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Update cambridge.config #571

Merged
merged 1 commit into from
Oct 18, 2023
Merged

Update cambridge.config #571

merged 1 commit into from
Oct 18, 2023

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EmelineFavreau
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adding user-based options for selecting project and partition


name: Updated Config, much more adaptable
about: An existing cluster config

The three new parameters help the HPC user to set the partition, the project and Singularity cache, like so:
nextflow run nf-core/sarek -profile test,cambridge.config --partition "cclake" --project "NAME-SL3-CPU" --cacheDir "/home/<username>/rds/hpc-work/path/to/cache/dir" --outdir nf-sarek-test

adding user-based options for selecting project and partition
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@chriswyatt1 chriswyatt1 left a comment

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Looks good

@EmelineFavreau EmelineFavreau merged commit fc3bb90 into master Oct 18, 2023
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@EmelineFavreau EmelineFavreau self-assigned this Oct 18, 2023
@edmundmiller
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@EmelineFavreau You might want to update the docs for the config as well!

@EmelineFavreau EmelineFavreau deleted the EmelineFavreau-patch-1 branch October 23, 2023 14:10
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3 participants