You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello,
We have developed a QC tool named ToulligQC (https://nf-co.re/modules/toulligqc), dedicated to nanopore reads and it has recently been added to the nf-core modules library as well as a nanopore single-cell pipeline (https://nf-co.re/scnanoseq/1.0.0/).
Looking at your pipeline, our tool would be a good addition to do the raw read QC step.
The advantages of our tool are the following:
summary of runs presented as HTML report, with information about the sequencing run, basecalling and demultiplexing steps => read count and length distributions, homogeneity of the run, location of potential flow cell spatial biases, statistics about pass and fail reads
option to split QC by barcoded samples
Here is an example of a ToulligQC report.
I am happy to work on the implementation of ToulligQC and submit a PR, but I wanted to confirm your interest first.
Please feel free to reach out if you have any questions or require further information
The text was updated successfully, but these errors were encountered:
Description of feature
Hello,
We have developed a QC tool named ToulligQC (https://nf-co.re/modules/toulligqc), dedicated to nanopore reads and it has recently been added to the nf-core modules library as well as a nanopore single-cell pipeline (https://nf-co.re/scnanoseq/1.0.0/).
Looking at your pipeline, our tool would be a good addition to do the raw read QC step.
The advantages of our tool are the following:
Here is an example of a ToulligQC report.
I am happy to work on the implementation of ToulligQC and submit a PR, but I wanted to confirm your interest first.
Please feel free to reach out if you have any questions or require further information
The text was updated successfully, but these errors were encountered: