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Merge pull request #573 from monarch-initiative/build-2024-06-17-main
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Build, `main` 2024-06-17
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@twhetzel
twhetzel authored Jun 18, 2024
2 parents 8ef746a + 14ca878 commit 5e6f26a
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6 changes: 3 additions & 3 deletions docs/metrics/doid.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/doid.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/doid.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 27 |
| Axioms | 110948 |
| Axioms | 116206 |
| Logical axioms | 16161 |
| Classes | 13124 |
| Object properties | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 81636 |
| AnnotationAssertion | 86894 |
| SubAnnotationPropertyOf | 1 |
| DisjointClasses | 26 |
| Declaration | 13150 |
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2 changes: 1 addition & 1 deletion docs/metrics/gard.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/gard.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/gard.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10cm.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/icd10cm.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/icd10cm.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10who.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/icd10who.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/icd10who.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd11foundation.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/icd11foundation.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/icd11foundation.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/ncit.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/ncit.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/ncit.owl

### Entities and axioms

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20 changes: 10 additions & 10 deletions docs/metrics/omim.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/omim.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/omim.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 18 |
| Axioms | 346158 |
| Logical axioms | 22739 |
| Classes | 19512 |
| Axioms | 346174 |
| Logical axioms | 22747 |
| Classes | 19514 |
| Object properties | 7 |
| Data properties | 0 |
| Individuals | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 303885 |
| AnnotationAssertion | 303891 |
| SubAnnotationPropertyOf | 1 |
| Declaration | 19533 |
| SubClassOf | 22739 |
| Declaration | 19535 |
| SubClassOf | 22747 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 18066 |
| prefix_unknown | 18068 |
| oboInOwl | 4 |
| owl | 2 |
| xsd | 1 |
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| Metric | Value |
| ------ | ----- |
| Class | 64980 |
| ObjectSomeValuesFrom | 17813 |
| Class | 64998 |
| ObjectSomeValuesFrom | 17818 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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2 changes: 1 addition & 1 deletion docs/metrics/ordo.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-13/ordo.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-18/ordo.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/reports/migrate.md
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| [GARD](./migrate_gard.md) | 9,370 |
| [DOID](./migrate_doid.md) | 34 |
| [NCIT](./migrate_ncit.md) | 2,209 |
| [OMIM](./migrate_omim.md) | 16 |
| [OMIM](./migrate_omim.md) | 15 |
| [ICD11FOUNDATION](./migrate_icd11foundation.md) | 12,409 |
| [ICD10WHO](./migrate_icd10who.md) | 119 |
| [ORDO](./migrate_ordo.md) | 10 |
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2 changes: 1 addition & 1 deletion docs/reports/migrate_doid.md
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| MONDO:0970973 | orofaciodigital syndrome xiv | DOID:0060958 | MONDO:equivalentTo | orofaciodigital syndrome XIV | | MONDO:0015375|MONDO:0006025 |
| MONDO:0970974 | orofaciodigital syndrome ii | DOID:0060959 | MONDO:equivalentTo | orofaciodigital syndrome II | | MONDO:0015375|MONDO:0006025 |
| MONDO:0970975 | orofaciodigital syndrome xix | DOID:0060960 | MONDO:equivalentTo | orofaciodigital syndrome XIX | | MONDO:0015375|MONDO:0006025 |
| MONDO:0970976 | orofaciodigital syndrome xviii | DOID:0060961 | MONDO:equivalentTo | orofaciodigital syndrome XVIII | | MONDO:0015375|MONDO:0006025 |
| MONDO:0970976 | orofaciodigital syndrome xviii | DOID:0060961 | MONDO:equivalentTo | orofaciodigital syndrome XVIII | | MONDO:0006025|MONDO:0015375 |
| MONDO:0970977 | orofaciodigital syndrome xx | DOID:0060962 | MONDO:equivalentTo | orofaciodigital syndrome XX | | MONDO:0015375|MONDO:0006025 |
| MONDO:0970978 | loeys-dietz syndrome 6 | DOID:0060964 | MONDO:equivalentTo | Loeys-Dietz syndrome 6 | | MONDO:0018954 |
| MONDO:0970979 | episodic ataxia type 9 | DOID:0060965 | MONDO:equivalentTo | episodic ataxia type 9 | | MONDO:0016227|MONDO:0000426 |
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37 changes: 18 additions & 19 deletions docs/reports/migrate_omim.md
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[Interactive FlatGithub table](https://flatgithub.com/monarch-initiative/mondo-ingest?filename=src/ontology/slurp/omim.tsv)

### Migratable terms
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:-----------------------------------------------|:---------------------|:---------------------------|:-----------------------------------------------|:--------------|:--------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0970943 | spermatogenic failure, x-linked, 8 | OMIM:301119 | MONDO:equivalentTo | spermatogenic failure, x-linked, 8 | | MONDO:0004983 |
| MONDO:0970944 | leigh syndrome, mitochondrial | OMIM:500017 | MONDO:equivalentTo | leigh syndrome, mitochondrial | | |
| MONDO:0970945 | developmental and epileptic encephalopathy 116 | OMIM:620806 | MONDO:equivalentTo | developmental and epileptic encephalopathy 116 | | MONDO:0100062 |
| MONDO:0970950 | rothmund-thomson syndrome, type 4 | OMIM:620819 | MONDO:equivalentTo | rothmund-thomson syndrome, type 4 | | MONDO:0010002 |
| MONDO:0970951 | el hayek-chahrour neurodevelopmental syndrome | OMIM:620820 | MONDO:equivalentTo | el hayek-chahrour neurodevelopmental syndrome | | |
| MONDO:0970952 | spermatogenic failure 91 | OMIM:620838 | MONDO:equivalentTo | spermatogenic failure 91 | | MONDO:0004983 |
| MONDO:0970953 | amyloidosis, hereditary systemic | OMIMPS:105210 | MONDO:equivalentTo | Amyloidosis, hereditary systemic | | |
| MONDO:0970954 | mhc class i deficiency | OMIMPS:604571 | MONDO:equivalentTo | MHC class I deficiency | | |
| MONDO:0970955 | neuroocular syndrome | OMIMPS:619539 | MONDO:equivalentTo | Neuroocular syndrome | | |
| MONDO:0970993 | immunodeficiency 119 | OMIM:620825 | MONDO:equivalentTo | immunodeficiency 119 | | MONDO:0021094 |
| MONDO:0970994 | immunodeficiency 120 | OMIM:620836 | MONDO:equivalentTo | immunodeficiency 120 | | MONDO:0021094 |
| MONDO:0970995 | premature ovarian failure 24 | OMIM:620840 | MONDO:equivalentTo | premature ovarian failure 24 | | MONDO:0019852 |
| MONDO:0970996 | mhc class ii deficiency | OMIMPS:209920 | MONDO:equivalentTo | MHC class II deficiency | | |
| MONDO:0970998 | auroneurodental syndrome | OMIM:620830 | MONDO:equivalentTo | auroneurodental syndrome | | |
| MONDO:0970999 | spermatogenic failure 92 | OMIM:620848 | MONDO:equivalentTo | spermatogenic failure 92 | | MONDO:0004983 |
| MONDO:0971000 | spermatogenic failure 93 | OMIM:620849 | MONDO:equivalentTo | spermatogenic failure 93 | | |
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:-------------------------------------------|:---------------------|:---------------------------|:-------------------------------------------|:--------------|:----------------------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0970998 | immunodeficiency 121 with autoinflammation | OMIM:620807 | MONDO:equivalentTo | immunodeficiency 121 with autoinflammation | | MONDO:0021094 |
| MONDO:0971002 | spermatogenic failure 94 | OMIM:620850 | MONDO:equivalentTo | spermatogenic failure 94 | | MONDO:0004983 |
| MONDO:0971004 | amyloidosis, hereditary systemic 1 | OMIM:105210 | MONDO:equivalentTo | amyloidosis, hereditary systemic 1 | | MONDO:0007100 |
| MONDO:0971005 | mhc class 2 deficiency 1 | OMIM:209920 | MONDO:equivalentTo | mhc class 2 deficiency 1 | | MONDO:0031520|MONDO:0008855 |
| MONDO:0971006 | mhc class 1 deficiency 1 | OMIM:604571 | MONDO:equivalentTo | mhc class 1 deficiency 1 | | MONDO:0011476 |
| MONDO:0971007 | neuroocular syndrome 1 | OMIM:619539 | MONDO:equivalentTo | neuroocular syndrome 1 | | MONDO:0859193 |
| MONDO:0971008 | amyloidosis, hereditary systemic 3 | OMIM:620657 | MONDO:equivalentTo | amyloidosis, hereditary systemic 3 | | MONDO:0007100 |
| MONDO:0971009 | amyloidosis, hereditary systemic 5 | OMIM:620658 | MONDO:equivalentTo | amyloidosis, hereditary systemic 5 | | MONDO:0007100 |
| MONDO:0971010 | amyloidosis, hereditary systemic 6 | OMIM:620659 | MONDO:equivalentTo | amyloidosis, hereditary systemic 6 | | MONDO:0007100 |
| MONDO:0971011 | mhc class 1 deficiency 2 | OMIM:620813 | MONDO:equivalentTo | mhc class 1 deficiency 2 | | MONDO:0011476 |
| MONDO:0971012 | mhc class 1 deficiency 3 | OMIM:620814 | MONDO:equivalentTo | mhc class 1 deficiency 3 | | MONDO:0011476 |
| MONDO:0971013 | mhc class 2 deficiency 2 | OMIM:620815 | MONDO:equivalentTo | mhc class 2 deficiency 2 | | MONDO:0008855 |
| MONDO:0971014 | mhc class 2 deficiency 3 | OMIM:620816 | MONDO:equivalentTo | mhc class 2 deficiency 3 | | MONDO:0008855 |
| MONDO:0971015 | mhc class 2 deficiency 4 | OMIM:620817 | MONDO:equivalentTo | mhc class 2 deficiency 4 | | MONDO:0008855 |
| MONDO:0971016 | mhc class 2 deficiency 5 | OMIM:620818 | MONDO:equivalentTo | mhc class 2 deficiency 5 | | MONDO:0008855 |
2 changes: 1 addition & 1 deletion docs/reports/unmapped.md
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| [GARD](./unmapped_gard.md) | 12,004 | 0 | 0 | 0 | 12,004 | 0 | 12,004 | 100.0% |
| [ORDO](./unmapped_ordo.md) | 15,402 | 6,212 | 1,391 | 1,165 | 9,190 | 9,127 | 63 | 0.7% |
| [DOID](./unmapped_doid.md) | 14,058 | 2,655 | 2,483 | 2,468 | 11,401 | 11,367 | 34 | 0.3% |
| [OMIM](./unmapped_omim.md) | 29,360 | 19,260 | 1,364 | 1,318 | 8,737 | 8,712 | 25 | 0.3% |
| [OMIM](./unmapped_omim.md) | 29,362 | 19,260 | 1,364 | 1,318 | 8,739 | 8,724 | 15 | 0.2% |

`Ontology`: Name of ontology
`Tot terms`: Total terms in ontology
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