From 55ffebf87d35356b83b7d59dba2f5f2b6f0679de Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 14:49:01 -0400
Subject: [PATCH 1/7] Update requirements.txt

---
 requirements.txt | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/requirements.txt b/requirements.txt
index 2fb4273d9..ab0228cfe 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1 +1,10 @@
 icecream
+configparser
+numpy
+biopython
+progressbar2
+tqdm
+csvsort
+simplejson
+urllib3
+versioneer

From 1b51939cc93eaedbc6bbd8fdd8c3991d09e07c50 Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 14:49:58 -0400
Subject: [PATCH 2/7] Update .scrutinizer.yml

---
 .scrutinizer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.scrutinizer.yml b/.scrutinizer.yml
index 17df5781d..32578604e 100644
--- a/.scrutinizer.yml
+++ b/.scrutinizer.yml
@@ -18,5 +18,5 @@ build:
         analysis:
             tests:
                 override:
-                  - pip install -e .
+                  - pip install -r requirements.txt
                   - py-scrutinizer-run

From 02f2c70c4ffac83f12d94ce661bb81e67ca7da07 Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 14:52:20 -0400
Subject: [PATCH 3/7] Update requirements.txt

---
 requirements.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/requirements.txt b/requirements.txt
index ab0228cfe..6ea637cbd 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -8,3 +8,4 @@ csvsort
 simplejson
 urllib3
 versioneer
+wget

From c8662100b4321af3eaa61838c207f4363321d5fc Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 15:01:19 -0400
Subject: [PATCH 4/7] test.sh - test exit(1)

---
 test.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/test.sh b/test.sh
index bcf789077..e4729e696 100755
--- a/test.sh
+++ b/test.sh
@@ -2,6 +2,8 @@
 set -v
 export PYTHONPATH=$PYTHONPATH:$(pwd)
 
+exit(1)
+
 cd rna_tools
 
 python update_readme.py

From 9688a54445ecf90303a3ea2221cef89ce9128126 Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 15:02:56 -0400
Subject: [PATCH 5/7] Update test.sh

---
 test.sh | 2 --
 1 file changed, 2 deletions(-)

diff --git a/test.sh b/test.sh
index e4729e696..bcf789077 100755
--- a/test.sh
+++ b/test.sh
@@ -2,8 +2,6 @@
 set -v
 export PYTHONPATH=$PYTHONPATH:$(pwd)
 
-exit(1)
-
 cd rna_tools
 
 python update_readme.py

From b90c10768f8d09438bbc810fc3bc80e4a480549b Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 15:21:07 -0400
Subject: [PATCH 6/7] Update setup.py

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 955acc22d..7020bc5bf 100644
--- a/setup.py
+++ b/setup.py
@@ -185,7 +185,7 @@
         'biopython',
         'progressbar2',
         'tqdm',
-        'icecream',
+       # 'icecream',
         'csvsort',
         # keep pip minimal
         #'sphinx==1.6.7',

From 5f99b81a4e55e5f9c8fd67ffe794c5918e3bda72 Mon Sep 17 00:00:00 2001
From: Marcin Magnus <mag_dex@o2.pl>
Date: Tue, 16 Apr 2024 15:24:06 -0400
Subject: [PATCH 7/7] Update setup.py

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 7020bc5bf..955acc22d 100644
--- a/setup.py
+++ b/setup.py
@@ -185,7 +185,7 @@
         'biopython',
         'progressbar2',
         'tqdm',
-       # 'icecream',
+        'icecream',
         'csvsort',
         # keep pip minimal
         #'sphinx==1.6.7',