-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathportfolio.html
137 lines (118 loc) · 7.73 KB
/
portfolio.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="preconnect" href="https://fonts.googleapis.com">
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
<link href="https://fonts.googleapis.com/css2?family=Abril+Fatface?family=Roboto:wght@400;700&display=swap" rel="stylesheet">
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css">
<!-- <link rel="stylesheet" href="css/mytheme.css"> -->
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js"></script>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.5.0/css/font-awesome.min.css">
<link rel="stylesheet" type="text/css" href="./css/mine.css" />
<script src="https://kit.fontawesome.com/131191e809.js" crossorigin="anonymous"></script>
</head>
<body>
<div class="container-fluid">
<div class="row flex-nowrap">
<div class="col bg-nav min-vh-100" id="nav-placeholder">
</div>
<div class="col-9 min-vh-100">
<h1>My Portfolio</h1>
<div class="container">
<div class="row">
<div class="col-md-10" style="margin-top:10px">
<h2>Bioinformatics Projects</h2>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>DiNeR</h2>
<p>(<b>Di</b>fferential <b>Ne</b>twork Visualization in <b>R</b>) - a visualization library for <premph>R</premph> that facilitates insightful comparisons among multiple networks. </p>
<p>Available <a href="https://github.com/morganoneka/DiNeR">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>GCN Downstream</h2>
<p>A collection of scripts written in <premph>R</premph> that analyzes topological differences in genetic co-expression networks and more easily analyzes trends in downstream DAVID analysis. </p>
<p>Available <a href="https://github.com/morganoneka/GCNDownstream">here</a></p>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>ICG Downstream</h2>
<p>A collection of functions in <premph>R</premph> that assists in parsing and analyzing output from Giotto's Interaction Changed Genes functionality. </p>
<p>Available <a href="https://github.com/morganoneka/ICGDownstream">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>G Function Analysis</h2>
<p>A series of <premph>R</premph> scripts, stitched together using a convenient <premph>snakemake</premph> pipeline, that analyzes and visualizes cell pair interactions based on the G-Function curve frequently used in ecology. This robust code package is often used by myself and my labmates. </p>
<p>Available <a href="https://github.com/morganoneka/GFunctionAnalysis">here</a></p>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>Cell Interaction Graphs</h2>
<p>Representation of cell-interaction trends as graphs. Classification into diagnosis groups using <premph>StellarGraph</premph>. Clustering into regions using Deep Graph Infomax.</p>
<p>Graph classification code available <a href="https://github.com/morganoneka/CellGraphClassification">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>Spatial image analysis</h2>
<p>Used <premph>weakly-supervized learning</premph> to classify regions of interest in whole slide biological images using <a href="https://github.com/mahmoodlab/CLAM">CLAM</a>. Used features generated from <a href="https://kimialab.uwaterloo.ca/kimia/index.php/data-and-code-2/kimia-net/">KimiaNet</a> to predict spatial gene expression patterns using spatial random forest. Adapted both of these methods to work with images other than H&E slides. </p>
<p>H&E prediction code available <a href="https://github.com/morganoneka/HEtoST">here</a></p>
</div>
</div>
<div class="row">
<div class="col-md-10" style="margin-top:10px">
<h2>Personal Projects</h2>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>Music Complexity Analysis</h2>
<p>Has music actually gotten simpler over the years? I investigate this, and much more, in this project using data from <a href="ultimate-guitar.com/">Ultimate Guitar</a> and <a href="https://www.last.fm/">Last.FM</a>. Web scraping with <premph>Beautiful Soup</premph> and interactive visualization using <premph>APEX charts</premph>.</p>
<p>Available <a href="https://morganoneka.github.io/MusicalComplexityAnalysis/">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>Music Practice</h2>
<p>Visualization of my practice history with the goal of identifying trends and making it easier to set & achieve my practice goals. Implemented using <premph>d3.js</premph> and <premph>plotly.js</premph>.</p>
<p>Available <a href="https://morganoneka.github.io/MusicPractice/">here</a></p>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>US Surnames</h2>
<p>A basic web page which uses <premph>d3.js</premph> to more easily visualize, filter, and search US Census data on surname usage.</p>
<p>Available <a href="https://morganoneka.github.io/names/">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>Reddit + MBTI</h2>
<p>Does Reddit usage differ across personality types as defined by Myer Briggs Type Indicator? Using Kaggle data plus Subreddit classification info I scraped from <a href="https://www.findareddit.com/">Find A Reddit</a>, I investigate this.</p>
<p>Web scraping process available <a href="https://github.com/morganoneka/SubredditInfoScraping">here</a>. Analysis coming soon to Kaggle.</p>
</div>
</div>
<div class="row">
<div class="col-md-5 proj-profile mr-2 mb-2">
<h2>Song Lyric Generation</h2>
<p>Interface with Spotify API "Spotipy", web scraping from Genius, and a simple word-prediction dictionary to generate song lyrics based on songs within a provided playlist.</p>
<p>Available <a href="https://github.com/morganoneka/LyricsGenerator">here</a></p>
</div>
<div class="col-md-5 proj-profile mb-2">
<h2>Haircare Product Usage</h2>
<p>There are many brands and products out there geared toward textured (wavy, curly, and coily) hair, but which ones are preferred by which hair type — and which ones conquer common concerns like frizz, protein/moisture balance, and de-tangling? Using data obtained from relevant subreddits and Amazon product reviews, I compile a report of brands and products best based on these concerns.</p>
<p>Available <a href="https://github.com/morganoneka/haircare">here</a></p>
</div>
</div>
</div>
</div>
</div>
</div>
<script>
$(function(){
$("#nav-placeholder").load("nav.html");
});
</script>
</body>
</html>