From 9dcfa4805bb1e34161a8a00c330f9a45afc1a5c1 Mon Sep 17 00:00:00 2001
From: Graeme Grimes <Graeme.Grimes@Gmail.com>
Date: Tue, 10 Oct 2023 13:26:44 +0100
Subject: [PATCH] Update eddie.config add BAM_MARKDUPLICATES_PICARD

---
 conf/pipeline/rnaseq/eddie.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/pipeline/rnaseq/eddie.config b/conf/pipeline/rnaseq/eddie.config
index cc870ef97..dce485604 100644
--- a/conf/pipeline/rnaseq/eddie.config
+++ b/conf/pipeline/rnaseq/eddie.config
@@ -1,6 +1,6 @@
 process {
 
-withName : "PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT" {
+withName : "PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT|BAM_MARKDUPLICATES_PICARD" {
     clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
 }