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Installation

Installation #412

Workflow file for this run

name: Installation
on:
# Routinely check that the latest package is initially installable, to catch
# issues like <https://github.com/nextstrain/monkeypox/issues/177> earlier.
schedule:
# Every day at 17:42 UTC / 9:42 Seattle (winter) / 10:42 Seattle (summer)
- cron: "42 17 * * *"
workflow_dispatch:
jobs:
# The goal here is to make sure installation continues to work successfully
# on a variety of OS versions. We're _not_ testing unreleased package builds
# here—the packages are downloaded from our Anaconda channel—which is why
# this isn't part of CI.
# -trs, 29 August 2022
test:
name: test (os=${{ matrix.os }})
strategy:
fail-fast: false
matrix:
os:
- ubuntu-20.04
- ubuntu-22.04
- macos-12
- macos-13
- macos-14
runs-on: ${{matrix.os}}
steps:
- uses: nextstrain/.github/actions/setup-nextstrain-cli@master
with:
# First Nextstrain CLI version which explicitly installs the latest
# conda-base package version during `nextstrain setup` instead of
# letting Micromamba resolve the package to a potentially older
# version.
# -trs, 9 Oct 2023
cli-version: ">=7.3.0.post1"
runtime: conda
# Surface failures via GitHub issues
failure-reporting:
if: ${{ always() }}
runs-on: ubuntu-latest
needs: [test]
steps:
- uses: actions/checkout@v4
- name: Create or close issue
run: |
# Search for issues opened by this job.
matching_issues=$(gh issue list \
--state open \
--author '@me' \
--json 'number,title' \
--jq 'map(select(.title == "${{ env.title }}") | .number)')
# Handle the case of multiple matching issues, even though this
# shouldn't happen under normal circumstances.
if [[ $(jq length <<<"$matching_issues") -gt 1 ]]; then
echo "ERROR: Multiple matching issues found:" >&2
for issue in $(jq -r '.[]' <<<"$matching_issues"); do
echo "- https://github.com/${{ github.repository }}/issues/$issue" >&2
done
echo "This must be handled manually." >&2
exit 1
fi
existing_issue=$(jq -r '.[0] | values' <<<"$matching_issues")
if [[ "${{ needs.test.result }}" == "failure" ]]; then
if [[ -z "$existing_issue" ]]; then
echo "New failure detected. Creating issue..."
new_issue=$(gh issue create \
--title "$title" \
--body "$body")
echo "Created issue: $new_issue"
else
echo "Open issue already exists: https://github.com/${{ github.repository }}/issues/$existing_issue"
fi
fi
if [[ "${{ needs.test.result }}" == "success" ]]; then
if [[ -n "$existing_issue" ]]; then
echo "Closing issue https://github.com/${{ github.repository }}/issues/$existing_issue"
gh issue close "$existing_issue" \
--comment "Installation is successful as of https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
else
echo "No open issue to be closed."
fi
fi
env:
title: Installation failure
body: |
_Automatically created by [installation.yaml](https://github.com/${{ github.repository }}/blob/${{ github.sha }}/.github/workflows/installation.yaml)_
An installation check has failed: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
This issue will be automatically closed upon the next successful run of the workflow.
GITHUB_TOKEN: ${{ secrets.GH_TOKEN_NEXTSTRAIN_BOT_REPO }}