You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm trying use your docker within a aws-batch job, but I keep getting key not found error (the key does exist). Below is what I'm running and snippet from the error.
Pull image
sudo docker pull fusera/fusera:alpine
Setup mounting directory and list samples to mount
key=$(ls ~/*ngc)
sudo docker run b22c00f65c8b fusera mount -d -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 &
Print log file
cat ~/TOPMed-Test-Mounting.log
DEBUG 2020/04/23 10:58:19 errors.go:48: couldn't open ngc file at: /home/ec2-user/prj_XXXXX.ngc: open /home/ec2-user/prj_XXXX.ngc: no such file or directory
The text was updated successfully, but these errors were encountered:
Just to extend this, if I add my local directory I get a "try running modprobe fuse" error. This is the same message I get when I try to install & run fusera mount within an AWS-batch job.
I know there is a dbGaP AMI image, but for whatever reason my jobs never move past the "RUNNABLE" state even though the instances are spun up. The OS's are the same if I use "amazon:linux" and my jobs move through the states fine, but always crash with the "modprobe fuse" error even after installing it and running it.
Run fusera mount
sudo docker run -v /home/ec2-user/:/home/ec2-user/ b22c00f65c8b fusera mount -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 &
[2] 19086
Print log
cat ~/TOPMed-Test-Mounting.log
stderr:
fusermount: fuse device not found, try 'modprobe fuse' first
Hi,
I'm trying use your docker within a aws-batch job, but I keep getting key not found error (the key does exist). Below is what I'm running and snippet from the error.
Pull image
sudo docker pull fusera/fusera:alpine
Setup mounting directory and list samples to mount
mkdir -p ~/TOPMed_test/
echo -e "SRR6769030\nSRR6769027\nSRR6769028\nSRR6769029" > ~/testing.txt
Mount data
key=$(ls ~/*ngc)
sudo docker run b22c00f65c8b fusera mount -d -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 &
Print log file
cat ~/TOPMed-Test-Mounting.log
DEBUG 2020/04/23 10:58:19 errors.go:48: couldn't open ngc file at: /home/ec2-user/prj_XXXXX.ngc: open /home/ec2-user/prj_XXXX.ngc: no such file or directory
The text was updated successfully, but these errors were encountered: