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navinlabcode / HumanBreastCellAtlas Public

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HumanBreastCellAtlas

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cellranger_script_single_cell_example.sh

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6 lines (6 loc) · 320 Bytes

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HumanBreastCellAtlas

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cellranger_script_single_cell_example.sh

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6 lines (6 loc) · 320 Bytes

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/volumes/seq/code/3rd_party/cellranger/cellranger-3.1.0/cellranger count --id sample_id \

--fastqs /volumes/seq/projects/HBCA/HBCA_10x_RNA/fastq_output/sample_id \

--sample sample_id \

--transcriptome /volumes/seq/code/3rd_party/10X/refdata-cellranger-GRCh38-3.0.0

--localcores=20 \

--localmem=300

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