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69 Open 143 Closed
69 Open 143 Closed
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Issues list

Strange arrows after gene KO
#221 opened Nov 7, 2024 by lh12565
ma.SUPPORTED_REF_GENOME for new chicken genome: GRCg7b
#220 opened Nov 3, 2024 by YuJiandongBio
Retrieving the multi dimensional gene expression shift vector
#219 opened Oct 23, 2024 by CBannink
network_analysis.linkList_to_networkgraph() Creates wrong directed edges
#218 opened Oct 16, 2024 by osmanmerdan
What the the difference between fit_GRN_for_simulation, fit_GRN_for_network_analysis?
#217 opened Oct 15, 2024 by swapnilkeshari
Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
#216 opened Sep 29, 2024 by zjprookie
1
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif'
#214 opened Aug 31, 2024 by chuyaowang
2
(Best practices) Is adding TF-target gene pairs manually required if I have generated the base_GRN from snATAC seq?
#213 opened Aug 31, 2024 by yojetsharma
'ColormapRegistry' object has no attribute 'get_cmap'
#211 opened Aug 27, 2024 by imraanGit
How to proceed if we don't have enough information to manually make a TF-target gene pair data?
#210 opened Aug 27, 2024 by yojetsharma
Producing a video visualisation (like shown on https://celloracle.org/)
#209 opened Aug 9, 2024 by jdarmitage
seuratToAnndata
#208 opened Jul 21, 2024 by nhu-github
1
The Kernel crashed when I run tfi.scan
#207 opened Jul 12, 2024 by Zhangruiqi111
1
does not have enough regulatory connection in the GRNs. Cannot perform simulation.
#205 opened Jul 6, 2024 by xiaomaolxc
Does celloracle need pseudotime information to give cluster wise GRNs?
#204 opened Jul 2, 2024 by ruchikabhat
GimmeMotifs installed but can't install celloracle because of 'Failed building wheel for gimmemotifs'
#202 opened May 25, 2024 by jianwu1
1
We don't have default motifs for your species, Please specify motif data by yourself.
#200 opened May 17, 2024 by Roger-GOAT
1
Loading CellOracle takes too much time
#199 opened May 10, 2024 by CYWu111
Heterogeneous dataset subsetting and number of cells/cluster
#197 opened May 8, 2024 by acv21
model overfitting
#195 opened Apr 27, 2024 by tkisss
Request for 3D UMAP
#194 opened Apr 8, 2024 by fafa92
Problem when using a custom genomes_dir for TF scan
#193 opened Apr 3, 2024 by VictorCurean
2
Plot cell types under 'development' flow grid
#192 opened Mar 28, 2024 by alexandrelanau
tfinfo and GRN files
#191 opened Mar 27, 2024 by momur
4
Request for Schistosoma japonicum genome
#189 opened Mar 25, 2024 by shycheng
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