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modules.json
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modules.json
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{
"name": "nf-core/rnafusion",
"homePage": "https://github.com/nf-core/rnafusion",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"agat/convertspgff2tsv": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"arriba": {
"branch": "master",
"git_sha": "ea9e2892a9d12e8769402f12096219942bcf6536",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
"installed_by": ["modules"]
},
"gatk4/bedtointervallist": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"gatk4/markduplicates": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"picard/collectinsertsizemetrics": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "5394565c5fe4c760e5b35977ec7607c62e81d1f8",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"star/align": {
"branch": "master",
"git_sha": "9f6b233518f7d9ecdcf24b798b7e491db5424273",
"installed_by": ["modules"]
},
"star/genomegenerate": {
"branch": "master",
"git_sha": "0e98289b5bec6e3f8f588a8a9d05e8aacc1179a0",
"installed_by": ["modules"]
},
"stringtie/merge": {
"branch": "master",
"git_sha": "b0dcb44b018d9b2bcb35b1abb7bcd34061bc5a6d",
"installed_by": ["modules"]
},
"stringtie/stringtie": {
"branch": "master",
"git_sha": "b0dcb44b018d9b2bcb35b1abb7bcd34061bc5a6d",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}