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test_output.sam
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test_output.sam
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@HD VN:1.0 SO:unsorted
@PG ID:GSNAP PN:gsnap VN:2017-10-12 CL:gsnap.avx2 --gunzip -t 26 -A sam -m 5 -d mm10_chroms -D /projects/bgmp/coonrod/mmu/INTEL -s /projects/bgmp/coonrod/mmu/INTEL/mm10_chroms/mm10_chroms.maps/Mus_musculus.GRCm38.89.splicesites.iit --split-output=/projects/bgmp/coonrod/deduper/gsnap//Datset1 /projects/bgmp/coonrod/deduper//Dataset1.fastq_dups.gz
@SQ SN:1 LN:195471971
@SQ SN:2 LN:182113224
@SQ SN:3 LN:160039680
@SQ SN:4 LN:156508116
@SQ SN:5 LN:151834684
@SQ SN:6 LN:149736546
@SQ SN:7 LN:145441459
@SQ SN:8 LN:129401213
@SQ SN:9 LN:124595110
@SQ SN:10 LN:130694993
@SQ SN:11 LN:122082543
@SQ SN:12 LN:120129022
@SQ SN:13 LN:120421639
@SQ SN:14 LN:124902244
@SQ SN:15 LN:104043685
@SQ SN:16 LN:98207768
@SQ SN:17 LN:94987271
@SQ SN:18 LN:90702639
@SQ SN:19 LN:61431566
@SQ SN:X LN:171031299
@SQ SN:Y LN:91744698
@SQ SN:MT LN:16299
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAC 0 2 76814284 36 71M * 0 0 TCCACCACAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAA 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAC 0 2 76814284 36 1S70M * 0 0 TCCACCACAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAA 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAC 0 3 76814284 36 71M * 0 0 TCCACCACAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAA 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAC 0 2 47011284 36 71M * 0 0 TCCACCACAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAA 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAC 0 2 76814284 36 71M * 0 0 ATGGCGTAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAAT 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:24260:1121:CTGTTCAA 0 2 76814284 36 71M * 0 0 TCCACCACAATCTTACCATCCTTCCTCCAGACCACATCGCGTTCTTTGTTCAACTCACAGCTCAAGTACAA 6AEEEEEEAEEAEEEEAAEEEEEEEEEAEEAEEAAEE<EEEEEEEEEAEEEEEEEAAEEAAAEAEEAEAE/ MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:18996:1145:TTCGCCTA 0 2 130171653 36 40M1I30M * 0 0 GTCTCTTAGTTTATTATAAACCAGCTTCATAGGCCACAGAGGAAAAAGGACTATATACATACAGCCTTTTG 6AEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEE MD:Z:53G16 NH:i:1 HI:i:1 NM:i:2 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:25533:1187:GTTCACCT 0 2 76743835 36 71M * 0 0 CTTGGTAACTTTCAGAGAATTAGTCACAACTTCTGAAGCAACCACAGTCCATGCAAGTCGACTGGTTTCTC 6AEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEAEEEEEEE<EEEEEEEEEEEEEEEEEEEE MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:6251:1098:ATCCATGG 0 2 76765947 36 71M * 0 0 GGCGTTCCAAACCACGGTCATCTCTTCTTTGCTTACTTTAGTGACTTCTGGAGGATCAGGGCGGCCAGGTC /<EEAEEEEEEEEAEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:11995:1145:AGCTACCA 0 2 76710746 36 71M * 0 0 TGCATAACTCGTGCTGGTTTCCTCCTTTGTGGGGACGTGATAGGTCGAGTACCTGAAGTCTCTTCTTCTGT 6<EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU
NS500451:154:HWKTMBGXX:1:11101:20566:1080:TATAGNGC 0 2 119767599 36 71M * 0 0 CCCCAAACAAGTGGTCCCCAAAAGAGACAGCCTCAAAATGGTCTAAGAAGCTGGCATAAAGGTCAGGAAAA 6AEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEAEEEEEEEEEEEEEEEEE MD:Z:71 NH:i:1 HI:i:1 NM:i:0 SM:i:36 XQ:i:40 X2:i:0 XO:Z:UU