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Plugin_Template Matching List Image

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Laurent Thomas edited this page Apr 26, 2019 · 2 revisions
Form

For this plugin, a list of templates and a list of images (single plane, not stacks) can be provided as input files (i.e. they do not need to be open before the macro is run).
For each image, each template will be searched and the best match among them will be returned.

NOTE:

  • If Open Images is ticked, the images in the list must have the same dimensions and will be opened as a stack
  • This plugin is not macro-recordable (the list file input is not yet compatible).

Search region

An optional rectangular search region can also be provided as a *.roi file to limit the search to a fraction of the images.

ROIs can be saved from the RoiManager :

  • Open one of the images of the image series
  • Draw the search region as a rectangular ROI and add it to the RoiManager (Press t)
  • Save it locally as a roi file. (RoiManager>More>Save...). See wiki section Save and Open regions of interest
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