diff --git a/Makefile b/Makefile index fc884e1..00510f2 100644 --- a/Makefile +++ b/Makefile @@ -43,7 +43,7 @@ stats/mondo_diff.txt: $(eval END := 2023-03-01) $(eval ID := mondo) make ontologies/$(ID)_$(START).obo ontologies/$(ID)_$(END).obo - #runoak -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo -o $@.yaml --statistics + runoak -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo --statistics -o $@.yaml robot diff --left ontologies/$(ID)_$(START).obo --right ontologies/$(ID)_$(END).obo -o $@ .PRECIOUS: stats/mondo_diff.txt @@ -53,7 +53,7 @@ stats/maxo_diff.txt: $(eval END := 2023-03-09) $(eval ID := maxo) make ontologies/$(ID)_$(START).obo ontologies/$(ID)_$(END).obo - #runoak -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo --statistics -o $@.yaml + runoak --stacktrace -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo --statistics -o $@.yaml robot diff --left ontologies/$(ID)_$(START).obo --right ontologies/$(ID)_$(END).obo -o $@ .PRECIOUS: stats/maxo_diff.txt @@ -63,7 +63,7 @@ stats/hp_diff.txt: $(eval END := 2023-01-27) $(eval ID := hp) make ontologies/$(ID)_$(START).obo ontologies/$(ID)_$(END).obo - #runoak -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo --statistics -o $@.yaml + runoak -i simpleobo:ontologies/$(ID)_$(START).obo diff -X simpleobo:ontologies/$(ID)_$(END).obo --statistics -o $@.yaml robot diff --left ontologies/$(ID)_$(START).obo --right ontologies/$(ID)_$(END).obo -o $@ .PRECIOUS: stats/hp_diff.txt @@ -74,5 +74,3 @@ stats/%_diff_summary.txt: stats/%_diff.txt grep -E "[+] AnnotationAssertion.*IAO_0000115" $< | wc -l >> $@ echo "New or updated synonyms: " >> $@ grep -E "[+] AnnotationAssertion.*Synonym" $< | wc -l >> $@ - -https://github.com/obophenotype/human-phenotype-ontology/releases/download/v2023-03-01/hp-base.obo diff --git a/stats/hp_diff.txt.yaml b/stats/hp_diff.txt.yaml new file mode 100644 index 0000000..ccbbcc5 --- /dev/null +++ b/stats/hp_diff.txt.yaml @@ -0,0 +1,12 @@ +__RESIDUAL__: + NewSynonym: 237 + NodeRename: 207 + EdgeDeletion: 210 + NodeMove: 164 + NodeDirectMerge: 39 + RemoveSynonym: 105 + NodeObsoletion: 1 + ClassCreation: 300 + NodeCreation: 1 + All_Obsoletion: 40 + All_Synonym: 342 diff --git a/stats/maxo_diff.txt.yaml b/stats/maxo_diff.txt.yaml new file mode 100644 index 0000000..6154f6d --- /dev/null +++ b/stats/maxo_diff.txt.yaml @@ -0,0 +1,11 @@ +__RESIDUAL__: + RemoveSynonym: 243 + NewSynonym: 226 + NodeRename: 53 + NodeMove: 232 + EdgeDeletion: 31 + NodeObsoletionWithDirectReplacement: 4 + NodeDeletion: 4 + ClassCreation: 198 + All_Obsoletion: 4 + All_Synonym: 469 diff --git a/stats/mondo_diff.txt.yaml b/stats/mondo_diff.txt.yaml new file mode 100644 index 0000000..211dc02 --- /dev/null +++ b/stats/mondo_diff.txt.yaml @@ -0,0 +1,15 @@ +__RESIDUAL__: + SynonymPredicateChange: 276 + EdgeDeletion: 8412 + NodeMove: 2366 + PredicateChange: 2080 + NodeObsoletionWithDirectReplacement: 39 + RemoveSynonym: 308 + NodeRename: 215 + NewSynonym: 350 + NodeDeletion: 1 + NodeObsoletion: 55 + NodeCreation: 4 + ClassCreation: 512 + All_Obsoletion: 94 + All_Synonym: 934