Cleanup and add neurolibre lua filter

data/defaults/neurolibre.yaml

@@ -10,11 +10,12 @@ filters:
     path: draft.lua
   - type: lua
     path: self-citation.lua
+  - type: lua
+    path: neurolibre-handle-crowd.lua
 variables:
   # styling options
   colorlinks: true
-  linkcolor: '[rgb]{0.0, 0.5, 1.0}'
-  urlcolor: '[rgb]{0.0, 0.5, 1.0}'
-
+  linkcolor: '[rgb]{1.0, 0.0, 0.0}'
+  urlcolor: '[rgb]{1.0, 0.0, 0.0}'
 
-template: '${.}/../templates/neurolibre4.latex'
+template: '${.}/../templates/neurolibrenew.tex'

data/filters/draft.lua

@@ -1,15 +1,3 @@
-function CountAuthors(meta)
-  if meta['author'] then
-    -- Check if there is a single author or multiple authors
-    if type(meta['author']) == 'table' then
-      num_authors = #meta['author']
-    else
-      num_authors = 1
-    end
-  end
-  return num_authors
-end
-
 --- Removes and alters metadata for draft output
 function Meta (meta)
   if meta.draft and meta.draft ~= '' then
@@ -18,7 +6,6 @@ function Meta (meta)
     meta.article.volume = '0'
     meta.published = 'unpublished'
     meta.published_parts = os.date('*t')
-    meta.author_number = CountAuthors(meta)
     return meta
   end
 end

data/filters/neurolibre-handle-crowd.lua

@@ -0,0 +1,73 @@
+local stringify = pandoc.utils.stringify
+
+function CountAuthors(meta)
+  if meta['author'] then
+    -- Check if there is a single author or multiple authors
+    if type(meta['author']) == 'table' then
+      num_authors = #meta['author']
+    else
+      num_authors = 1
+    end
+  end
+  return num_authors
+end
+
+function joinTableToString(table)
+  -- Check if the table is empty
+  if #table == 0 then
+      return ""
+  end
+
+  -- Initialize an empty string to hold the joined elements
+  local joinedString = stringify(table[1])
+
+  -- Iterate over the elements of the table and concatenate them with commas and spaces
+  for i = 2, #table do
+      joinedString = joinedString .. ", " .. stringify(table[i])
+  end
+
+  return joinedString
+end
+
+--- Removes and alters metadata for draft output
+function Meta (meta)
+
+  local authors = meta['author']
+  local authorString = ""
+  for i, author in ipairs(authors) do
+    if author['equal-contrib'] then
+      authorString = authorString .. "*"
+    end
+    authorString = authorString .. "{\\Authfont " .. author.name .. "}"
+    -- authorString = authorString .. author.name
+    for j, affiliation in ipairs(author.affiliation) do
+      authorString = authorString .. "\\textsuperscript{" .. affiliation .. "}"
+      if j < #author.affiliation then
+        authorString = authorString .. "\\textsuperscript{,}"
+      end
+    end
+    if i < #authors then
+      authorString = authorString .. ", "
+    end
+  end
+
+  local affiliations = meta.affiliations
+  local affiliationString = ""
+
+  for i, aff in ipairs(affiliations) do
+    -- affiliationString = affiliationString .. i .. tmp .. "\n"
+    affiliationString = affiliationString .. " {\\bfseries " .. stringify(i) .. "}\\hspace{3pt}  " .. stringify(aff.name)
+    -- if i < #affiliations then
+    --   affiliationString = affiliationString .. "\n"
+    -- end
+  end
+
+  meta.affiliationsList = pandoc.RawInline("latex",affiliationString)
+  meta.authorsWithAffiliations = pandoc.RawInline("latex",authorString)
+
+  -- Check if there are more than 10 authors
+  meta.moreThanTenAuthors = #authors > 10
+  meta.noMoreThanTenAuthors = #authors <= 10
+
+  return meta
+end

data/filters/normalize-metadata.lua

@@ -12,19 +12,19 @@ local List = require 'pandoc.List'
 local stringify = pandoc.utils.stringify
 
 local defaults = {
-  archive_doi = '10.5281',
+  archive_doi = '10.55458',
   editor = {
-    name = 'Open Journals',
-    url = 'https://joss.theoj.org',
-    github_user = '@openjournals',
+    name = 'NeuroLibre',
+    url = 'https://neurolibre.org',
+    github_user = '@roboneuro',
   },
   citation_author = '¿citation_author?',
   issue = '¿ISSUE?',
   page = '¿PAGE?',
   paper_url = 'NO PAPER URL',
-  reviewers = {'openjournals'},
-  software_repository_url = 'https://github.com/openjournals',
-  software_review_url = 'https://github.com/openjournals',
+  reviewers = {'roboneuro'},
+  software_repository_url = 'https://github.com/neurolibre',
+  software_review_url = 'https://github.com/neurolibre',
   volume = '¿VOL?',
 }