xanadu.config

params {
    config_profile_description = 'The UConn HPC profile'
    config_profile_contact     = 'noah.reid@uconn.edu'
    config_profile_url         = 'https://bioinformatics.uconn.edu/'

    // max resources
    max_memory                 = 2.TB
    max_cpus                   = 64
    max_time                   = 21.d

    // Path to shared singularity images
    singularity_cache_dir      = '/isg/shared/databases/nfx_singularity_cache'
}

process {
    resourceLimits = [
        memory: 2.TB,
        cpus: 64,
        time: 21.d
    ]
    executor       = 'slurm'
    queue          = { task.memory <= 245.GB ? 'general' : (task.memory <= 512.GB ? 'himem' : 'himem2') }

    clusterOptions = {
        [
            task.memory <= 245.GB ? '--qos=general' : '--qos=himem'
        ].join(' ').trim()
    }
}

executor {
    name            = 'slurm'
    submitRateLimit = '2 sec'
    queueSize       = 100
}

singularity {
    enabled       = true
    cacheDir      = params.singularity_cache_dir
    autoMounts    = true
    conda.enabled = false
}