From 0d4943c46638520dd69dc66f8bc1bf7b6ed7335c Mon Sep 17 00:00:00 2001 From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Date: Mon, 28 Oct 2024 17:19:16 -0600 Subject: [PATCH 1/2] Update Assay.yaml --- modules/Assay/Assay.yaml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/modules/Assay/Assay.yaml b/modules/Assay/Assay.yaml index 5b64408c..73c3b12b 100644 --- a/modules/Assay/Assay.yaml +++ b/modules/Assay/Assay.yaml @@ -503,6 +503,8 @@ enums: proximity extension assay: description: Olink's Proximity Extension Assay (PEA) combines specificity and scalability to enable high-throughput, multiplex protein biomarker analysis. source: https://olink.com/technology/what-is-pea + pure tone average: + description: Metric used to summarize hearing sensitivity at specific frequencies to assess hearing impairment. As PTA increases, hearing ability decreases. quantitative PCR: description: Quantitative PCR (Q-PCR) is used to measure the quantity of a PCR product (commonly in real-time). It quantitatively measures starting amounts of DNA, cDNA, or RNA. meaning: http://purl.obolibrary.org/obo/MI_1195 @@ -597,6 +599,8 @@ enums: whole-cell patch clamp: description: A patch-clamp assay where the electrode is left in place on the cell, as in cell-attached recordings, but the membrane patch has been perforated, providing access from the interior of the pipette to the intracellular space of the cell. Measurements made with this technique involve recording currents through multiple channels simultaneously, over the membrane of the entire cell. meaning: http://purl.obolibrary.org/obo/OBI_0002178 + word recognition score: + description: Assays how well a person can understand speech by repeating a list of words. The WRS is a percentage of words correctly repeated. It's a more functional measure because it predicts whether hearing loss can be improved with amplification. STR profile: description: The analysis of all of the short tandem repeats in the genome of a biological sample. meaning: http://purl.obolibrary.org/obo/NCIT_C129889 From 4ba9c62a52262336d82e37461362084224a427f3 Mon Sep 17 00:00:00 2001 From: "nf-osi[bot]" Date: Mon, 28 Oct 2024 23:22:25 +0000 Subject: [PATCH 2/2] Rebuild NF.jsonld, json --- NF.jsonld | 52 ++++++++++++++++++++++ registered-json-schemas/PortalDataset.json | 2 + registered-json-schemas/Superdataset.json | 2 + 3 files changed, 56 insertions(+) diff --git a/NF.jsonld b/NF.jsonld index 58b04ce2..b665af21 100644 --- a/NF.jsonld +++ b/NF.jsonld @@ -27773,6 +27773,9 @@ { "@id": "bts:Proximityextensionassay" }, + { + "@id": "bts:Puretoneaverage" + }, { "@id": "bts:QuantitativePCR" }, @@ -27863,6 +27866,9 @@ { "@id": "bts:Whole-cellpatchclamp" }, + { + "@id": "bts:Wordrecognitionscore" + }, { "@id": "bts:STRprofile" } @@ -30851,6 +30857,26 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Puretoneaverage", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Puretoneaverage", + "rdfs:subClassOf": [ + { + "@id": "bts:ProtocolAssay" + }, + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "pure tone average", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:QuantitativePCR", "@type": "rdfs:Class", @@ -31434,6 +31460,26 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Wordrecognitionscore", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Wordrecognitionscore", + "rdfs:subClassOf": [ + { + "@id": "bts:ProtocolAssay" + }, + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "word recognition score", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:STRprofile", "@type": "rdfs:Class", @@ -31961,6 +32007,9 @@ { "@id": "bts:Proximityextensionassay" }, + { + "@id": "bts:Puretoneaverage" + }, { "@id": "bts:QuantitativePCR" }, @@ -32051,6 +32100,9 @@ { "@id": "bts:Whole-cellpatchclamp" }, + { + "@id": "bts:Wordrecognitionscore" + }, { "@id": "bts:STRprofile" } diff --git a/registered-json-schemas/PortalDataset.json b/registered-json-schemas/PortalDataset.json index 8d586aa6..026df6d8 100644 --- a/registered-json-schemas/PortalDataset.json +++ b/registered-json-schemas/PortalDataset.json @@ -170,6 +170,7 @@ "positron emission tomography", "PROMIS Cognitive Function", "proximity extension assay", + "pure tone average", "quantitative PCR", "questionnaire", "reactive oxygen species assay", @@ -200,6 +201,7 @@ "whole exome sequencing", "whole genome sequencing", "whole-cell patch clamp", + "word recognition score", "STR profile" ], "title": "assay", diff --git a/registered-json-schemas/Superdataset.json b/registered-json-schemas/Superdataset.json index 0c5f3e71..3c4fc412 100644 --- a/registered-json-schemas/Superdataset.json +++ b/registered-json-schemas/Superdataset.json @@ -170,6 +170,7 @@ "positron emission tomography", "PROMIS Cognitive Function", "proximity extension assay", + "pure tone average", "quantitative PCR", "questionnaire", "reactive oxygen species assay", @@ -200,6 +201,7 @@ "whole exome sequencing", "whole genome sequencing", "whole-cell patch clamp", + "word recognition score", "STR profile" ], "title": "assay",