Notebooks illustrate various epidemiological processes using the summer2 platform.
To run these over Google Colab, follow the links below and the instructions in the first cell.
Age-specific infection fatality rate
To interact with the code from this repository on your local computer, you would need to undertake the following steps:
- Set up a conda environment
- Install summer with the command
pip install summerepi2 - Git clone the repository
- Install jupyter, or use an IDE with integrated notebook support like Visual Studio Code Please familiarise yourself with these tools before setting up your environment.
The notebooks listed above provide a brief introduction to participants in our 2023/2024 capacity building program.
Further resources are available through our main homepage. In particular, we draw your attention to:
- Full online documentation of the
summerplatform - Our textbook of infectious disease modelling using
summer