ceres.config

params {
    config_profile_description = 'USDA ARS SCINet Ceres Cluster profile'
    config_profile_contact = 'Thomas A. Christensen II (@MillironX)'
    config_profile_url = 'https://scinet.usda.gov/guide/ceres/'

    max_memory = 640.GB
    max_cpus = 36
    max_time = 60.d
}

singularity {
    enabled = true
    autoMounts = true
}

process {
    resourceLimits = [
        memory: 640.GB,
        cpus: 36,
        time: 60.d
    ]
    executor = 'slurm'
    scratch = true
    queue = {
        switch (task.memory) {
            case { it >= 216.GB }:
                switch (task.time) {
                    case { it >= 7.d }:
                        return 'longmem'
                    default:
                        return 'mem'
                }
            default:
                switch (task.time) {
                    case { it >= 21.d }:
                        return 'long60'
                    case { it >= 7.d }:
                        return 'long'
                    case { it >= 48.h }:
                        return 'medium'
                    default:
                        return 'short'
                }
        }
    }
}