testing.yml

name: "Run Tests"

on:
  push:
    branches:
      - "master"
  pull_request:
    branches:
      - "*"
  schedule:
    # Run tests every Sunday at 12am
    - cron: "0 0 * * 0"

concurrency:
  group: environment-${{ github.ref }}
  cancel-in-progress: true

jobs:
  # Determine if tests should be run based on commit message.
  check_skip:
    runs-on: ubuntu-latest
    outputs:
      skip: ${{ steps.result_step.outputs.ci-skip }}
    steps:
      - uses: actions/checkout@v2
        with:
          fetch-depth: 0
      - id: result_step
        uses: mstachniuk/ci-skip@master
        with:
          commit-filter: "[skip ci];[ci skip];[skip github]"
          commit-filter-separator: ";"

  run_tests:
    needs: check_skip
    if: ${{ needs.check_skip.outputs.skip == 'false' }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: ["ubuntu-latest", "macos-12"]
        python-version: ["3.8", "3.9", "3.10", "3.11"]

    name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
    defaults:
      run:
        shell: bash
    steps:
      - uses: actions/checkout@v2
      - name: "Set up python"
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: "Display Python version"
        shell: bash {0}
        run: python -c "import sys; print(sys.version)"
      - name: "Install PyMARE"
        shell: bash {0}
        run: pip install -e .[tests,stan]
      - name: "Run tests"
        shell: bash {0}
        run: python -m pytest --pyargs pymare --cov=pymare
      - name: "Upload coverage to CodeCov"
        uses: codecov/codecov-action@v4
        if: success()

  flake8-lint:
    runs-on: ubuntu-latest
    name: Lint with flake8
    steps:
      - name: Check out source repository
        uses: actions/checkout@v2

      - name: Set up Python environment
        uses: actions/setup-python@v2
        with:
          python-version: "3.8"

      - name: "Install the package"
        shell: bash {0}
        run: |
          python -m pip install --progress-bar off --upgrade pip setuptools wheel
          python -m pip install -e .[tests]

      - name: "Run flake8"
        shell: bash {0}
        run: |
          flake8 pymare