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Add slice-time correction to preprocessing #107

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mwaskom opened this issue Aug 14, 2017 · 1 comment
Open

Add slice-time correction to preprocessing #107

mwaskom opened this issue Aug 14, 2017 · 1 comment

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@mwaskom
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mwaskom commented Aug 14, 2017

This should be added while remaining optional. A few thoughts:

  • Probably easier to do in Python with spline interpolation than calling out to FSL.
  • Need to determine the best way to specify slice times
  • Should it be it's own node or should it be wrapped into the FinalizeTimeSeries interface to minimize loading/saving of the time series?
@mwaskom
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mwaskom commented Sep 19, 2017

See http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0182939

What probably make sense is to do slice time correction in the first step of the preprocesing workflow, then write out the individual volumes of the slice-time corrected data (for later resampling) and the full time series of the uncorrected data (used to estimate motion but not later resampled).

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