gfftk v24.10.30

• bug fix release
• improved parsing for some gtf formats

Full Changelog: v24.2.4...v24.10.30

gfftk v24.2.4

• Upgrade the consensus module, more accurate calls and opposite strand filtering.
• A few bug fixes.

gfftk v23.12.5

Bug fix release:

• fix fasta parser for whitespace #2
• fix genbank cleanup

gfftk v23.9.6

• move to CalVar version system (date)
• update GFF3 parsers
• provide support for genbank flat file output

gfftk v0.1.7

• fix for writing gzip output files

gfftk v0.1.6

• add support for io.BytesIO objects to be used as input -- this won't have an effect on the cli gfftk package, but could benefit as a library if streams are used.

gfftk v0.1.5

• Add support for detecting pseudogenes, ie mRNA features that have CDS with internal stops or those that are previously labeled pseudogenes. Pseudogenes will still be written, however, CDS will not be.
• Add option to gff.gff2dict for gff_format="auto" where the format will try autodetect to parse some different GFF formats. Currently just supports the default and the NCBI-eukaryote format.

gfftk: initial release v0.1.4

Most of this code has pulled out of the funannotate repository to create a separate package/dependency to make the code base easier to maintain. There are some added features here, notably gfftk consensus which is an Evidence-Modeler-like script (still needs a little bit more work to handle some edge cases). This package/library is useful to parse, convert, manipulate genome annotation files (GFF3, TBL, GTF).