From b827b367f90156f53bedcd7d41310d60e172e58c Mon Sep 17 00:00:00 2001 From: Diego Manzanas Date: Fri, 16 Aug 2024 16:40:45 -0500 Subject: [PATCH] Include 3d shape results --- .../Submission/WiP_3d/functions/add_voxels.m | 8 +- .../WiP_3d/functions/remove_voxels.m | 8 +- .../plots/fracture/avgTime_bright_10.png | Bin 23615 -> 23615 bytes .../plots/fracture/avgTime_bright_2.png | Bin 23320 -> 23320 bytes .../plots/fracture/avgTime_bright_25.png | Bin 25299 -> 25299 bytes .../plots/fracture/avgTime_bright_5.png | Bin 23713 -> 23713 bytes .../WiP_3d/plots/fracture/avgTime_dark_10.png | Bin 25444 -> 25444 bytes .../WiP_3d/plots/fracture/avgTime_dark_2.png | Bin 26587 -> 26587 bytes .../WiP_3d/plots/fracture/avgTime_dark_25.png | Bin 29383 -> 29383 bytes .../WiP_3d/plots/fracture/avgTime_dark_5.png | Bin 24764 -> 24764 bytes .../plots/fracture/verification_bright_10.png | Bin 23865 -> 23865 bytes .../plots/fracture/verification_bright_2.png | Bin 23865 -> 23865 bytes 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.../results/verification_adrenal_add_1_50.mat | Bin 0 -> 634 bytes .../verification_adrenal_add_1_500.mat | Bin 0 -> 631 bytes .../verification_adrenal_remove_1_100.mat | Bin 0 -> 625 bytes .../verification_adrenal_remove_1_1000.mat | Bin 0 -> 633 bytes .../verification_adrenal_remove_1_50.mat | Bin 0 -> 623 bytes .../verification_adrenal_remove_1_500.mat | Bin 0 -> 632 bytes .../results/verification_vessel_add_1_100.mat | Bin 0 -> 621 bytes .../verification_vessel_add_1_1000.mat | Bin 0 -> 623 bytes .../results/verification_vessel_add_1_50.mat | Bin 0 -> 620 bytes .../results/verification_vessel_add_1_500.mat | Bin 0 -> 626 bytes .../verification_vessel_remove_1_100.mat | Bin 0 -> 625 bytes .../verification_vessel_remove_1_1000.mat | Bin 0 -> 624 bytes .../verification_vessel_remove_1_50.mat | Bin 0 -> 627 bytes .../verification_vessel_remove_1_500.mat | Bin 0 -> 624 bytes code/nnv/examples/Submission/WiP_3d/run_all.m | 6 +- .../Submission/WiP_3d/verify_adrenal.m | 1 + .../Submission/WiP_3d/verify_vessel.m | 2 +- ...lize_results.m => visualize_results_gen.m} | 13 +- .../WiP_3d/visualize_results_shape.m | 196 ++++++++++++++++++ 87 files changed, 215 insertions(+), 19 deletions(-) create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_add_1_100.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_add_1_1000.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_add_1_50.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_add_1_500.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_remove_1_100.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_remove_1_1000.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_remove_1_50.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_adrenal_remove_1_500.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_add_1_100.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_add_1_1000.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_add_1_50.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_add_1_500.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_remove_1_100.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_remove_1_1000.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_remove_1_50.mat create mode 100644 code/nnv/examples/Submission/WiP_3d/results/verification_vessel_remove_1_500.mat rename code/nnv/examples/Submission/WiP_3d/{visualize_results.m => visualize_results_gen.m} (96%) create mode 100644 code/nnv/examples/Submission/WiP_3d/visualize_results_shape.m diff --git a/code/nnv/examples/Submission/WiP_3d/functions/add_voxels.m b/code/nnv/examples/Submission/WiP_3d/functions/add_voxels.m index 159f5f68a..2c50ed1c9 100644 --- a/code/nnv/examples/Submission/WiP_3d/functions/add_voxels.m +++ b/code/nnv/examples/Submission/WiP_3d/functions/add_voxels.m @@ -5,17 +5,15 @@ % Return a VolumeStar of a brightening attack on a few pixels % Initialize vars - ct = 0; % keep track of pixels modified - flag = 0; % determine when to stop modifying pixels vol = single(vol); at_vol = vol; % we can find the edge of the shape - shape = edge3(vol); % this should be okay for this data, but let's test it + shape = edge3(vol,'approxcanny',0.6); % this should be okay for this data, but let's test it % select a random pixel - idxs = find(shape) && ~find(vol); - voxels = max(voxels,length(idxs)); + idxs = setdiff(find(shape), find(vol)); + voxels = min(voxels,length(idxs)); % For now, we can select the first ones at_vol(idxs(1:voxels)) = 255; diff --git a/code/nnv/examples/Submission/WiP_3d/functions/remove_voxels.m b/code/nnv/examples/Submission/WiP_3d/functions/remove_voxels.m index b98ba0353..dc5703098 100644 --- a/code/nnv/examples/Submission/WiP_3d/functions/remove_voxels.m +++ b/code/nnv/examples/Submission/WiP_3d/functions/remove_voxels.m @@ -5,17 +5,15 @@ % Return a VolumeStar of a brightening attack on a few pixels % Initialize vars - ct = 0; % keep track of pixels removed - flag = 0; % determine when to stop modifying pixels vol = single(vol); at_vol = vol; % we can find the edge of the shape - shape = edge3(vol); % this should be okay for this data, but let's test it + shape = edge3(vol,'approxcanny',0.6); % this should be okay for this data, but let's test it % select a random pixel - idxs = find(shape) && find(vol); - voxels = max(voxels,length(idxs)); + idxs = intersect(find(shape),find(vol)); + voxels = min(voxels,length(idxs)); % For now, we can select the first ones 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