6134bfb6bfb369d5fa0c4df21eabb5ca7f645af95fdc6689678e"}, + {file = "frozendict-2.4.4-py311-none-any.whl", hash = "sha256:705efca8d74d3facbb6ace80ab3afdd28eb8a237bfb4063ed89996b024bc443d"}, + {file = "frozendict-2.4.4-py312-none-any.whl", hash = "sha256:d9647563e76adb05b7cde2172403123380871360a114f546b4ae1704510801e5"}, {file = "frozendict-2.4.4.tar.gz", hash = "sha256:3f7c031b26e4ee6a3f786ceb5e3abf1181c4ade92dce1f847da26ea2c96008c7"}, ] @@ -1172,7 +1135,6 @@ files = [ name = "frozenlist" version = "1.4.1" description = "A list-like structure which implements collections.abc.MutableSequence" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1259,7 +1221,6 @@ files = [ name = "fs" version = "2.4.16" description = "Python's filesystem abstraction layer" -category = "main" optional = false python-versions = "*" files = [ @@ -1279,7 +1240,6 @@ scandir = ["scandir (>=1.5,<2.0)"] name = "fsspec" version = "2024.3.1" description = "File-system specification" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1318,7 +1278,6 @@ tqdm = ["tqdm"] name = "fugue" version = "0.9.0" description = "An abstraction layer for distributed computation" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1346,7 +1305,6 @@ sql = ["fugue-sql-antlr (>=0.2.0)", "jinja2", "qpd (>=0.4.4)", "sqlglot"] name = "gluonts" version = "0.13.9" description = "Probabilistic time series modeling in Python." -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -1364,7 +1322,7 @@ typing-extensions = ">=4.0,<5.0" [package.extras] arrow = ["pyarrow"] -dev = ["black", "click", "docutils (<=0.16)", "flaky (>=3.6,<4.0)", "flask (>=2.0,<3.0)", "fsspec (>=0.8,<0.9)", "furo (==2022.6.4.1)", "gunicorn (>=19.9,<20.0)", "holidays (>=0.9,<1.0)", "ipykernel (>=6.5,<7.0)", "ipython", "m2r2", "matplotlib", "myst-parser", "nbconvert (>=6.5.1,<6.6.0)", "nbsphinx (>=0.8.8,<0.9.0)", "notedown", "optuna (>=2.10,<3.0)", "orjson", "pandas (>=1.1)", "pyarrow", "pytest (>=6.0)", "pytest-cov (>=2.6.0,<2.7.0)", "pytest-runner (>=2.11,<3.0)", "pytest-timeout (>=1.3,<2.0)", "pytest-xdist (>=1.27,<2.0)", "recommonmark", "requests", "s3fs (>=0.5,<1.0)", "s3fs (>=0.6,<1.0)", "sagemaker (>=2.0,<3.0)", "sphinx (>=4.0,<5.0)", "ujson"] +dev = ["black", "click", "docutils (<=0.16)", "flaky (>=3.6,<4.0)", "flask (>=2.0,<3.0)", "fsspec (>=0.8,<0.9)", "furo (==2022.6.4.1)", "gunicorn (>=19.9,<20.0)", "holidays (>=0.9,<1.0)", "ipykernel (>=6.5,<7.0)", "ipython", "m2r2", "matplotlib", "myst-parser", "nbconvert (>=6.5.1,<6.6.0)", "nbsphinx (>=0.8.8,<0.9.0)", "notedown", "optuna (>=2.10,<3.0)", "orjson", "pandas (>=1.1)", "pyarrow", "pytest (>=6.0)", "pytest-cov (==2.6.*)", "pytest-runner (>=2.11,<3.0)", "pytest-timeout (>=1.3,<2.0)", "pytest-xdist (>=1.27,<2.0)", "recommonmark", "requests", "s3fs (>=0.5,<1.0)", "s3fs (>=0.6,<1.0)", "sagemaker (>=2.0,<3.0)", "sphinx (>=4.0,<5.0)", "ujson"] docs = ["black", "click", "docutils (<=0.16)", "furo (==2022.6.4.1)", "holidays (>=0.9,<1.0)", "ipykernel (>=6.5,<7.0)", "ipython", "m2r2", "matplotlib", "myst-parser", "nbconvert (>=6.5.1,<6.6.0)", "nbsphinx (>=0.8.8,<0.9.0)", "notedown", "optuna (>=2.10,<3.0)", "orjson", "pytest-runner (>=2.11,<3.0)", "recommonmark", "sphinx (>=4.0,<5.0)"] mxnet = ["mxnet (>=1.7,<2.0)", "numpy (<1.24)"] pro = ["orjson", "pyarrow"] @@ -1377,7 +1335,6 @@ torch = ["protobuf (>=3.19.0,<3.20.0)", "pytorch-lightning (>=1.5,<3)", "scipy ( name = "graphviz" version = "0.8.4" description = "Simple Python interface for Graphviz" -category = "main" optional = true python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" files = [ @@ -1394,7 +1351,6 @@ test = ["mock (>=2)", "pytest (>=3.4)", "pytest-cov", "pytest-mock (>=1.8)"] name = "greenlet" version = "3.0.3" description = "Lightweight in-process concurrent programming" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1466,7 +1422,6 @@ test = ["objgraph", "psutil"] name = "h5py" version = "3.2.1" description = "Read and write HDF5 files from Python" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -1492,7 +1447,6 @@ numpy = [ name = "holidays" version = "0.48" description = "Generate and work with holidays in Python" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1507,7 +1461,6 @@ python-dateutil = "*" name = "html5lib" version = "1.1" description = "HTML parser based on the WHATWG HTML specification" -category = "main" optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -1529,7 +1482,6 @@ lxml = ["lxml"] name = "huggingface-hub" version = "0.23.0" description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" -category = "main" optional = false python-versions = ">=3.8.0" files = [ @@ -1564,7 +1516,6 @@ typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "t name = "idna" version = "3.7" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -1576,7 +1527,6 @@ files = [ name = "importlib-metadata" version = "7.1.0" description = "Read metadata from Python packages" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1596,7 +1546,6 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", name = "importlib-resources" version = "6.4.0" description = "Read resources from Python packages" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1615,7 +1564,6 @@ testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "p name = "inflection" version = "0.5.1" description = "A port of Ruby on Rails inflector to Python" -category = "main" optional = true python-versions = ">=3.5" files = [ @@ -1627,7 +1575,6 @@ files = [ name = "intel-openmp" version = "2021.4.0" description = "Intel OpenMP* Runtime Library" -category = "main" optional = false python-versions = "*" files = [ @@ -1642,7 +1589,6 @@ files = [ name = "jinja2" version = "3.1.4" description = "A very fast and expressive template engine." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1660,7 +1606,6 @@ i18n = ["Babel (>=2.7)"] name = "joblib" version = "1.4.2" description = "Lightweight pipelining with Python functions" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1672,7 +1617,6 @@ files = [ name = "jsonschema" version = "4.22.0" description = "An implementation of JSON Schema validation for Python" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1696,7 +1640,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jsonschema-specifications" version = "2023.12.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1712,7 +1655,6 @@ referencing = ">=0.31.0" name = "kiwisolver" version = "1.4.5" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1826,7 +1768,6 @@ files = [ name = "librosa" version = "0.8.1" description = "Python module for audio and music processing" -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -1849,14 +1790,13 @@ soundfile = ">=0.10.2" [package.extras] display = ["matplotlib (>=1.5)"] -docs = ["matplotlib (>=2.0.0,<3.3)", "numba (<0.50)", "numpydoc", "presets", "sphinx (!=1.3.1)", "sphinx-gallery (>=0.7)", "sphinx-multiversion (>=0.2.3)", "sphinx-rtd-theme (>=0.5.0,<0.6.0)", "spinxcontrib-svg2pdfconverter"] +docs = ["matplotlib (>=2.0.0,<3.3)", "numba (<0.50)", "numpydoc", "presets", "sphinx (!=1.3.1)", "sphinx-gallery (>=0.7)", "sphinx-multiversion (>=0.2.3)", "sphinx-rtd-theme (==0.5.*)", "spinxcontrib-svg2pdfconverter"] tests = ["contextlib2", "matplotlib (>=3.0)", "pytest", "pytest-cov", "pytest-mpl", "samplerate", "soxr"] [[package]] name = "lightgbm" version = "4.3.0" description = "LightGBM Python Package" -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -1881,7 +1821,6 @@ scikit-learn = ["scikit-learn (!=0.22.0)"] name = "lightning-utilities" version = "0.11.2" description = "Lightning toolbox for across the our ecosystem." -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1903,7 +1842,6 @@ typing = ["mypy (>=1.0.0)", "types-setuptools"] name = "llvmlite" version = "0.41.1" description = "lightweight wrapper around basic LLVM 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"tabulate"] -forecasting = ["arch (>=5.6,<6.3)", "pmdarima (>=1.8,!=1.8.1,<2.1)", "prophet (>=1.1,<1.2)", "skpro (>=2,<2.2)", "statsforecast (>=0.5.2,<1.7)", "statsmodels (>=0.12.1,<0.15)", "tbats (>=1.1,<1.2)"] +docs = ["Sphinx (!=7.2.0,<8.0.0)", "jupyter", "myst-parser", "nbsphinx (>=0.8.6)", "numpydoc", "pydata-sphinx-theme", "sphinx-copybutton", "sphinx-design (<0.6.0)", "sphinx-gallery (<0.16.0)", "sphinx-issues (<5.0.0)", "tabulate"] +forecasting = ["arch (>=5.6,<6.4)", "pmdarima (>=1.8,!=1.8.1,<2.1)", "prophet (>=1.1,<1.2)", "skpro (>=2,<2.2)", "statsforecast (>=0.5.2,<1.7)", "statsmodels (>=0.12.1,<0.15)", "tbats (>=1.1,<1.2)"] mlflow = ["mlflow"] mlflow-tests = ["boto3", "botocore", "mlflow", "moto"] networks = ["keras-self-attention (>=0.51,<0.52)", "tensorflow (>=2,<=2.14)"] @@ -4738,13 +4579,12 @@ pandas1 = ["pandas (<2.0.0)"] param-est = ["seasonal (>=0.3.1,<0.4)", "statsmodels (>=0.12.1,<0.15)"] regression = ["numba (>=0.53,<0.59)", "tensorflow (>=2,<=2.14)"] tests = ["pytest (>=7.4,<7.5)", "pytest-cov (>=4.1,<4.2)", "pytest-randomly (>=3.15,<3.16)", "pytest-timeout (>=2.1,<2.3)", "pytest-xdist (>=3.3,<3.6)"] -transformations = ["esig (>=0.9.7,<0.10)", "filterpy (>=1.4.5,<1.5)", "holidays (>=0.29,<0.40)", "mne (>=1.5,<1.6)", "numba (>=0.53,<0.59)", "pycatch22 (>=0.4,<0.4.5)", "pykalman-bardo (>=0.9.7,<0.10)", "statsmodels (>=0.12.1,<0.15)", "stumpy (>=1.5.1,<1.13)", "tsfresh (>=0.17,<0.21)"] +transformations = ["esig (>=0.9.7,<0.10)", "filterpy (>=1.4.5,<1.5)", "holidays (>=0.29,<0.42)", "mne (>=1.5,<1.7)", "numba (>=0.53,<0.59)", "pycatch22 (>=0.4,<0.4.4)", "pykalman-bardo (>=0.9.7,<0.10)", "statsmodels (>=0.12.1,<0.15)", "stumpy (>=1.5.1,<1.13)", "tsfresh (>=0.17,<0.21)"] [[package]] name = "slicer" version = "0.0.7" description = "A small package for big slicing." -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -4756,7 +4596,6 @@ files = [ name = "soundfile" version = "0.12.1" description = "An audio library based on libsndfile, CFFI and NumPy" -category = "main" optional = true python-versions = "*" files = [ @@ -4780,7 +4619,6 @@ numpy = ["numpy"] name = "soupsieve" version = "2.5" description = "A modern CSS selector implementation for Beautiful Soup." -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -4792,7 +4630,6 @@ files = [ name = "sqlalchemy" version = "2.0.30" description = "Database Abstraction Library" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -4848,7 +4685,7 @@ files = [ ] [package.dependencies] -greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""} +greenlet = {version = "!=0.4.17", markers = "platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\""} typing-extensions = ">=4.6.0" [package.extras] @@ -4880,7 +4717,6 @@ sqlcipher = ["sqlcipher3_binary"] name = "sspilib" version = "0.1.0" description = "SSPI API bindings for Python" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -4920,7 +4756,6 @@ files = [ name = "stanio" version = "0.5.0" description = "Utilities for preparing Stan inputs and processing Stan outputs" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -4939,7 +4774,6 @@ ujson = ["ujson (>=5.5.0)"] name = "statsforecast" version = "1.6.0" description = "Time series forecasting suite using statistical models" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -4969,7 +4803,6 @@ spark = ["fugue[spark] (>=0.8.1)"] name = "statsmodels" version = "0.14.1" description = "Statistical computations and models for Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5023,7 +4856,6 @@ docs = ["ipykernel", "jupyter-client", "matplotlib", "nbconvert", "nbformat", "n name = "suod" version = "0.1.3" description = "A Scalable Framework for Unsupervised Outlier Detection (Anomaly Detection)" -category = "main" optional = true python-versions = "*" files = [ @@ -5045,7 +4877,6 @@ scipy = ">=0.19.1" name = "symengine" version = "0.11.0" description = "Python library providing wrappers to SymEngine" -category = "main" optional = true python-versions = ">=3.8,<4" files = [ @@ -5090,7 +4921,6 @@ files = [ name = "sympy" version = "1.12" description = "Computer algebra system (CAS) in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5105,7 +4935,6 @@ mpmath = ">=0.19" name = "tab-transformer-pytorch" version = "0.3.0" description = "Tab Transformer - Pytorch" -category = "main" optional = false python-versions = "*" files = [ @@ -5121,7 +4950,6 @@ torch = ">=1.6" name = "tbb" version = "2021.12.0" description = "Intel® oneAPI Threading Building Blocks (oneTBB)" -category = "main" optional = false python-versions = "*" files = [ @@ -5135,7 +4963,6 @@ files = [ name = "tensorboardx" version = "2.6.2.2" description = "TensorBoardX lets you watch Tensors Flow without Tensorflow" -category = "main" optional = true python-versions = "*" files = [ @@ -5152,7 +4979,6 @@ protobuf = ">=3.20" name = "threadpoolctl" version = "3.5.0" description = "threadpoolctl" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5164,7 +4990,6 @@ files = [ name = "tokenizers" version = "0.19.1" description = "" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -5282,7 +5107,6 @@ testing = ["black (==22.3)", "datasets", "numpy", "pytest", "requests", "ruff"] name = "toml" version = "0.10.2" description = "Python Library for Tom's Obvious, Minimal Language" -category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -5294,7 +5118,6 @@ files = [ name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -5306,7 +5129,6 @@ files = [ name = "toolz" version = "0.12.1" description = "List processing tools and functional utilities" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -5318,7 +5140,6 @@ files = [ name = "torch" version = "2.3.0" description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration" -category = "main" optional = false python-versions = ">=3.8.0" files = [ @@ -5373,7 +5194,6 @@ optree = ["optree (>=0.9.1)"] name = "torch-optimizer" version = "0.1.0" description = "pytorch-optimizer" -category = "main" optional = false python-versions = ">=3.6.0" files = [ @@ -5389,7 +5209,6 @@ torch = ">=1.1.0" name = "torchmetrics" version = "1.4.0.post0" description = "PyTorch native Metrics" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -5420,7 +5239,6 @@ visual = ["SciencePlots (>=2.0.0)", "matplotlib (>=3.3.0)"] name = "torchvision" version = "0.18.0" description = "image and video datasets and models for torch deep learning" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -5448,7 +5266,7 @@ files = [ [package.dependencies] numpy = "*" -pillow = ">=5.3.0,<8.3.0 || >=8.4.0" +pillow = ">=5.3.0,<8.3.dev0 || >=8.4.dev0" torch = "2.3.0" [package.extras] @@ -5458,7 +5276,6 @@ scipy = ["scipy"] name = "tqdm" version = "4.66.4" description = "Fast, Extensible Progress Meter" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -5479,7 +5296,6 @@ telegram = ["requests"] name = "transformers" version = "4.40.2" description = "State-of-the-art Machine Learning for JAX, PyTorch and TensorFlow" -category = "main" optional = false python-versions = ">=3.8.0" files = [ @@ -5548,7 +5364,6 @@ vision = ["Pillow (>=10.0.1,<=15.0)"] name = "triad" version = "0.9.6" description = "A collection of python utils for Fugue projects" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5571,7 +5386,6 @@ ciso8601 = ["ciso8601"] name = "triton" version = "2.3.0" description = "A language and compiler for custom Deep Learning operations" -category = "main" optional = false python-versions = "*" files = [ @@ -5595,7 +5409,6 @@ tutorials = ["matplotlib", "pandas", "tabulate", "torch"] name = "tweedledum" version = "1.1.1" description = "A library for synthesizing and manipulating quantum circuits" -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -5648,7 +5461,6 @@ files = [ name = "type-infer" version = "0.0.20" description = "Automated type inference for Machine Learning pipelines." -category = "main" optional = false python-versions = "<3.12,>=3.8" files = [ @@ -5672,7 +5484,6 @@ toml = ">=0.10.2,<0.11.0" name = "typing-extensions" version = "4.11.0" description = "Backported and Experimental Type Hints for Python 3.8+" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5684,7 +5495,6 @@ files = [ name = "typing-inspect" version = "0.9.0" description = "Runtime inspection utilities for typing module." -category = "main" optional = false python-versions = "*" files = [ @@ -5700,7 +5510,6 @@ typing-extensions = ">=3.7.4" name = "tzdata" version = "2024.1" description = "Provider of IANA time zone data" -category = "main" optional = false python-versions = ">=2" files = [ @@ -5712,7 +5521,6 @@ files = [ name = "urllib3" version = "2.2.1" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5730,7 +5538,6 @@ zstd = ["zstandard (>=0.18.0)"] name = "utilsforecast" version = "0.1.9" description = "Forecasting utilities" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -5753,7 +5560,6 @@ scalers = ["numba", "scipy"] name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -category = "main" optional = true python-versions = "*" files = [ @@ -5765,7 +5571,6 @@ files = [ name = "websocket-client" version = "1.8.0" description = "WebSocket client for Python with low level API options" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -5782,7 +5587,6 @@ test = ["websockets"] name = "wheel" version = "0.43.0" description = "A built-package format for Python" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -5797,7 +5601,6 @@ test = ["pytest (>=6.0.0)", "setuptools (>=65)"] name = "xgboost" version = "1.7.6" description = "XGBoost Python Package" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5825,7 +5628,6 @@ scikit-learn = ["scikit-learn"] name = "yarl" version = "1.9.4" description = "Yet another URL library" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -5929,7 +5731,6 @@ multidict = ">=4.0" name = "yfinance" version = "0.2.38" description = "Download market data from Yahoo! Finance API" -category = "main" optional = true python-versions = "*" files = [ @@ -5958,7 +5759,6 @@ repair = ["scipy (>=1.6.3)"] name = "zipp" version = "3.18.1" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -5982,4 +5782,4 @@ xai = ["pyod", "shap", "suod"] [metadata] lock-version = "2.0" python-versions = ">=3.8.1,<3.12" -content-hash = "1a5c955843c1fc820b401b64b6480f3e68dab3556eb6dc75ff2f4ae3ce5c7999" +content-hash = "b250da436572d6802ad826a5b7918550f599cf9dd308d8b537edc0dc50b34a59" From 829bfb59abca40b2eafecc907750b33d27c6e526 Mon Sep 17 00:00:00 2001 From: Daniel Usvyat Date: Wed, 13 Nov 2024 14:44:35 +0200 Subject: [PATCH 3/6] Update pyproject.toml bump version --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c5002ece4..16574601a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "lightwood" -version = "24.5.2.0" +version = "24.5.2.1" description = "Lightwood is Legos for Machine Learning." authors = ["MindsDB Inc."] license = "GPL-3.0-only" From 56941595955e4eb85cbfb71b5cc8280fe4cb4344 Mon Sep 17 00:00:00 2001 From: Minura Punchihewa Date: Wed, 27 Nov 2024 12:16:48 +0530 Subject: [PATCH 4/6] pinned torch to >=2.4.1 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 16574601a..1bf81b67a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,7 +18,7 @@ mindsdb-evaluator = ">=0.0.13" numpy = ">1.23.0" nltk = ">=3.8, <3.9" pandas = ">=2.0.0, <2.1.0" -torch = ">=2.0.0" +torch = ">=2.4.1" requests = ">=2.0.0" transformers = ">=4.34.0" optuna = ">=3.1.0,<4.0.0" From c01d0d14c5040195b9d7bd064a58bef8655618e9 Mon Sep 17 00:00:00 2001 From: Minura Punchihewa Date: Wed, 27 Nov 2024 12:37:23 +0530 Subject: [PATCH 5/6] updated poetry.lock --- poetry.lock | 181 +++++++++++++++++++++------------------------------- 1 file changed, 74 insertions(+), 107 deletions(-) diff --git a/poetry.lock b/poetry.lock index 675490cca..5736d3760 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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cat out.txt | grep -zvqi error && echo 'no errors detected' || exit - - name: Make the docs - run: | - cd docssrc && make github + - name: install all dependencies + run: | + sudo apt install pandoc + python -m pip install --upgrade pip + pip install 'Sphinx==6.2.1' 'sphinx-autoapi==3.0.0' 'sphinx-autodoc-typehints' 'sphinx-code-include' 'sphinx-rtd-theme' 'sphinxcontrib-applehelp' 'sphinxcontrib-devhelp' 'sphinxcontrib-htmlhelp' 'sphinxcontrib-jsmath' 'sphinxcontrib-napoleon' 'sphinxcontrib-qthelp' 'sphinxcontrib-serializinghtml' autoapi nbsphinx myst_parser pandoc jupyter matplotlib imblearn fsspec + pip install --no-cache-dir -e . + - name: Re-run notebooks + run: | + find . -iname '*.ipynb' -exec jupyter nbconvert --to notebook --inplace --execute {} \; > out.txt 2>&1 + cat out.txt + cat out.txt | grep -zvqi exception && echo 'no errors detected' || exit + cat out.txt | grep -zvqi error && echo 'no errors detected' || exit + - name: Make the docs + run: | + cd docssrc && make 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