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11 Open 21 Closed
11 Open 21 Closed
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Issues list

Use genbank_mapping.tsv to join GenBank and SRA/Andersen lab records
#97 opened Oct 16, 2024 by joverlee521
Extend oropouche segment-matching approach to avian flu enhancement New feature or request
#92 opened Oct 2, 2024 by genehack
@jameshadfield
1
NCBI ingest: reduce manual curation of hosts enhancement New feature or request
#91 opened Aug 29, 2024 by joverlee521
1
Add Snakefile.clades rules into main snakefile enhancement New feature or request
#84 opened Aug 16, 2024 by jameshadfield
Explore NCBI Assembly records to link segment sequences
#82 opened Aug 2, 2024 by joverlee521
Adding USDA genotype and lineage enhancement New feature or request
#80 opened Jul 26, 2024 by jameshadfield
Snakemake improvements
#70 opened Jul 9, 2024 by jameshadfield
2
ingest/ncbi: use new augur curate commands
#67 opened Jul 3, 2024 by joverlee521
3 tasks
ingest: Run Nextclade as part of ingest
#44 opened May 31, 2024 by joverlee521
1
@joverlee521
2
Annotate H5 clades through a node data JSON file instead of modifying metadata enhancement New feature or request
#25 opened May 2, 2024 by huddlej
Adopt Nextstrain's Snakemake style guide
#18 opened Apr 25, 2024 by victorlin
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