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Hi. I tried to use easyfig.py from the command line. It worked fine for tblastx, but it seems not to be working for blastn. Apparently, makeblastdb is not been triggered when the option is blastn. Could you please check it?
When using blastn, this was the result:
/bin/sh: 1: makeblastdb: not found
makeblastdb -dbtype nucl -out temp_easyfig/tempdb -in temp_easyfig/2.easyfig.fa
BLAST Database error: No alias or index file found for nucleotide database [temp_easyfig/tempdb] in search path [/home/user/EasyFig_CommandLine::]
Minimum blast hit reported: 101%
When using tblastx, it worked:
Building a new DB, current time: 04/20/2022 13:02:35
New DB name: /home/user/EasyFig_CommandLine/temp_easyfig/tempdb
New DB title: 2.easyfig.fa
Sequence type: Nucleotide
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 1 sequences in 0.000867128 seconds.
Minimum blast hit reported: 24.39%
I am using Linux, all blast suite files are in the path
The text was updated successfully, but these errors were encountered:
Hi. I tried to use easyfig.py from the command line. It worked fine for tblastx, but it seems not to be working for blastn. Apparently, makeblastdb is not been triggered when the option is blastn. Could you please check it?
/bin/sh: 1: makeblastdb: not found
makeblastdb -dbtype nucl -out temp_easyfig/tempdb -in temp_easyfig/2.easyfig.fa
BLAST Database error: No alias or index file found for nucleotide database [temp_easyfig/tempdb] in search path [/home/user/EasyFig_CommandLine::]
Minimum blast hit reported: 101%
Building a new DB, current time: 04/20/2022 13:02:35
New DB name: /home/user/EasyFig_CommandLine/temp_easyfig/tempdb
New DB title: 2.easyfig.fa
Sequence type: Nucleotide
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 1 sequences in 0.000867128 seconds.
Minimum blast hit reported: 24.39%
I am using Linux, all blast suite files are in the path
The text was updated successfully, but these errors were encountered: