Changed the aoqn, which didn't work, with aoqn

[ashotmarg]

---

name: Correct config file
about: Correction in the existing config

Please follow these steps before submitting your PR:

• If your PR is a work in progress, include [WIP] in its title
• Your PR targets the master branch
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Steps for adding a new config profile:

• Add your custom config file to the conf/ directory
• Add your documentation file to the docs/ directory
• Add your custom profile to the nfcore_custom.config file in the top-level directory
• Add your custom profile to the README.md file in the top-level directory
• Add your profile name to the profile: scope in .github/workflows/main.yml

[ashotmarg]

Hi @jfy133 , sorry, I have to bug you with this again. For some weird reason the second 'whoami' command substitution doesn't actually work, i.e., i get the literal 'whoami'... So, I guess I either had to create extra groovy variable to extract the username and pass to the cacheDir, or just use the ${USER}, which is working.

[jfy133]

I think in this case it's safer to use something like @nvnieuwk does at Ghent:

configs/conf/vsc_ugent.config

Line 9 in 9984beb

def tier1_project = System.getenv("SBATCH_ACCOUNT") ?: System.getenv("SLURM_ACCOUNT")

Maybe there is a system function to get the output of commands so you can run whoami?

[ashotmarg]

Yeah, there seem to be few other ways of doing this in groovy, but perhaps in this case just the plain ${USER} is more straightforward.