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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 161

Repositories

Showing 10 of 92 repositories
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 89 AGPL-3.0 48 82 (1 issue needs help) 12 Updated Nov 23, 2024
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 292 AGPL-3.0 161 240 (4 issues need help) 54 Updated Nov 23, 2024
  • public Public

    repo to house broad planning issues and other cross-repo concerns; see also https://github.com/nextstrain/private

    nextstrain/public’s past year of commit activity
    0 0 9 1 Updated Nov 22, 2024
  • zika-tutorial Public

    Data and scripts for Zika virus tutorial

    nextstrain/zika-tutorial’s past year of commit activity
    Python 10 27 0 2 Updated Nov 22, 2024
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 45 26 26 2 Updated Nov 22, 2024
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base’s past year of commit activity
    Shell 1 1 7 2 Updated Nov 22, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 7 0 Updated Nov 22, 2024
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 21 7 11 5 Updated Nov 22, 2024
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 1 1 Updated Nov 21, 2024
  • infra Public

    Nextstrain shared infrastructure

    nextstrain/infra’s past year of commit activity
    Makefile 0 0 2 1 Updated Nov 21, 2024
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