From 4981167766c2d59096cd540acace28c34d24020f Mon Sep 17 00:00:00 2001 From: Alex Skrenchuk Date: Fri, 26 Jan 2024 11:48:05 -0800 Subject: [PATCH] update class name; add new umls submissions to the queue by default 1. change class name to work with changes introduced in ontologies_api/issues/127 2. BioPortal backend is migrated from 4store to AllegroGraph so new umls submissions can be added without having to rebuild the whole 4store KB --- bin/create_umls_submissions.rb | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/bin/create_umls_submissions.rb b/bin/create_umls_submissions.rb index bf450b8c..c7df96e7 100755 --- a/bin/create_umls_submissions.rb +++ b/bin/create_umls_submissions.rb @@ -24,8 +24,9 @@ umls_files = Dir.glob(File.join(umls_files_path, "*.ttl")) # UMLS Release Details. Update this for new release -new_version = "2018AB" -new_released = "2018-11-05" #Release date +new_version = "2023AB" +# Release date in YYYY-MM-DD format +new_released = "2023-11-06" file_index = {} umls_files.each do |x| @@ -64,11 +65,11 @@ end end puts "#{new_submissions.length} new files mapped to ontologies" -pull = NcboCron::Models::OntologyPull.new +pull = NcboCron::Helpers::OntologyHelper new_submissions.each_key do |acr| ont, sub, file = new_submissions[acr] filename = file.split("/")[-1] pull.create_submission(ont,sub,file,filename,logger=nil, - add_to_pull=false,new_version,new_released) + add_to_pull=true,new_version,new_released) puts "Created new submission for #{acr}" end