From e2d4e380b7271e54cf81e22a3580d137660e58b8 Mon Sep 17 00:00:00 2001 From: Franziska Bonath <41994400+FranBonath@users.noreply.github.com> Date: Thu, 27 Feb 2025 13:26:57 +0100 Subject: [PATCH 1/2] Create bytesize_nfcore_variantbenchmarking.md --- .../bytesize_nfcore_variantbenchmarking.md | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md diff --git a/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md b/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md new file mode 100644 index 0000000000..7acc77f559 --- /dev/null +++ b/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md @@ -0,0 +1,19 @@ +--- +title: "Bytesize: nf-core/variantbenchmarking" +subtitle: Kübra Narci, DKFZ Heidelberg +type: talk +startDate: "2025-04-01" +startTime: "13:00+01:00" +endDate: "2025-04-01" +endTime: "13:30+01:00" +locations: + - name: Online + links: + - https://kth-se.zoom.us/j/68390542812 +--- + +Definitively not an Aprils fool joke! The nf-core pipeline [nf-core/varianbenchmarking](https://nf-co.re/variantbenchmarking/v1.0.0/) had it's first release and this week Kübra ([@kubranarci](https://github.com/kubranarci)) is going to talk about its use cases and features! + +nf-core/variantbenchmarking is designed to evaluate and validate the accuracy of variant calling methods in genomic research. +Initially, the pipeline is tuned well for available gold standard truth sets but it can be used to compare any two variant calling results. +The workflow provides benchmarking tools for small variants including SNVs and INDELs, Structural Variants (SVs) and Copy Number Variations (CNVs) for germline and somatic analysis. From 12817a37d75bf2ede1347af2111c65ebdc020092 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?K=C3=BCbra=20Narc=C4=B1?= Date: Thu, 27 Feb 2025 13:33:12 +0100 Subject: [PATCH 2/2] Update bytesize_nfcore_variantbenchmarking.md --- .../events/2025/bytesize_nfcore_variantbenchmarking.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md b/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md index 7acc77f559..fd3edd27db 100644 --- a/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md +++ b/sites/main-site/src/content/events/2025/bytesize_nfcore_variantbenchmarking.md @@ -1,6 +1,6 @@ --- title: "Bytesize: nf-core/variantbenchmarking" -subtitle: Kübra Narci, DKFZ Heidelberg +subtitle: Kübra Narci, German Human Genome-Penome Archieve, DKFZ Heidelberg type: talk startDate: "2025-04-01" startTime: "13:00+01:00" @@ -15,5 +15,5 @@ locations: Definitively not an Aprils fool joke! The nf-core pipeline [nf-core/varianbenchmarking](https://nf-co.re/variantbenchmarking/v1.0.0/) had it's first release and this week Kübra ([@kubranarci](https://github.com/kubranarci)) is going to talk about its use cases and features! nf-core/variantbenchmarking is designed to evaluate and validate the accuracy of variant calling methods in genomic research. -Initially, the pipeline is tuned well for available gold standard truth sets but it can be used to compare any two variant calling results. +The pipeline is primarily tuned well for available gold standard truth sets like Genome in a Bottle or SEQC2 but it can be used to compare any two variant calling results. The workflow provides benchmarking tools for small variants including SNVs and INDELs, Structural Variants (SVs) and Copy Number Variations (CNVs) for germline and somatic analysis.