From 5263466d24076bc41e9c8c83a980432ef7527c68 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Fri, 27 Oct 2023 13:13:14 +0300
Subject: [PATCH 01/24] Wheels for arch64

---
 .github/workflows/release.yml    | 1 +
 .github/workflows/test_build.yml | 1 +
 2 files changed, 2 insertions(+)

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index dba7f648..6c539523 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -58,6 +58,7 @@ jobs:
           python -m pip install --upgrade pip
           python -m cibuildwheel --output-dir wheelhouse
         env:
+          CIBW_ARCHS_MACOS: "x86_64 arm64"
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
           CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-* cp311-*
diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index 2742c1e8..6955193b 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -32,6 +32,7 @@ jobs:
           python -m pip install --upgrade pip
           python -m cibuildwheel --output-dir wheelhouse
         env:
+          CIBW_ARCHS_MACOS: "x86_64 arm64"
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
           CIBW_BUILD: cp39-* cp36-*

From 49746d2f5cd315e748b89a9aab069e37a8b9962f Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Fri, 27 Oct 2023 13:14:21 +0300
Subject: [PATCH 02/24] version

---
 imops/__version__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/imops/__version__.py b/imops/__version__.py
index 21320a81..73f83151 100644
--- a/imops/__version__.py
+++ b/imops/__version__.py
@@ -1 +1 @@
-__version__ = '0.8.4'
+__version__ = '0.8.5'

From cb2204bc5d05bc39d705ad8edc4acacffe1ad738 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Thu, 9 Nov 2023 23:48:35 +0300
Subject: [PATCH 03/24] Bump `cibuildwheel`

---
 .github/workflows/test_build.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index 6955193b..3f1ecea4 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -18,7 +18,7 @@ jobs:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v3
       - name: Install cibuildwheel
-        run: python -m pip install cibuildwheel==2.10.0
+        run: python -m pip install cibuildwheel==2.16.2
       - name: Install gcc for mac
         if: matrix.os == 'macOS-11'
         run: |

From 869e3a591681839737c79720ab0ee22e056d2270 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Mon, 27 Nov 2023 12:35:48 +0300
Subject: [PATCH 04/24] stacklevel

---
 imops/zoom.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/imops/zoom.py b/imops/zoom.py
index 2752afd6..455966a2 100644
--- a/imops/zoom.py
+++ b/imops/zoom.py
@@ -238,6 +238,7 @@ def _zoom(
         warn(
             'Fast zoom is only supported for ndim<=4, dtype=fp32 or fp64 (and bool-int16-32-64 if order == 0), '
             "output=None, order=0 or 1, mode='constant', grid_mode=False. Falling back to scipy's implementation.",
+            stacklevel=3,
         )
         return scipy_zoom(
             input, zoom, output=output, order=order, mode=mode, cval=cval, prefilter=prefilter, grid_mode=grid_mode
@@ -276,7 +277,7 @@ def _zoom(
                 *args,
             )
         else:
-            warn("Input array can't be represented as C-contiguous, performance can drop a lot.")
+            warn("Input array can't be represented as C-contiguous, performance can drop a lot.", stacklevel=3)
             out = src_zoom(input, zoom, cval, *args)
     else:
         out = src_zoom(input, zoom, cval, *args)

From 5492cc40437bd27c8493766e341ad1b22550bebd Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 19 Dec 2023 19:48:47 +0300
Subject: [PATCH 05/24] setuptools

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 03753a93..67a4801b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,5 +1,5 @@
 [build-system]
-requires = ['setuptools', 'numpy<2.0.0', 'Cython<3.0.0']
+requires = ['setuptools<69.0.0', 'numpy<2.0.0', 'Cython<3.0.0']
 build-backend = 'setuptools.build_meta'
 
 [project]

From 97da28f0a3e52dd6268bf8ab46e4ddcf2136c7fb Mon Sep 17 00:00:00 2001
From: Anihilatorgunn <n.ushakov@ira-labs.com>
Date: Fri, 29 Mar 2024 20:14:51 +0300
Subject: [PATCH 06/24] faster

---
 imops/interp1d.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/imops/interp1d.py b/imops/interp1d.py
index e010cd4b..334434fe 100644
--- a/imops/interp1d.py
+++ b/imops/interp1d.py
@@ -2,6 +2,7 @@
 from warnings import warn
 
 import numpy as np
+import torch
 from scipy.interpolate import interp1d as scipy_interp1d
 
 from .backend import BackendLike, resolve_backend
@@ -180,14 +181,14 @@ def __call__(self, x_new: np.ndarray) -> np.ndarray:
         if self.backend.name == 'Numba':
             set_num_threads(old_num_threads)
 
-        out = out.astype(max(self.y.dtype, self.x.dtype, x_new.dtype, key=lambda x: x.type(0).itemsize), copy=False)
+        out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
 
         if self.n_dummy:
             out = out[(0,) * self.n_dummy]
         if self.axis not in (-1, out.ndim - 1):
             out = np.swapaxes(out, -1, self.axis)
         # FIXME: fix behaviour with np.inf-s
-        if np.isnan(out).any():
+        if torch.isnan(torch.from_numpy(out)).any():
             if not np.isinf(out).any():
                 raise RuntimeError("Can't decide how to handle nans in the output.")
 

From 8d794247a645eee8d04c2130ea9244a7c112cf78 Mon Sep 17 00:00:00 2001
From: Anihilatorgunn <n.ushakov@ira-labs.com>
Date: Fri, 29 Mar 2024 20:20:37 +0300
Subject: [PATCH 07/24] fix

---
 imops/interp1d.py | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/imops/interp1d.py b/imops/interp1d.py
index 334434fe..878e25c0 100644
--- a/imops/interp1d.py
+++ b/imops/interp1d.py
@@ -2,7 +2,6 @@
 from warnings import warn
 
 import numpy as np
-import torch
 from scipy.interpolate import interp1d as scipy_interp1d
 
 from .backend import BackendLike, resolve_backend
@@ -138,7 +137,9 @@ def __init__(
                 njit_kwargs = {kwarg: getattr(backend, kwarg) for kwarg in backend.__dataclass_fields__.keys()}
                 self.src_interp1d = njit(**njit_kwargs)(numba_interp1d)
 
-    def __call__(self, x_new: np.ndarray) -> np.ndarray:
+    def __call__(self, x_new: np.ndarray, use_torch: bool = False) -> np.ndarray:
+        if use_torch:
+            import torch
         """
         Evaluate the interpolant
 
@@ -181,14 +182,21 @@ def __call__(self, x_new: np.ndarray) -> np.ndarray:
         if self.backend.name == 'Numba':
             set_num_threads(old_num_threads)
 
-        out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
+        if use_torch:
+            out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
+        else:
+            out = out.astype(max(self.y.dtype, self.x.dtype, x_new.dtype, key=lambda x: x.type(0).itemsize), copy=False)
 
         if self.n_dummy:
             out = out[(0,) * self.n_dummy]
         if self.axis not in (-1, out.ndim - 1):
             out = np.swapaxes(out, -1, self.axis)
         # FIXME: fix behaviour with np.inf-s
-        if torch.isnan(torch.from_numpy(out)).any():
+        if use_torch:
+            have_nan = torch.isnan(torch.from_numpy(out)).any()
+        else:
+            have_nan = np.isnan(out).any()
+        if have_nan:
             if not np.isinf(out).any():
                 raise RuntimeError("Can't decide how to handle nans in the output.")
 

From 8965b96b8c5221865d382b6febd6dac316f53cdf Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Mon, 1 Apr 2024 19:21:24 +0300
Subject: [PATCH 08/24] Support uint16-32

---
 imops/src/_zoom.pyx |  2 ++
 imops/zoom.py       | 13 +++++++------
 tests/test_zoom.py  |  2 +-
 3 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/imops/src/_zoom.pyx b/imops/src/_zoom.pyx
index 44b4d078..9aabbc81 100644
--- a/imops/src/_zoom.pyx
+++ b/imops/src/_zoom.pyx
@@ -18,6 +18,8 @@ from libc.math cimport floor, sqrt
 ctypedef cython.floating FLOAT
 ctypedef fused NUM:
     np.uint8_t
+    np.uint16_t
+    np.uint32_t
     short
     int
     long long
diff --git a/imops/zoom.py b/imops/zoom.py
index 455966a2..6d1868ff 100644
--- a/imops/zoom.py
+++ b/imops/zoom.py
@@ -81,7 +81,7 @@ def zoom(
     """
     Rescale `x` according to `scale_factor` along the `axis`.
 
-    Uses a fast parallelizable implementation for fp32 / fp64 (and bool-int16-32-64 if order == 0) inputs,
+    Uses a fast parallelizable implementation for fp32-fp64 and bool-int16-32-64-uint8-16-32 if order == 0 inputs,
     ndim <= 4 and order = 0 or 1.
 
     Parameters
@@ -136,7 +136,7 @@ def zoom_to_shape(
     """
     Rescale `x` to match `shape` along the `axis`.
 
-    Uses a fast parallelizable implementation for fp32 / fp64 (and bool-int16-32-64 if order == 0) inputs,
+    Uses a fast parallelizable implementation for fp32-fp64 and bool-int16-32-64-uint8-16-32 if order == 0 inputs,
     ndim <= 4 and order = 0 or 1.
 
     Parameters
@@ -198,7 +198,7 @@ def _zoom(
     backend: BackendLike = None,
 ) -> np.ndarray:
     """
-    Faster parallelizable version of `scipy.ndimage.zoom` for fp32 / fp64 (and bool-int16-32-64 if order == 0) inputs.
+    Faster parallelizable version of `scipy.ndimage.zoom` for fp32-fp64 and bool-int16-32-64-uint8-16-32 if order == 0
 
     Works faster only for ndim <= 4. Shares interface with `scipy.ndimage.zoom`
     except for
@@ -228,7 +228,8 @@ def _zoom(
         or (
             dtype not in (np.float32, np.float64)
             if order == 1
-            else dtype not in (bool, np.float32, np.float64, np.int16, np.int32, np.int64)
+            else dtype
+            not in (bool, np.float32, np.float64, np.int16, np.int32, np.int64, np.uint8, np.uint16, np.uint32)
         )
         or ndim > 4
         or output is not None
@@ -236,8 +237,8 @@ def _zoom(
         or grid_mode
     ):
         warn(
-            'Fast zoom is only supported for ndim<=4, dtype=fp32 or fp64 (and bool-int16-32-64 if order == 0), '
-            "output=None, order=0 or 1, mode='constant', grid_mode=False. Falling back to scipy's implementation.",
+            'Fast zoom is only supported for ndim<=4, dtype=fp32-fp64 and bool-int16-32-64-uint8-16-32 if order == 0, '
+            "output=None, order=0 or 1 , mode='constant', grid_mode=False. Falling back to scipy's implementation.",
             stacklevel=3,
         )
         return scipy_zoom(
diff --git a/tests/test_zoom.py b/tests/test_zoom.py
index 88e9d6eb..353bcd40 100644
--- a/tests/test_zoom.py
+++ b/tests/test_zoom.py
@@ -39,7 +39,7 @@ def order(request):
     return request.param
 
 
-@pytest.fixture(params=[np.float32, np.float64, bool, np.int16, np.int32, np.int64])
+@pytest.fixture(params=[np.float32, np.float64, bool, np.int16, np.int32, np.int64, np.uint8, np.uint16, np.uint32])
 def dtype(request):
     return request.param
 

From c5a7bd7c1b046c4facbb3406372925debe89d733 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Mon, 1 Apr 2024 19:24:18 +0300
Subject: [PATCH 09/24] update readme

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index cf8c8143..9f9c8b5f 100644
--- a/README.md
+++ b/README.md
@@ -53,7 +53,7 @@ y = zoom(x, 2, axis=[0, 1])
 # without the need to compute the scale factor
 z = zoom_to_shape(x, (4, 120, 67))
 ```
-Works faster only for `ndim<=4, dtype=float32 or float64 (and bool-int16-32-64 if order == 0), output=None, order=0 or 1, mode='constant', grid_mode=False`
+Works faster only for `ndim<=4, dtype=float32 or float64 (and bool-int16-32-64-uint8-16-32 if order == 0), output=None, order=0 or 1, mode='constant', grid_mode=False`
 ### Fast 1d linear interpolation
 
 ```python

From 058acec33d0668d37c127e3b65fce7c0348c1a1c Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Mon, 1 Apr 2024 19:25:23 +0300
Subject: [PATCH 10/24] version

---
 imops/__version__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/imops/__version__.py b/imops/__version__.py
index 73f83151..8843c51c 100644
--- a/imops/__version__.py
+++ b/imops/__version__.py
@@ -1 +1 @@
-__version__ = '0.8.5'
+__version__ = '0.8.7'

From 9a19949e4089f042b02dd07647846680340e6231 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Mon, 1 Apr 2024 20:32:02 +0300
Subject: [PATCH 11/24] Avoid cropping to float shape/box

---
 imops/crop.py      |  7 +++++++
 tests/test_crop.py | 16 +++++++++++++++-
 tests/test_pad.py  |  3 +++
 3 files changed, 25 insertions(+), 1 deletion(-)

diff --git a/imops/crop.py b/imops/crop.py
index 2476305e..5c210774 100644
--- a/imops/crop.py
+++ b/imops/crop.py
@@ -35,6 +35,9 @@ def crop_to_shape(x: np.ndarray, shape: AxesLike, axis: AxesLike = None, ratio:
     >>> cropped = crop_to_shape(x, [3, 4, 5])  # fail due to bigger resulting shape
     """
     x = np.asarray(x)
+    shape = np.asarray(shape)
+    if not np.issubdtype(shape.dtype, np.integer):
+        raise ValueError(f'`shape` must be of integer dtype, got {shape.dtype}')
     axis, shape, ratio = broadcast_axis(axis, x.ndim, shape, ratio)
 
     old_shape, new_shape = np.array(x.shape), np.array(fill_by_indices(x.shape, shape, axis))
@@ -89,6 +92,10 @@ def crop_to_box(
     >>> cropped = crop_to_box(x, np.array([[0], [5]]), axis=0, padding_values=0)  # pad with 0-s to shape [5, 3, 4]
     """
     x = np.asarray(x)
+    box = np.asarray(box)
+    if not np.issubdtype(box.dtype, np.integer):
+        raise ValueError(f'`box` must be of integer dtype, got {box.dtype}')
+
     start, stop = box
     axis, start, stop = broadcast_axis(axis, x.ndim, start, stop)
 
diff --git a/tests/test_crop.py b/tests/test_crop.py
index 8d9e569f..3be805b0 100644
--- a/tests/test_crop.py
+++ b/tests/test_crop.py
@@ -52,7 +52,21 @@ def test_raises():
 @seeded_by(SEED)
 def test_crop_to_shape():
     x = np.random.rand(3, 10, 10)
-    shape = 3, 4, 8
+    shape = (3, 4, 8)
     assert crop_to_shape(x, shape).shape == shape
     with pytest.raises(ValueError):
         crop_to_shape(x, (3, 15, 10))
+
+
+def test_crop_to_float_shape():
+    x = np.random.rand(3, 10, 10)
+    float_shape = (1.337, 3.1415, 2.7182)
+    with pytest.raises(ValueError):
+        crop_to_shape(x, float_shape)
+
+
+def test_crop_to_float_box():
+    x = np.random.rand(3, 10, 10)
+    float_box = [[0, 1], [4, 4.5], [3.1, 9]]
+    with pytest.raises(ValueError):
+        crop_to_box(x, float_box)
diff --git a/tests/test_pad.py b/tests/test_pad.py
index 664db814..19fa3a0a 100644
--- a/tests/test_pad.py
+++ b/tests/test_pad.py
@@ -140,6 +140,9 @@ def test_restore_crop_invalid_box():
     with pytest.raises(ValueError):
         restore_crop(x, np.array([[0, 0, 0], [1, 1, 1]]), [4, 4, 4])
 
+    with pytest.raises(ValueError):
+        restore_crop(x, np.array([[0.5, 0.5, 0.5], [1.5, 1.5, 1.5]]), [4.5, 4.5, 4.5])
+
 
 def test_pad_to_divisible():
     x = np.zeros((4, 8, 12))

From fb56fade65f4a2104f7293e137fe3e4e8b574bd3 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 12:06:36 +0300
Subject: [PATCH 12/24] style;

---
 imops/interp1d.py | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/imops/interp1d.py b/imops/interp1d.py
index 878e25c0..d499b6a5 100644
--- a/imops/interp1d.py
+++ b/imops/interp1d.py
@@ -183,7 +183,18 @@ def __call__(self, x_new: np.ndarray, use_torch: bool = False) -> np.ndarray:
             set_num_threads(old_num_threads)
 
         if use_torch:
-            out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
+            out = (
+                torch.from_numpy(out)
+                .to(
+                    max(
+                        torch.from_numpy(self.y).dtype,
+                        torch.from_numpy(self.x).dtype,
+                        torch.from_numpy(x_new).dtype,
+                        key=lambda x: x.itemsize,
+                    )
+                )
+                .numpy()
+            )
         else:
             out = out.astype(max(self.y.dtype, self.x.dtype, x_new.dtype, key=lambda x: x.type(0).itemsize), copy=False)
 

From 644725b486fafac52517903e1e5deafe38d675ba Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 12:14:09 +0300
Subject: [PATCH 13/24] update `setup-python`

---
 .github/workflows/docs.yml       | 2 +-
 .github/workflows/release.yml    | 8 ++++----
 .github/workflows/test_build.yml | 7 ++++---
 .github/workflows/tests.yml      | 2 +-
 4 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 766d566d..cdbe60be 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -14,7 +14,7 @@ jobs:
       - uses: actions/checkout@v3
       - uses: fregante/setup-git-user@v1
       - run: git fetch origin gh-pages --depth=1
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: '3.10'
       - name: Install
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index f42ab66a..745ce647 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -14,7 +14,7 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: 3.9
 
@@ -42,9 +42,9 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
       - name: Install cibuildwheel
-        run: python -m pip install cibuildwheel==2.10.0
+        run: python -m pip install cibuildwheel==2.17.0
       - name: Install gcc for mac
         if: matrix.os == 'macOS-11'
         run: |
@@ -91,7 +91,7 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
       - name: Build
         run: python setup.py sdist
       - uses: actions/upload-artifact@v3
diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index 824bdca5..31631a47 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -16,9 +16,11 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.9' 
       - name: Install cibuildwheel
-        run: python -m pip install cibuildwheel==2.16.2
+        run: python -m pip install cibuildwheel==2.17.0
       - name: Install gcc for mac
         if: matrix.os == 'macOS-11'
         run: |
@@ -50,7 +52,6 @@ jobs:
           python -m pip install --upgrade pip
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_ARCHS_MACOS: "x86_64 arm64"
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
           CIBW_BUILD: cp39-* cp36-*
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 513995f8..7e674650 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -15,7 +15,7 @@ jobs:
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 

From 086a18be63594e556f45ece02e2d58e0b67b728e Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 12:16:26 +0300
Subject: [PATCH 14/24] Support py312

---
 .github/workflows/release.yml    | 2 +-
 .github/workflows/test_build.yml | 2 +-
 .github/workflows/tests.yml      | 2 +-
 pyproject.toml                   | 1 +
 setup.py                         | 1 +
 5 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 745ce647..3db0141c 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -79,7 +79,7 @@ jobs:
           CIBW_ARCHS_MACOS: "x86_64 arm64"
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
-          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-* cp311-*
+          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-* cp311-* cp312-*
           CIBW_BEFORE_BUILD_LINUX: 'if [ $(python -c "import sys; print(sys.version_info[1])") -ge 9 ]; then python -m pip install "numpy<2.0.0" --config-settings=setup-args="-Dallow-noblas=true"; fi'
       - uses: actions/upload-artifact@v3
         with:
diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index 31631a47..ffcc456e 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -54,6 +54,6 @@ jobs:
         env:
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
-          CIBW_BUILD: cp39-* cp36-*
+          CIBW_BUILD: cp39-* cp36-* cp312-*
           CIBW_SKIP: "*musllinux* *manylinux_x86_64"
           CIBW_BEFORE_BUILD_LINUX: 'if [ $(python -c "import sys; print(sys.version_info[1])") -ge 9 ]; then python -m pip install "numpy<2.0.0" --config-settings=setup-args="-Dallow-noblas=true"; fi'
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 7e674650..2a192669 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-20.04
     strategy:
       matrix:
-        python-version: [ '3.6', '3.7', '3.8', '3.9', '3.10', '3.11']
+        python-version: [ '3.6', '3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
 
     steps:
       - uses: actions/checkout@v3
diff --git a/pyproject.toml b/pyproject.toml
index 2ee62668..4ca5df98 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,6 +25,7 @@ classifiers = [
     'Programming Language :: Python :: 3.9',
     'Programming Language :: Python :: 3.10',
     'Programming Language :: Python :: 3.11',
+    'Programming Language :: Python :: 3.12',
 ]
 
 [options]
diff --git a/setup.py b/setup.py
index d20d0f10..f255b459 100644
--- a/setup.py
+++ b/setup.py
@@ -15,6 +15,7 @@
     'Programming Language :: Python :: 3.9',
     'Programming Language :: Python :: 3.10',
     'Programming Language :: Python :: 3.11',
+    'Programming Language :: Python :: 3.12',
 ]
 
 with open(root / 'requirements.txt', encoding='utf-8') as file:

From 367b89856b6398f6d1526ee734527a5f2d61ccc7 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 12:27:11 +0300
Subject: [PATCH 15/24] sdist

---
 .github/workflows/release.yml | 2 +-
 .github/workflows/tests.yml   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 3db0141c..e0608812 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -93,7 +93,7 @@ jobs:
       - name: Set up Python 3.9
         uses: actions/setup-python@v5
       - name: Build
-        run: python setup.py sdist
+        run: python -m build --sdist
       - uses: actions/upload-artifact@v3
         with:
           path: dist/*.tar.gz
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 2a192669..934a7543 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -28,7 +28,7 @@ jobs:
           if [ "$GITHUB_BASE_REF" = "master" ] && [ "$MATCH" != "" ]; then exit 1; fi
       - name: Build the package
         run: |
-          python setup.py sdist
+          python -m build --sdist
 
       - name: Install
         run: |

From 8385faf97e44d68220a664c56eb26046dc2909e2 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 12:30:41 +0300
Subject: [PATCH 16/24] Fix

---
 .github/workflows/release.yml | 4 +++-
 .github/workflows/tests.yml   | 1 +
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index e0608812..4b2c6a7c 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -93,7 +93,9 @@ jobs:
       - name: Set up Python 3.9
         uses: actions/setup-python@v5
       - name: Build
-        run: python -m build --sdist
+        run: |
+          pip install build
+          python -m build --sdist
       - uses: actions/upload-artifact@v3
         with:
           path: dist/*.tar.gz
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 934a7543..0c04d2c8 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -28,6 +28,7 @@ jobs:
           if [ "$GITHUB_BASE_REF" = "master" ] && [ "$MATCH" != "" ]; then exit 1; fi
       - name: Build the package
         run: |
+          pip install build
           python -m build --sdist
 
       - name: Install

From f770844205291ee6360313f2d3b45aa878fbe0c4 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 13:55:26 +0300
Subject: [PATCH 17/24] linters

---
 requirements-linters.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements-linters.txt b/requirements-linters.txt
index 36d44aaa..fab5a2ea 100644
--- a/requirements-linters.txt
+++ b/requirements-linters.txt
@@ -1,7 +1,7 @@
 black<23.0.0
 flake8<=5
 flake8-tidy-imports
-flake8-quotes
+flake8-quotes<3.4.0
 flake8-bugbear
 flake8-comprehensions
 isort

From 07c457bc69bbc10f9ac695a1b8aa06f4fa02c9d6 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 2 Apr 2024 16:08:03 +0300
Subject: [PATCH 18/24] flake

---
 .flake8                  | 3 ++-
 imops/morphology.py      | 4 ++--
 requirements-linters.txt | 2 +-
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/.flake8 b/.flake8
index ce555863..c443919c 100644
--- a/.flake8
+++ b/.flake8
@@ -4,7 +4,8 @@
 # F401: unused imports in __init__.py-s
 # I251: allow absolute imports in upper files
 # B028: !r is not supported for python<3.8
-ignore = W503,E203,B028
+# W604: backticks in str-s are ok
+ignore = W503,E203,B028,W604
 per-file-ignores =
     __init__.py:F401
     tests/*:I251
diff --git a/imops/morphology.py b/imops/morphology.py
index 249adc55..9f19d758 100644
--- a/imops/morphology.py
+++ b/imops/morphology.py
@@ -80,13 +80,13 @@ def wrapped(
             raise ValueError('Input image and footprint number of dimensions must be the same.')
 
         if not image.any():
-            warn(f'{op_name} is applied to the fully False mask (mask.any() == False).', stacklevel=3)
+            warn(f'{op_name} is applied to the fully False mask (mask.any() == False).', stacklevel=3)  # noqa
             output.fill(False)
 
             return output
 
         if image.all():
-            warn(f'{op_name} is applied to the fully True mask (mask.all() == True).', stacklevel=3)
+            warn(f'{op_name} is applied to the fully True mask (mask.all() == True).', stacklevel=3)  # noqa
             output.fill(True)
 
             return output
diff --git a/requirements-linters.txt b/requirements-linters.txt
index fab5a2ea..36d44aaa 100644
--- a/requirements-linters.txt
+++ b/requirements-linters.txt
@@ -1,7 +1,7 @@
 black<23.0.0
 flake8<=5
 flake8-tidy-imports
-flake8-quotes<3.4.0
+flake8-quotes
 flake8-bugbear
 flake8-comprehensions
 isort

From bdb4996d501f8f3579543b3fa67af23c57305d29 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 16 Apr 2024 18:58:36 +0300
Subject: [PATCH 19/24] Revert "fix"

This reverts commit 8d794247a645eee8d04c2130ea9244a7c112cf78.
---
 imops/interp1d.py | 27 ++++-----------------------
 1 file changed, 4 insertions(+), 23 deletions(-)

diff --git a/imops/interp1d.py b/imops/interp1d.py
index d499b6a5..334434fe 100644
--- a/imops/interp1d.py
+++ b/imops/interp1d.py
@@ -2,6 +2,7 @@
 from warnings import warn
 
 import numpy as np
+import torch
 from scipy.interpolate import interp1d as scipy_interp1d
 
 from .backend import BackendLike, resolve_backend
@@ -137,9 +138,7 @@ def __init__(
                 njit_kwargs = {kwarg: getattr(backend, kwarg) for kwarg in backend.__dataclass_fields__.keys()}
                 self.src_interp1d = njit(**njit_kwargs)(numba_interp1d)
 
-    def __call__(self, x_new: np.ndarray, use_torch: bool = False) -> np.ndarray:
-        if use_torch:
-            import torch
+    def __call__(self, x_new: np.ndarray) -> np.ndarray:
         """
         Evaluate the interpolant
 
@@ -182,32 +181,14 @@ def __call__(self, x_new: np.ndarray, use_torch: bool = False) -> np.ndarray:
         if self.backend.name == 'Numba':
             set_num_threads(old_num_threads)
 
-        if use_torch:
-            out = (
-                torch.from_numpy(out)
-                .to(
-                    max(
-                        torch.from_numpy(self.y).dtype,
-                        torch.from_numpy(self.x).dtype,
-                        torch.from_numpy(x_new).dtype,
-                        key=lambda x: x.itemsize,
-                    )
-                )
-                .numpy()
-            )
-        else:
-            out = out.astype(max(self.y.dtype, self.x.dtype, x_new.dtype, key=lambda x: x.type(0).itemsize), copy=False)
+        out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
 
         if self.n_dummy:
             out = out[(0,) * self.n_dummy]
         if self.axis not in (-1, out.ndim - 1):
             out = np.swapaxes(out, -1, self.axis)
         # FIXME: fix behaviour with np.inf-s
-        if use_torch:
-            have_nan = torch.isnan(torch.from_numpy(out)).any()
-        else:
-            have_nan = np.isnan(out).any()
-        if have_nan:
+        if torch.isnan(torch.from_numpy(out)).any():
             if not np.isinf(out).any():
                 raise RuntimeError("Can't decide how to handle nans in the output.")
 

From 3b9ee95df68415eb68d47501aa33cfffb3049cc5 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 16 Apr 2024 18:58:48 +0300
Subject: [PATCH 20/24] Revert "faster"

This reverts commit 97da28f0a3e52dd6268bf8ab46e4ddcf2136c7fb.
---
 imops/interp1d.py | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/imops/interp1d.py b/imops/interp1d.py
index 334434fe..e010cd4b 100644
--- a/imops/interp1d.py
+++ b/imops/interp1d.py
@@ -2,7 +2,6 @@
 from warnings import warn
 
 import numpy as np
-import torch
 from scipy.interpolate import interp1d as scipy_interp1d
 
 from .backend import BackendLike, resolve_backend
@@ -181,14 +180,14 @@ def __call__(self, x_new: np.ndarray) -> np.ndarray:
         if self.backend.name == 'Numba':
             set_num_threads(old_num_threads)
 
-        out = torch.from_numpy(out).to(max(torch.from_numpy(self.y).dtype, torch.from_numpy(self.x).dtype, torch.from_numpy(x_new).dtype, key=lambda x: x.itemsize)).numpy()
+        out = out.astype(max(self.y.dtype, self.x.dtype, x_new.dtype, key=lambda x: x.type(0).itemsize), copy=False)
 
         if self.n_dummy:
             out = out[(0,) * self.n_dummy]
         if self.axis not in (-1, out.ndim - 1):
             out = np.swapaxes(out, -1, self.axis)
         # FIXME: fix behaviour with np.inf-s
-        if torch.isnan(torch.from_numpy(out)).any():
+        if np.isnan(out).any():
             if not np.isinf(out).any():
                 raise RuntimeError("Can't decide how to handle nans in the output.")
 

From 88d8c45bfbbc1927c4be442f15c71f9aaa0a07ab Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 16 Apr 2024 19:14:37 +0300
Subject: [PATCH 21/24] comments

---
 imops/crop.py  | 9 ++++-----
 imops/utils.py | 5 +++++
 2 files changed, 9 insertions(+), 5 deletions(-)

diff --git a/imops/crop.py b/imops/crop.py
index 5c210774..90cb338f 100644
--- a/imops/crop.py
+++ b/imops/crop.py
@@ -3,7 +3,7 @@
 from .backend import BackendLike
 from .numeric import _NUMERIC_DEFAULT_NUM_THREADS
 from .pad import pad
-from .utils import AxesLike, AxesParams, broadcast_axis, fill_by_indices
+from .utils import AxesLike, AxesParams, assert_subdtype, broadcast_axis, fill_by_indices
 
 
 def crop_to_shape(x: np.ndarray, shape: AxesLike, axis: AxesLike = None, ratio: AxesParams = 0.5) -> np.ndarray:
@@ -36,8 +36,8 @@ def crop_to_shape(x: np.ndarray, shape: AxesLike, axis: AxesLike = None, ratio:
     """
     x = np.asarray(x)
     shape = np.asarray(shape)
-    if not np.issubdtype(shape.dtype, np.integer):
-        raise ValueError(f'`shape` must be of integer dtype, got {shape.dtype}')
+    assert_subdtype(shape.dtype, np.integer, 'shape')
+
     axis, shape, ratio = broadcast_axis(axis, x.ndim, shape, ratio)
 
     old_shape, new_shape = np.array(x.shape), np.array(fill_by_indices(x.shape, shape, axis))
@@ -93,8 +93,7 @@ def crop_to_box(
     """
     x = np.asarray(x)
     box = np.asarray(box)
-    if not np.issubdtype(box.dtype, np.integer):
-        raise ValueError(f'`box` must be of integer dtype, got {box.dtype}')
+    assert_subdtype(box.dtype, np.integer, 'box')
 
     start, stop = box
     axis, start, stop = broadcast_axis(axis, x.ndim, start, stop)
diff --git a/imops/utils.py b/imops/utils.py
index 4521ae7e..92d8d5c9 100644
--- a/imops/utils.py
+++ b/imops/utils.py
@@ -196,3 +196,8 @@ def check_len(*args) -> None:
     lengths = list(map(len, args))
     if any(length != lengths[0] for length in lengths):
         raise ValueError(f'Arguments of equal length are required: {", ".join(map(str, lengths))}')
+
+
+def assert_subdtype(dtype, ref_dtype, name):
+    if not np.issubdtype(dtype, ref_dtype):
+        raise ValueError(f'`{name}` must be of {ref_dtype.__name__} dtype, got {dtype}')

From 606e0ff46a63a6ca44ead5b7f216ea637c74f901 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Wed, 17 Apr 2024 13:11:19 +0300
Subject: [PATCH 22/24] Bump codecov

---
 .github/workflows/tests.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 0c04d2c8..5da5ae49 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -74,7 +74,7 @@ jobs:
         if: ${{ always() }}
 
       - name: Upload coverage results
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v4
         with:
           fail_ci_if_error: true
           files: reports/coverage-${{ matrix.python-version }}.xml

From 0291c18cc81e31ba5c33b992cde1989c960c42d5 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 23 Apr 2024 18:11:10 +0300
Subject: [PATCH 23/24] Add codecov token usage

---
 .github/workflows/tests.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 5da5ae49..b8106551 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -75,6 +75,8 @@ jobs:
 
       - name: Upload coverage results
         uses: codecov/codecov-action@v4
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
         with:
           fail_ci_if_error: true
           files: reports/coverage-${{ matrix.python-version }}.xml

From d9d38bec047a037a1fbb3f00094309e4fee3e751 Mon Sep 17 00:00:00 2001
From: Philipenko Vladimir <vovaf709@yandex.ru>
Date: Tue, 23 Apr 2024 18:20:51 +0300
Subject: [PATCH 24/24] Bump workflows

---
 .github/workflows/docs.yml       | 4 ++--
 .github/workflows/release.yml    | 7 +++----
 .github/workflows/test_build.yml | 2 +-
 .github/workflows/tests.yml      | 2 +-
 4 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index cdbe60be..dc8f8d0f 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -11,8 +11,8 @@ jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - uses: fregante/setup-git-user@v1
+      - uses: actions/checkout@v4
+      - uses: fregante/setup-git-user@v2
       - run: git fetch origin gh-pages --depth=1
       - uses: actions/setup-python@v5
         with:
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 4b2c6a7c..3a0e1017 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python 3.9
         uses: actions/setup-python@v5
         with:
@@ -41,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel==2.17.0
@@ -76,7 +76,6 @@ jobs:
           python -m pip install --upgrade pip
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_ARCHS_MACOS: "x86_64 arm64"
           CIBW_ENVIRONMENT_MACOS: >
             PATH="/usr/local/opt/llvm/bin:$PATH" LDFLAGS="-L/usr/local/opt/llvm/lib" CPPFLAGS="-I/usr/local/opt/llvm/include"
           CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-* cp311-* cp312-*
@@ -89,7 +88,7 @@ jobs:
     needs: [ check_version ]
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python 3.9
         uses: actions/setup-python@v5
       - name: Build
diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index ffcc456e..b0498967 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -15,7 +15,7 @@ jobs:
     runs-on: ${{ matrix.os }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: '3.9' 
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index b8106551..322a975d 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -13,7 +13,7 @@ jobs:
         python-version: [ '3.6', '3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v5
         with: