Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error of using new_gff_validator.pl #1

Open
nottwy opened this issue Oct 13, 2017 · 1 comment
Open

Error of using new_gff_validator.pl #1

nottwy opened this issue Oct 13, 2017 · 1 comment

Comments

@nottwy
Copy link

nottwy commented Oct 13, 2017

Hi,

Because I want to try this validator so I spend lots of time resolving the dependency of this software. But I encountered a problem finally. This is the error message:

Error in tempfile() using template /modencode/raw/tmp/www1/XXXXXXXXXX.sqlite: Parent directory (/modencode/raw/tmp/www1/) does not exist at ModENCODE/Cache.pm line 44.

Can you help me solve this problem?

@aubreybailey
Copy link

Similarly spent a long time messing with dependencies to get to this:

 validator/new_gff_validator.pl combined_NT.gff3
Unescaped left brace in regex is illegal here in regex; marked by <-- HERE in m/# TODO - if can\('as_'.\$typename\) { <-- HERE \.\.\.}/ at validator/ModENCODE/Validator/Data/URL_mediawiki_expansion.pm line 111.
Compilation failed in require at validator/ModENCODE/Validator/Data.pm line 131.
BEGIN failed--compilation aborted at validator/ModENCODE/Validator/Data.pm line 131.
Compilation failed in require at validator/new_gff_validator.pl line 21.
BEGIN failed--compilation aborted at validator/new_gff_validator.pl line 21.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants