From 562b832894e513c62cd16d0840d6b534130cefee Mon Sep 17 00:00:00 2001
From: Damon-Lee Pointon <51855558+DLBPointon@users.noreply.github.com>
Date: Wed, 20 Sep 2023 15:19:55 +0100
Subject: [PATCH 1/2] Update sanger.config

Updating the sanger profile to take into account the memory limits when assigning queues.

I have decided on the optimal resources per queue as although you can submit a 400GB on normal, the priority becomes so low it will not run for a long time.
---
 conf/sanger.config | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/conf/sanger.config b/conf/sanger.config
index ba02e4ca6..0556a67f6 100644
--- a/conf/sanger.config
+++ b/conf/sanger.config
@@ -6,9 +6,10 @@ params {
 }
 
 // Queue and retry strategy
+// Time and Memory need to be used to decide on the queue
 process{
     executor = 'lsf'
-    queue = { task.time < 20.m ? 'small' : task.time < 12.h ? 'normal' : task.time < 48.h ? 'long' : task.time < 168.h ? 'week' : 'basement' }
+    queue = { task.time < 20.m && task.memory < 50.GB ? 'small' : task.time < 12.h && task.memory < 100.GB ? 'normal' : task.time < 48.h && task.memory < 150.GB ? 'long' : task.time < 168.h && task.memory < 195.GB? 'week' : task.time < 720.h && task.memory < 195.GB ? 'basement' : task.time < 720.h && task.memory < 650.GB ? 'hugemem' : 'teramem' }
 }
 
 // Executor details

From 5e73f1578e0cce5bcca082d631eeb4ba7190607d Mon Sep 17 00:00:00 2001
From: Damon-Lee Pointon <51855558+DLBPointon@users.noreply.github.com>
Date: Wed, 20 Sep 2023 15:49:59 +0100
Subject: [PATCH 2/2] Update sanger.config

---
 conf/sanger.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/sanger.config b/conf/sanger.config
index 0556a67f6..44a29a9e0 100644
--- a/conf/sanger.config
+++ b/conf/sanger.config
@@ -9,7 +9,7 @@ params {
 // Time and Memory need to be used to decide on the queue
 process{
     executor = 'lsf'
-    queue = { task.time < 20.m && task.memory < 50.GB ? 'small' : task.time < 12.h && task.memory < 100.GB ? 'normal' : task.time < 48.h && task.memory < 150.GB ? 'long' : task.time < 168.h && task.memory < 195.GB? 'week' : task.time < 720.h && task.memory < 195.GB ? 'basement' : task.time < 720.h && task.memory < 650.GB ? 'hugemem' : 'teramem' }
+    queue = { task.time < 20.m && task.memory < 20.GB ? 'small' : task.time < 12.h && task.memory < 195.GB ? 'normal' : task.time < 48.h && task.memory < 195.GB ? 'long' : task.time < 168.h && task.memory < 195.GB? 'week' : task.time < 720.h && task.memory > 195.GB && task.memory < 250.GB ? 'basement' : task.time < 720.h && task.memory > 250.GB && task.memory < 680.GB ? 'hugemem' : 'teramem' }
 }
 
 // Executor details