From 73b4bd8746406f402c426949e7f5301ecad52c0a Mon Sep 17 00:00:00 2001 From: "J. Daniel Smith" Date: Mon, 20 Feb 2023 17:06:22 -0500 Subject: [PATCH] latest from coda-oss (#632) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * latest from coda-oss * Squashed 'externals/coda-oss/' changes from 67d6362bcf..d06dc6534d d06dc6534d mem::AutoPtr for C++17 (#615) 83443602a6 mem::AutoPtr class to aid C++17 transition (#614) f10fa2009c Release 2022-11-04 (#613) a32e697044 remove exception specifications (#609) 084f19126a utilities to find files/directories for unittests (#608) a3cedada96 Merge branch 'master' fde6c864fa Merge pull request #607 from mdaus/bugfix/change-order-of-config-header-install c8a0044010 Install the cmake-configured header after installing the xercesc source tree. Otherwise, the original config will persist in the install dda2c9acda Merge pull request #606 from mdaus/fix-xerces-config 004a00f09b Bump zlib version for conan builds 207f4dbb9f Fix Xerces config issue and install its config.h b842417671 Add support for debug optimizations. 0f6cda57dc Use enhanced debug information with gcc/gdb. 5047dce1a9 Work around GCC avx support bug. 001ab18751 Rebuild the waf self-extractor with a fix for the FIPS error. 5a7f64fca2 Revert "Rebuild the waf self-extractor with a fix for the FIPS problem." 9f6f775f8f Rebuild the waf self-extractor with a fix for the FIPS problem. af7229bd83 utilities to find files from a build (#605) 264ae49dd7 be sure downstream projects build w/C++14 (#604) 7a7b13cbd5 "hello world" for HDF5 (#602) 33cff0ff43 more C++14 963e8ff40c Revert "add HDF5 source code (#603)" 7b5e71a006 add HDF5 source code (#603) ec7bb2e520 add HDF5 source code (#603) ec26f703e7 build in NITRO and SIX (#601) f4361a9730 make it easier to write cli unit-tests (#600) 34b6fdeee1 tweak toString() to reduce specialization (#599) 5907b3ed60 remove C++11 workarounds (#598) caed59480d Release 2022-08-30_cpp14 (#597) 2630d41e08 get rid of merge conflict 652bce3854 Merge branch 'master' 6f41c09d71 Release 2022-08-30 (#596) 838c323d6a Merge branch 'master' f916680126 Added handler accessor to MinidomParser for inheriting modules (#594) 72d29e9c27 get unittests working when "nested" in other projects (#595) f8f18fea5f Actually look at unit test results when using waf (#593) 4189c429e8 Merge branch 'master' cda679ceee more overloads to take a string length (#592) b95a32bc4c by default, Uri()s aren't validated (#591) 903ee7ffff Merge branch 'master' 173930a6f2 fix a UTF-8 conversion bug (#590) a1c0a1eea6 Merge branch 'master' c5c221a832 CODA code inherits from xml.lite classes :-( (#589) 1bfe5fc402 Merge branch 'master' a4c6294c30 use EncodedStringView instead of _bstr_t (#588) 6c2df8bb62 "main" is now C++14 (not C++20) 2ce4161080 Squashed commit of the following: 3a0f7fd14d Merge branch 'master' 83c982f0cf remove work-arounds to write non-UTF-8 XML (#586) 142fd7185e Merge branch 'master' ebf6db1762 is part of C++20 d3aa8aa5ce std::u8string is in C++20, not C++17 03654933c4 changes to math.linear from coda (#587) d442e5be0f Merge branch 'master' 5a2f8e52f1 release 2022-08-02 (#585) e5516aba29 tweak names to match utf8:: conventions (#584) 32f08a9e40 Squashed commit of the following: ee15ba3172 Merge branch 'master' 3083ec7915 move most platform-specific code to EncodedStringView (#583) bede753547 fix unit-test with C++20 61a8033f62 consistent use of coda_oss:: and std:: 5d3bf9eb83 Merge branch 'master' 36371410c0 EncodedString tweaks for XML processing (#582) cf2016205c remove any vestiges of Expat and libXML (#580) 33538aa0fc update for newer Intel compiler ed65e4ccc5 Add two patch candidates to fix FIPS problems in waf. 34c40bd397 Merge branch 'master' a731ebf8e8 release 2022-06-29 (#579) a9b9d2a9fa Merge branch 'master' 59387bd87b update "ReleaseNotes.md" for recent changes (#578) 24a3f01afe Merge branch 'master' e4f940854a remove "boost" and "serialize" (#577) 80b70537e9 update to zlib-1.2.12 (#576) f92811a53b Merge branch 'master' 202084bacb Remove some compiler warnings (#575) 414c25c551 build with C++20 in VS 1a99a29da3 Merge branch 'master' c61232224b build most code with Visual Studio (#574) 5cca863d7e Merge branch 'master' 6e4d952bea some unit-tests need argc/argv (#573) 36e051d7b6 Add run1D method to GenerationThreadPool (#572) 6d4776235e Merge branch 'master' 0a08b8e4e9 build "coda-oss-lite" as a VS2022 project (#571) 6677cc38e3 simplify creation of encodes string (#570) ba62c610c1 Add the 'universal_newlines=True' flag to python Popen calls. 984e4a96ce Fix a bug in waf platform detection. 8f1173f4a6 fix build errors f21af35b0b Merge branch 'master' d2aca8d4b5 release 2022-05-03 (#569) ff55fed596 can't replace all TEST_ASSERT macros with functions (#568) 4db8ada411 restore changes clobbered with merge from "master" a1f36e1839 Merge branch 'master' 89a636a6af fix copy/assignment in EncodedString (#567) c3fe91d424 latest tweaks to build with C++17 (#566) a59a51b571 be sure we use a 64-bit time_t (#565) 1f79fb3ddf Poly2D::atY() bugfix (#564) ac5307662d Testing to see if windows-2019 works with github actions (#563) 8d0726b37e Fix a bug in waf platform detection. 80fe8e9f8a Merge branch 'master' c662b5aac3 Update ReleaseNotes.md ef4a3bbd9a Release 2022-02-22 (aka 2/22/22) (#562) 33b0f3f6eb Merge branch 'master' 8bd0c8cf4a Merge branch 'main' of github.com:mdaus/coda-oss 0a0e6cf145 use char16_t on Linux (#560) 7e41b4b5e4 Merge branch 'feature/use-cpp11-code' fe65bfddfb fix units for ICC, sys::filesystem (#559) fc99e4b3e6 recreate from "master" 510317c07a use std::filesystem to "implement" sys::filesystem 895f6c77cd always implement sys::filesystem 0d83ae22fc "units" changes from master b58173b781 latest from "master" (not quite) 793e3442c8 Squashed commit of the following: 91a729f5a2 re-create from "master" def979170b update to GSL 4.0.0 (#558) fe365e5a41 fix XML validation for UTF-8 (#557) 502e5829b8 support conversion to std::wstring (#556) e69422596a Delete codeql-analysis.yml 45bc6a9640 Create codeql-analysis.yml 87d9a7ef54 remove CodeQL eab5ecb899 Update build_unittest.yml 8ab12d47e9 Delete codeql-analysis.yml 9e542092b8 try running CodeQL as part of build-linux-cmake de0c50651e Create codeql-analysis.yml 049608782b tweaks to build in "coda" (#554) 0ba24233b9 replace sys::U8string with coda_oss::u8string (#553) bcee6551f2 add EncodedString class (#552) c2eecd3925 simplify implementation of EncodedStringView (#551) c1320ef00d fix 'typename' for other compilers (#550) ac3b93931f tweaks to make "main" build easier (#549) 78da741cf5 remove sys/Optional.h (#548) f31730ac77 put our std work-arounds in one place (#547) 9b7bb571a9 Add an EncodedStringView class (#545) c0e1da5201 another batch of tweaks to cleanup compiler warnings, etc. (#546) 0f3bfd9d05 added missing "virtual", support unique_ptr (#544) ca32f99c03 Add option to specify curl installation location. (#501) 2df9c1a819 allow std::filesystem::path to be used for validation (#543) 2891435760 add SinCos for units::Angle (#542) e430eddefb Delete log4j as 1) it's old, 2) coda-oss doesn't use it, and 3) remove any questions about security vulnerability (#541) bb11134fd0 xml.lite tweaks (#540) 955b33e215 Release 2021_12_13 (#539) d73d74d5c1 xml.lite tweaks (#537) 3a90e25c6f use more C++11 functionality (#538) 9ca2a0e50c remove more compiler warnings (#536) 0ec9da1e91 be sure == and != are in-sync (#535) 9084be32c4 fix size_t compiler warnings (#534) abd6469ec8 fix ICC errors (#533) 09cb36fff4 update version number before cutting a new release (#532) c29e4d2988 fix ICC warnings/errors from high-side (#531) 91f8f1c089 simplify our std:: implementations (#530) 7c633c7bb5 Further reduce use of std::auto_ptr (#529) d85883749c Provide support for creating simple version numbers (#528) b035825929 Merge pull request #527 from mdaus/fix-crypt-h-clash ffed3d6339 Disable encryption support in minizip build and remove crypt.h header ee2b2bf8c0 Merge pull request #525 from mdaus/swig-fix 3c02ff2893 Fix config-python prefix issue 6149053d4e Add new config-python module for SWIG compatibility workarounds 30acf5b9af mt::transform_async(), mem::SharedPtr, math::SinCos() (#526) 21efd6a6c9 Implement better workaround for lack of SWIG support for "final" 60837a62ea Revert unneeded changes 0bc994dea7 Fix SWIG path issue for waf build 070f4e9150 Update SWIG generated files f8472b0c46 Fix SWIG path issues and warnings e10707f758 Set minimum SWIG version to 4.0.1 b8cdba5c75 Fix waf SWIG build issue 2bd0ee39e5 Enable SWIG in Github waf build f2b001146f Try fixing SWIG compile issue again afafabcc28 Fix SWIG compile issue on Linux due to missing macro 7c8d4a81d5 Add SWIG to the CI flow 4023d721c5 Regenerate SWIG bindings 1d8c70109c Add some compile definitions needed by SWIG for CMake build e5cc58545f Remove some functions which return unique_ptr from SWIG bindings (incompatible). 965a2913dd Remove "final" specifier from structs bound in SWIG (incompatible) f1bec56014 Merge branch 'master' of https://github.com/mdaus/coda-oss c01c4d7de5 do in-line initialization (#524) fb7230ea1e Update CMakeLists.txt 5dfb056898 tweaks for C++17 (#523) 1a7d3ab522 Merge pull request #515 from mdaus/security-and-conan-updates d13885df66 make it easier to create a new Element with the right encoding (#522) 3fb09e73ab Merge pull request #359 from mdaus/parseArgUpdate 0d546a8f1b Tweak some ArgumentParser tests for the ignoreUnknownArguments option 14bd1f26d4 Merge remote-tracking branch 'origin/master' into parseArgUpdate cf398c0d36 tweak code for C++11/C++17 (#521) 2d0322b070 reduce use of std::auto_ptr (#520) 853320e90f reduce use of deprecated C++98 code (#519) 4752ba2221 Replace some warning pragmas with macros 32685554ff Merge remote-tracking branch 'origin/master' into security-and-conan-updates f0350c0cfd Merge pull request #518 from mdaus/bugfix/python3.9-related fc01df0d8c fix typos in gcc macros 9d356f36cd fix gcc impl 8124da763f remove unreachable code d034b3a849 clobber warnings from numpy innards 9941a401e1 macros to disable warnings around system headers 8a725bb8f3 Merge pull request #516 from mdaus/mbraswell-enablecpp17-windows 2e7b8165ae Fixed pragma stuff on gcc 9775bb02d9 Fixed pragma stuff on gcc 680d3cce41 Merge branch 'master' of https://github.com/mdaus/coda-oss 8ffd6ed790 forgot to add "units" to CMakeFiles.txt 06835676e5 Remove Auto_ptr flag and make disable warnings cross_platform compatible d62efece56 Merge branch 'master' of https://github.com/mdaus/coda-oss into mbraswell-enablecpp17-windows d04042ee9a Merge pull request #517 from mdaus/develop/compiler-warning-helpers cf5cd16b33 Fix macro usage on gcc a88bbcd202 Macros to narrowly target disabling warnings c0d5cdf004 Formatting Changes be019b44b2 Formatting Changes 2eb04dc9e7 Fixed compiler warnings and added option to compile cpp17 with waf on windows 5d9f27faeb Refactor coda-oss conan recipe ce66457149 Disable warning for MSVC2017 and earlier ecfefbfbec Merge remote-tracking branch 'origin/master' into security-and-conan-updates 8b1479881d Merge pull request #514 from mdaus/develop/fix-unused-symbol-errors 1d9a4ec712 Add conan option to use std::regex instead of pcre 6dd5d44576 add required include 4c0ae77811 add required include 1873ceeb8a parameterize build (somewhat) c9ef567a7a fix Release compile error e6b47e94ee fix compiler error eff205ba2d helper macro to fix unusual targets 342098a32c Fix CMake build for modules without include files 5625706ebf Enable cpp17 option for windows builds 98e12b138e Use consistent line endings for *.in template files d01fea0b73 Configure coda_add_module to install more file extension types 30823f673b Delete stray file ac7760ba22 Load dependency targets when loading coda-oss for conan build 14781cab8e Implement conan build for openjpeg and pcre2 dependencies 9d955efa53 Exclude unsupported XML backend wrappers from CMake build to remove warnings 1e8c9b2643 Merge remote-tracking branch 'origin/master' into security-and-conan-updates 772d804951 Implement conan build for libjpeg dependency 98b653dea4 Implement conan build for xerces-c dependency 11323e8e98 Implement conan build for zlib dependency d0e6bf2c4b Improve conan test_package a03e1294e1 Fix uninitialized member variable warning in mt::AbstractTiedThreadPool c7bb47b5f8 Remove member variable duplicated in derived class io::ToggleOutputStream 0838ac2ca2 Use consistent line endings for conan recipes and CMake files. 2768e5f07e Update libjpeg to v9d d75f55bcac Update zlib to 1.2.11 ca2f84cff3 Fix warning in GSL for MSVC 2015 and earlier 1babd19b55 Fix warning in thread tests for MSVC 2f17632496 Fix warning in except module for Visual Studio 2015 and earlier a485bf6bb1 Fix BIGENDIAN redefinition warning 59543e42b2 Disable warning in dbi for MSVC 2017 and earlier b4b212834b Fix warnings in numpyutils for MSVC 2017 and earlier 2b179b6587 Fix integer overflow issue 898151ad75 Hook up simple "units" (#513) 4d6beeecc5 Merge pull request #511 from mdaus/develop/horizontal-improved-numerical-precision c1878b228e Fix for numerical precision issues surrounding horizontal lines 7d1442c66c Merge pull request #510 from mbraswell/fix-testnumelements-build 58fc85f096 Whitespace change to trigger workflow ab74026b9f Fix wscript to successfully build test_num_elements 323283cd78 Merge pull request #509 from mbraswell/develop-mbraswell-cpp17 16a5502896 Added option to enable cpp17 b0625cf5a2 tweak debug stuff (#508) 8455494878 fix RowCol casting (#507) 01fbb5f008 Get std::u8string working right with C++20 (#506) df9413efae more "noexcept" for fewer code-analysis diagnostics (#505) e6219f97f9 reduce compiler warnings/code-analysis diagnostics (#504) 4c9ea0ef18 tweaks for VS2019 16.10 (#503) 0d8ea070a5 reduce compiler warnings (#502) 625b8b59d4 reduce compiler warnings (#500) 3795758da0 get rid of more compiler warnings/code-analysis diagnostics (#499) 427f91be85 reduce compiler-warnings and code-analysis diagnostics (#498) c82dd9e370 cleanup compiler and code-analysis diagnistics (#496) b5105b54ae reduce compiler warnings (#495) e0099cc269 Develop/compiler optimizations (#494) 0eeb3f9638 tweaks to python wrappers made in "nitro" (#492) 5f91f70604 fix printf() format string (#491) 55b855a865 Delete codeql-analysis.yml 603c192d3b Update codeql-analysis.yml f306979e87 Update codeql-analysis.yml 4a1f78f8ef Create codeql-analysis.yml 3c80a65680 add back coda_oss::filesystem::path (#490) eaea659ed3 tweak how std:: features are exposed (#489) 0492f0d95f simplify code exposing std:: routines (#488) e5f3d77701 remove code-analysis diagnostics (#485) 5be599e5af make HOME and USERPROFILE the same (#484) 62b22ae019 cleanup more compiler warnings (#483) c32ec7dcc1 add unit-tests for env-var editing (#482) 311aea4623 allow an environment-variable to be "edited" during expansion (#481) bbcab13103 static_assert is C++11, don't use it when checking for C++11 (#480) 068562f589 fix glitches in expandEnviromentVariables() (#479) 30ed1d95e2 produce a new Path::expandEnviromentVariables() function (#478) 074a873b28 remove compiler warnings (#477) e29f65479f latest C++17 tweaks (#476) c4e681b0ae tweak code when wchar_t is a built-in type (#474) 8449ac29a4 wchar_t might not be a built-in type on old systems (#473) a62bdb3e64 add operator= to sys::Optional (#472) 8e310a776d use compiler-provided macros to determine features (#470) 88405c8edb "constexpr" can be hard to get right with older compilers; don't even try (#471) b195ab3efc need at least VS2017 to use the real GSL (#469) 2978f9114f tweaks to build with older compilers (#468) 7235b898d3 The (old) version of SWIG we're using doesn't like certain C++11 features. (#464) cccde7f126 only look in the Win1252->UTF-8 map as a last resort (#467) 3db09742c1 get rid of more compiler warnings (#465) 5e0d2e8451 get rid of "char8_t" compiler warning (#463) d710bc6882 make getValue() easier to use (#462) f5a9284768 make getElement*() be consistent for both 0 and >1 (#461) 88be6dba35 consistently add C++14/17/20 library features (#459) 59c3a7e2ef use coda_oss:: as a drop-in replacement for std:: (#458) 35de4524c4 use sys::Filesystem::path rather than std::string (#457) cace666005 make sys::Filesystem::path better conform to std::filesystem::path (#456) f395edc891 remove ambiguous overloads w/C++17 (#455) eac4371f19 use newly added sys::Optional<> to manage "encoding" (#454) 243ef5e500 don't derive from std::iterator (#453) a48b011411 Arguments should be "const&" to prevent C4866 (#452) 878bff901f provide std::span (#451) 81727c4854 remove newly added a new pure virtual as that's a breaking change (#450) 93cf0f03ef main -> master (#449) 5af37a7363 be sure code compiles with C++17 (#448) 82b5aecfb5 build with C++17 (#407) 6ffb888d79 reduce compiler warnings (#439) 9137dda7dc GSL (Guideline Support Library) from https://github.com/Microsoft/GSL (#423) bc5552cd20 update to xerces-c-3.2.3 (#409) 6fe09e1dbb update to openjpeg-2.3.1 (#417) 6405c0ce59 reduce differences in #407 (#438) 2987bbf8d6 tweak how std::filesystem is enabled (#437) 8fd3c2f202 tweak how std::endian is enabled (#436) 138372c886 more straight-forward reduction of std::auto_ptr (#435) f13c7cec89 straight-forward reduction of std::auto_ptr (#434) d243b08e1b add mem::auto_ptr for transition to C++17 (#432) 54ed52158e allow clients to specify custom toType and toString (#431) 7f90aab25e remove trailing underscore from macro (#429) 999e490686 with C++11, several sys typedefs are the same on both Windows & *nix (#427) 6f075b1be5 add sys::Byte (#426) 92221bd0d9 allow except::Throwable to derive from std::exception (#421) a8f52d0ad4 reduce compiler warnings (#424) 63ea20af69 #including w/C++17 generates warnings (#408) 10ef060313 reduce compiler warnings (#405) cf233fdcfd forgot Conf.cpp changes for sys::Endian (#403) cc53b18537 fix several compiler warnings/code-analysis diagnostics (#404) 1db3751a3c implmeent sys::Endian from C++20 (#402) f042cd6bb9 support std::filesystem if desired (#400) 4895a9f2dc WIN32 is old, but existing code might still use it; _WIN32 is better (#398) e2a62f8ec2 make it easier to use xml.lite (#396) 1059b7da1c allow for explicit use of a UTF-8 string (#395) 27de8b8a44 Optionally record how std::string is encoded when manipulating XML (#378) e0018cea75 implement some -like routines until we can use C++17 (#388) cafb2365b7 Merge pull request #363 from mdaus/feature/fix-compiler-warnings 6a78bec201 use the existing sys::ubyte rather than making our own pre-C++17 std::byte 14c9fc4ca4 fix a couple of G++ compiler warnings via static_cast<> e596a60070 std::numeric_limits::epsilon() can be "constexpr" 78b0f6bb26 another try at removing the compiler warning from tiff::split() 8e1de21e17 fixed typo; added a few nots about why we're not using strncpy() fed3ba8cdb retore previous tiff::split() code as the change got rid of the compiler warning but wasn't portable 98a589616d get rid of g++ strncpy() warning 798f847117 don't use memset(0) with C++ objects 7f697d078c casting result of system() to void doesn't get rid of compiler warning d55a849c51 remove new g++ compiler warnings in WSL d0aaa29884 Merge pull request #361 from mdaus/feature/fix-compiler-warnings cc62e866b0 fix compiler warnings d45c1f9a09 Updates based on peer review comments which include changing ostream to pointer, adding a couple of more tests, and updating all auto_ptr to unique_ptr in unit test. fb12ba1266 Update ArgumentParser to use a stream as an argument if the ignore unknown argument flag is set to true. 536d2b0cad Added ability to ignore unknown arguments in the ArgumentParser. 27288f49bb Merge pull request #358 from mdaus/conan-options fd5e1eecb7 Expose additional CMake options in conan recipe c972161793 Remove unneeded CMake function git-subtree-dir: externals/coda-oss git-subtree-split: d06dc6534d713ecce71db9986d8db3bb5f7a213f * trying to get git subtree working * Squashed 'externals/nitro/' content from commit 29125a3472 git-subtree-dir: externals/nitro git-subtree-split: 29125a3472688d0c60803c0d6ed922ac5248f69a * git subtree for nitro * pull from main, not master * Squashed 'externals/coda-oss/' changes from d06dc6534d..8241dfe7e6 8241dfe7e6 remove last vestiges of std::auto_ptr (#616) git-subtree-dir: externals/coda-oss git-subtree-split: 8241dfe7e68d566d9b7ca1ccf572279f41cf6848 * latest from nitro * add externals/nitro to fix merge conflicts * remove externals/nitro/externals * Squashed 'externals/nitro/' changes from 29125a3472..52fe000594 52fe000594 latest from coda-oss (#514) 1d29e4d865 remove std::auto_ptr (#513) git-subtree-dir: externals/nitro git-subtree-split: 52fe00059422c54625e26162ae3423ab2f19a8bb * finish deleting externals/nitro/externals * Squashed 'externals/coda-oss/' changes from 8241dfe7e6..ab45464820 ab45464820 remove C++17 workarounds (#618) 3d5daf702e unittests for creating XML from scratch (#617) git-subtree-dir: externals/coda-oss git-subtree-split: ab454648207b2923020bea7614a49def65f1108f * add externals/nitro/externals for sync_externals * remove externals/nitro/externals * Squashed 'externals/nitro/' changes from 52fe000594..ffcce1e304 ffcce1e304 latest from coda-oss (#515) git-subtree-dir: externals/nitro git-subtree-split: ffcce1e3048179e93b0a4da5af3085a66dd3ecb4 * latest from coda-oss and nitro * Squashed 'externals/coda-oss/' changes from ab4546482..566597043 566597043 Conan versioning, hdf5, and pcre2 fixes (#622) 61aa5e430 Squashed commit of the following: 6557ee34c Yet another attempt at finding test files for unittests (#621) 501add035 -march=native for fastest optimization level (#620) f1dd0a5b4 overloads to make creating XML documents easier (#619) git-subtree-dir: externals/coda-oss git-subtree-split: 56659704390d9cd8a19931676454f498b245e027 * latest from coda-oss * NITRO-2.11.2 * Squashed 'externals/coda-oss/' changes from 566597043..418130d4d 418130d4d trying to fix build error on github 59d2f678e Release 2022-12-14 (#628) 1e8244291 new --with-optz=fastest-possible option (#627) 6ae81142d new --optz=faster option for WAF builds (#626) 11206c179 sym-links don't work on Windows filesystems edd3e8fb9 overloads to make simplify routine XML processing (#625) dfece6106 use sym-links rather than copying files (#624) 22f1f0776 build hdf5.lite with WAF (#623) git-subtree-dir: externals/coda-oss git-subtree-split: 418130d4d1c02074963117ba112fd69cf477699d * Squashed 'externals/nitro/' changes from 7306ac86a..46c6702f8 46c6702f8 NITRO-2.11.2 (#521) cd053bd7f coda-oss 2022-12-14 (#520) 28b65f4dc get unittests working in other projects (#518) 9182384db latest from coda-oss (#517) ab88a99f5 Merge branch 'master' b39ccc4c0 Fix conan build issues (#516) abbf7e318 remove .git directory right away 5be12fc35 merge develop/sync_externals 103dd73ee latest from coda-oss (#508) f71128d6f Adding tarfile member sanitization to extractall() (#505) git-subtree-dir: externals/nitro git-subtree-split: 46c6702f869f30fe2dbb1fb85692f3e714d545f6 * NITRO-2.11.2 * latest from coda-oss * Squashed 'externals/coda-oss/' changes from c53304a90..1384b8a5e 1384b8a5e Merge pull request #629 from mdaus/zlib-update ebbd57247 ZIP APIs use std::string in this branch 9cc19fe82 ZIP unittests b8d25d364 Update zlib to 1.2.13 git-subtree-dir: externals/coda-oss git-subtree-split: 1384b8a5e260c4a7418904508b1ab671950d8e45 * Squashed 'externals/nitro/' changes from 76047c7d3..bd741e4f1 bd741e4f1 latest from coda-oss (#522) git-subtree-dir: externals/nitro git-subtree-split: bd741e4f1e850b290b04343e915ac8fba6637157 * latest from coda-oss * copy_externals * Squashed 'externals/coda-oss/' changes from 1384b8a5e..1582c6ac9 1582c6ac9 further progress on implementing hdf5::lite (#631) 0622af1fe rename "11" exception classes to "Ex" (#630) git-subtree-dir: externals/coda-oss git-subtree-split: 1582c6ac9e9f26ee4dbaa7018e6c98ab92ca88ec * Squashed 'externals/nitro/' changes from bd741e4f1..a153ad562 a153ad562 latest from coda-oss (#523) git-subtree-dir: externals/nitro git-subtree-split: a153ad562458b05be7b79fe56596c2d4b8eb9567 * copy_externals * copy_externals * copy_externals * Squashed 'externals/coda-oss/' changes from 1582c6ac9..986307c9c 986307c9c Merge branch 'master' e1b0fa349 commit (but not build) HDF5 source code (#634) 3fd5ddae5 Merge branch 'main' into develop/remove-cpp11-workarounds 37d7ec76e restore C++14 workarounds for older compilers (#632) 244dfdb3d Merge branch 'develop/main' into develop/remove-cpp11-workarounds 714ca4ed7 restore C++14 workarounds for older compilers 640f2247c Delete hdf5-hdf5-1_13_2.tar.gz eb365cbfb Merge branch 'master' into develop/remove-cpp11-workarounds 57b938eeb don't need __INTEL_COMPILER work-around with C++14 65779f3b1 build C code with -std=gnu99 94dc9280f C++14 work-arounds for an old version of the Intel compiler 3744d05e2 slam-in "main" 82b2fd63b restore some C++14 work-arounds for old compilers that only have partial C++14 support 94f6950a2 Merge branch 'main' into develop/remove-cpp11-workarounds 1ac97fe48 add HDF5 source code (not built) (#612) 8ab982820 Squashed commit of the following: 31781a14a remove C++17 work-arounds c15f6930c Revert " is in C++17" 0fe38c16f restore recent buld.py changes 0c75411ee is in C++17 bbbcd562a remove C++11 work-arounds c1e15e9d9 Merge branch 'main' into main-cpp17 bea818fb0 must use C++17 in this branch 91653a096 another place where C++17 is set 7d555f2be back to C++17 b1969d996 merge main 0792c77bf Merge branch 'main' into develop/remove-cpp11-workarounds e49f273c1 Merge branch 'main' into develop/remove-cpp11-workarounds 240b61044 allow sys::Mutex references, instead of pointers, to be passed to sys::ConditionVar 9500d6f4b Merge branch 'main' into develop/remove-cpp11-workarounds f1529942f std::make_unique instead of new be9b6a71c Squashed commit of the following: 62a2ec4e1 Revert "remove our GSL work-around for C++11" 1db082c21 Revert "try the current "main" of GSL" 44b70edde try the current "main" of GSL 4edbf6bad Revert ""There is no warning 4814"" bcd7458be "There is no warning 4814" c185bf3f1 starting working on MutexCpp11 313bdd1d9 AtomicCounter* files have been removed c1c448051 remove our GSL work-around for C++11 37ae1193e remove our mem::SharedPtr, it's now always std::shared_ptr 71f3c1299 remove no-longer-used NSPR code 8e77cb210 removed no-longer-used Irix and Solaris files fabef6966 use std::atomic for all AtomicCounter implementations ace5b6d5a TEST_FAIL -> TEST_FAIL_MSG 30076c1d1 turns out there was already a TEST_FAIL macro d73ee16fb need "::" to find global test ba01c48df remove C++11 workarounds for C++14 features cbd4a31ae Squashed commit of the following: b21c203b8 Squashed commit of the following: 5b542c60f Squashed commit of the following: cb0cf94ff ByteStream.cpp is now warning-free f5daa37fc cast to DWORD; "const" correctness bfaf644ff #pragma-away compiler warnings from standard headers 72d202dbe Merge branch 'master' into develop/reduce-compiler-warnings b076580cd trying to fix GCC compiler warning 1687dc7fc Merge branch 'master' into develop/reduce-compiler-warnings 2c5db86db Merge branch 'master' into develop/reduce-compiler-warnings 6f76c2e3e Update CMakeLists.txt c3ca4a538 do in-line initialization 8e6733618 remove G++ compiler warning a0eff51cf Merge branch 'master' into develop/reduce-compiler-warnings af19d88a6 Merge branch 'master' into develop/reduce-compiler-warnings ba31cbaa9 use "void*" to avoid reinterpret_cast<> 08da1f8a1 Merge branch 'master' into develop/reduce-compiler-warnings d1d453a2e Merge branch 'master' into develop/reduce-compiler-warnings f5074a996 CODA_OSS_NDEBUG is extra gunk and not used; omit for now. 22de48858 don't even bother compiling our own versions of localtime_s() and gmtime_s() if we're not going to use them (compiler warning about "unused static funtion.") 0c92eba58 tweak NDEBUG/CODA_OSS_NDEBUG; update comments 544604775 Don't need to expose our own versions of localtime_s() and gmtime_s() a050796c1 Merge branch 'develop/reduce-compiler-warnings' of github.com:mdaus/coda-oss into develop/reduce-compiler-warnings fed604617 older compilers want std::string() as argument to std::logic_error() cf2c502a6 do more debug & release builds on GitHub d4aa99256 build some debug targets on Gitlab 368245258 tweak CODA_OSS_DEBUG again for G++ 24ba64f71 tweak how CODA_OSS_DEBUG is set 9680e8f0e add check for _GLIBCXX_DEBUG 943218f83 Merge branch 'master' into develop/reduce-compiler-warnings 01c68e705 %#@*@%)*%@ fix RowCol::cast() again! :-( b8472b457 oops ... gsl::narrow<> should be gsl::narrow_cast<> so that int/double conversion doesn't throw 109255ca8 "final" breaks SWIG; wrap RowCol use of gsl::narrow e51e4c2ad no need to create local just to return e546f2510 Merge branch 'master' into develop/reduce-compiler-warnings d1391f989 use template for to_std_string() overloading 566942680 fix std::char8_t when building with C++20 cf604b1ab fix C++17 build errors 48a0fbedb get rid of coda_oss namespace; use CODA_OSS_cpp17 instead 9706a4336 remove code-analysis diagnostics 50592e4f8 G++ complains about an unneeded call to std::move() 9c7643c3f Merge branch 'master' into develop/reduce-compiler-warnings ecfe1f8a7 more "noexcept" b7ac50fb9 Merge branch 'master' into develop/reduce-compiler-warnings eaecf46ed tweak CODA_OSS_cplusplus from "main" 5773b1ec1 trying to get C++17 WAF build working on Windows a048a00a1 unique names for waf & CMake 7a5a0d5b2 do a better job of setting CODA_OSS_DEBUG 4355aae92 Merge branch 'master' into develop/reduce-compiler-warnings 1fd8cede2 cleanup for VS 2019 16.10 4dffa1394 explicitly =delete copy/assignment df8f8920a Merge branch 'master' into develop/reduce-compiler-warnings 42b4e99b6 remove code-analysis diagnostics 70ce322c9 reduce compiler warnings/code-analysis diagnostics when building six 20eac2f49 Merge branch 'master' into develop/reduce-compiler-warnings ff3ded56d get rid of more compiler warnings/code-analysis diagnostics 669dd51ff Merge branch 'master' into develop/reduce-compiler-warnings 623b65ab9 Merge branch 'master' into develop/reduce-compiler-warnings 11c75df53 fix release build errors 66f048b92 turn on more compiler warnings where possible eb615e315 consolidate calls to mem::make::unique a6f5eb690 reduce use of explicit new 84d5e1b01 use mem::make::unique instead of explicit new 019d726ea = default for default constructors 86ab5d8f3 use std::unique_ptr and "const noexcept" b071972d7 another batch of =default for default constructors 98276da94 more =default for default .ctor()s ceb7bc596 do default constructors with =default 7bed51750 more code-analysis cleanup f9c04b117 "noexcept" code-analysis warnings 6586ae390 need gsl::make_span from gsl/span_ext 722089774 remove gsl/mem dependency cycle d741a0761 use gsl::narrow<> instead of static_cast 99eb4b36e get rid of signed/unsigned mismatch compiler warning 814450522 remove more code-analysis diagnostics c8441b309 Merge branch 'master' into develop/reduce-compiler-warnings e6d70a9ff last of "const" from code-analysis b8445814a mark a few more things as "const" per code-analysis d18544ec7 don't need to create temporary std::strings ee7faa979 still more code-analysis cleanup 5cd6f864d cleanup more code-analysis diagnostics 492fb0a86 one more compiler warning about implicitly deleted copy/assignment b8f782c88 remove compiler warnings about implicitly deleted copy/assignment/move 14d1d1cb8 #pragma-away warnings from GSL 86c40ea6c assert() to prevent some code-analysis diagnostics 7204517a9 make copy/assignment explicit 3ce824079 reduce code-analysis diagnostics 01e367a56 Merge branch 'master' into develop/reduce-compiler-warnings 03f3ddde9 proper printf format 877d7dc93 Merge branch 'master' into develop/reduce-compiler-warnings 5a4a3d575 code-analysis doesn't like C-style casts a3fdae416 code-analysis doesn't like NULL 6309baedc Merge branch 'master' into develop/reduce-compiler-warnings d1194a2fe Merge branch 'master' into develop/reduce-compiler-warnings 535b4757d Merge branch 'develop/reduce-compiler-warnings' of github.com:mdaus/coda-oss into develop/reduce-compiler-warnings a60b95d60 "constexpr" can be hard to get right with older C++11 compilers; don't even try c07b5303e Merge branch 'master' into develop/reduce-compiler-warnings 04306bbee need at least VS2017 to use the real GSL 796ad820b Merge branch 'master' into develop/reduce-compiler-warnings 16c240cd6 Merge branch 'master' into develop/reduce-compiler-warnings e07e89f0c turn on "warnings as errors" for CMAKE builds 5c019f891 complex "constexpr" functions not available with our version of g++ 4ab074a58 fix a few more compiler warnings ... nearing the end! :-) dea7ea41b And still more compiler warnings ... almost done 🤞🏻 fbe3bbb20 remove assorted compiler warnings e60b7fd3c Merge branch 'master' into develop/reduce-compiler-warnings e9df212c6 Arguments should be "const&" to prevent C4866 94e75cbed Merge branch 'master' into develop/reduce-compiler-warnings d3130414a Merge branch 'master' into develop/reduce-compiler-warnings 9a5e71f31 Merge branch 'master' into develop/reduce-compiler-warnings bd27c0232 Merge branch 'master' into develop/reduce-compiler-warnings c053362d2 remove still more compiler warnings 9f133b85a remove some more compiler warnings 0883c729c Merge branch 'master' into develop/reduce-compiler-warnings f4b766880 avoid comparision between signed/unsigned to prevent compiler warning 1e6564a6e eliminate more compiler warnings 85a7b8ad0 remove a few compiler warnings 09c82049f Merge branch 'master' into develop/reduce-compiler-warnings 31f1662fa Merge branch 'master' into develop/reduce-compiler-warnings a313562a3 Merge branch 'feature/fix-compiler-warnings' into develop/reduce-compiler-warnings 8547cdd24 eliminiate GCC warnings from Filesystem.h b5044b2a2 fix several compiler warnings/code-analysis diagnostics 9d2f90b8c GetEnvironmentVariable() and getenv() aren't quite the same 6faa3666f remove more compiler warnings git-subtree-dir: externals/coda-oss git-subtree-split: 986307c9c05f6b341e78245d220115fabe5b2fdb * Squashed 'externals/nitro/' changes from e1a64da1f..08cbb96f9 08cbb96f9 build with older C++14 compilers (#524) git-subtree-dir: externals/nitro git-subtree-split: 08cbb96f95ca26da1ee8a42bf408551dc208e37a * copy_externals * latest from coda-oss and nitro * latest from coda-oss and nitro * Squashed 'externals/coda-oss/' changes from 986307c9c..b44709a95 b44709a95 added ComplexSpansView utility (#635) git-subtree-dir: externals/coda-oss git-subtree-split: b44709a950f710ff790aae6f9f8eb9f6ec6b0df8 * Squashed 'externals/nitro/' changes from 08cbb96f9..c71acc492 c71acc492 latest from coda-oss (#526) git-subtree-dir: externals/nitro git-subtree-split: c71acc492f4e00dfd0a3d10147deea0f819135bd * copy_externals * --depth 1 for git-clone * latest from coda-oss * Squashed 'externals/coda-oss/' changes from b44709a95..b04ccca17 b04ccca17 remove more C++11 work-arounds (#641) e460970a7 increase GCC warnings (#640) 91284249b provide ComplexView iterator support (#639) 453b7ec68 try to get std::make_unique working with old Intel compiler (#638) 5736cfd4d is_trivially_copyable for old Intel compiler (#637) 7c2aea38f use H5 SDK naming conventions (#636) fc3008b8d use 'modern' C pre-processor git-subtree-dir: externals/coda-oss git-subtree-split: b04ccca17493e538130c350208da59be42eb6bc7 * Squashed 'externals/nitro/' changes from c71acc492..4ccdf5b37 4ccdf5b37 latest from coda-oss (#527) git-subtree-dir: externals/nitro git-subtree-split: 4ccdf5b3750bc565d45e7b5f3ca161ddb3b6ecb4 * latest from coda-oss * --depth 1 for git-clone * latest from coda-oss and nitro * latest from coda-oss and NITRO * Squashed 'externals/coda-oss/' changes from b04ccca17..9cfe9a4a8 9cfe9a4a8 Merge branch 'master' e989b0910 createElement() needs to be virtual (#646) 4bdaf10d9 Change xml lite function to virtual (#645) d17b57a54 Merge branch 'master' fa00a5430 move debug -g flags to be turned on only if debugging (#644) 6be8f0a2e move debug -g flags to be turned on only if debugging (#644) 44ab72854 routines for simple writing to HDF5 files (#643) aabc5818e remove more C++11 work-arounds (#642) git-subtree-dir: externals/coda-oss git-subtree-split: 9cfe9a4a8b92e982a5afce3938219dc3dc38bcc2 * Squashed 'externals/nitro/' changes from 4ccdf5b37..24ff32863 24ff32863 -j 6 seems to work for SIX, how about NITRO? 713ee8538 -j 6 seems to work for SIX, how about NITRO? git-subtree-dir: externals/nitro git-subtree-split: 24ff328636e3acbf1745e49df45b787403ecb113 * latest from coda-oss and NITRO * Squashed 'externals/coda-oss/' changes from 9cfe9a4a8..b9ea37bbf b9ea37bbf xml::lite::Validator can be moved (#648) git-subtree-dir: externals/coda-oss git-subtree-split: b9ea37bbf3fce6f09a8e1b4bb2deb6abb57ca075 * Squashed 'externals/nitro/' changes from 24ff32863..463c9e418 463c9e418 latest from coda-oss (#531) git-subtree-dir: externals/nitro git-subtree-split: 463c9e4189a86679ff6d9d2d57cdafadcf9281ce * latest from coda-oss and NITRO * latest from coda-oss and NITRO * Squashed 'externals/coda-oss/' changes from b9ea37bbf..81285872f 81285872f build cleanly with all G++ warnings enabled (#649) git-subtree-dir: externals/coda-oss git-subtree-split: 81285872ff37b85594398a6752f7855ad84a2e92 * Squashed 'externals/nitro/' changes from 463c9e418..b871d2b9c b871d2b9c latest from coda-oss (#532) e8ff6b444 apps: fix display of TREs from file extended header section (#529) git-subtree-dir: externals/nitro git-subtree-split: b871d2b9c76d02b9b56f8edb1fdbb5a67fe15d0f * latest from coda-oss and NITRO * fix DECLARE_EXCEPTION syntax * latest from coda-oss and NITRO * Squashed 'externals/nitro/' changes from b871d2b9c..eea09a38d eea09a38d latest from coda-oss (#534) e2f038e45 adjust compiler flags for clean CMake builds (#533) git-subtree-dir: externals/nitro git-subtree-split: eea09a38d87765f6b65d598d1a541f4d8da1bff1 * latest from coda-oss and NITRO * Squashed 'externals/coda-oss/' changes from 81285872f..ba8547621 ba8547621 don't put 'struct' in the macro bd79aa11f require Python 3.7, do MD5 check ecfa687c5 use std::filesystem (instead of sys::filesystem) where possible (#652) 243bc9991 add 'override' c0fd2124d wrap common "file open" routines to support sys::expandEnviromentVariables() (#651) 0657f3297 adjust compiler flags for clean CMake builds (#650) git-subtree-dir: externals/coda-oss git-subtree-split: ba8547621a4fb41ff2b61b21dc46a3ad9a22293a * latest from coda-oss * Squashed 'externals/coda-oss/' changes from ba8547621..4c68fa0d3 4c68fa0d3 fix directory names 5ee2f039a poor-man's version of "import module std;" (#655) fad02842c Add HighFive library (#654) b31f5b6ab have Python 3.6 on a build server git-subtree-dir: externals/coda-oss git-subtree-split: 4c68fa0d34fbc53eb59de36ee3abd3a4978510bb * Squashed 'externals/nitro/' changes from eea09a38d..437978da8 437978da8 latest from coda-oss (#535) git-subtree-dir: externals/nitro git-subtree-split: 437978da8d41ea6279c7e6ea52be84df0d9f9b99 * latest from coda-oss --- externals/coda-oss/UnitTest/pch.h | 25 +- externals/coda-oss/build/build.py | 4 +- .../modules/c++/coda-oss-lite.vcxproj | 4 + .../modules/c++/coda-oss-lite.vcxproj.filters | 12 + .../coda-oss/modules/c++/include/TestCase.h | 2 + externals/coda-oss/modules/c++/pch.h | 22 +- .../modules/c++/std/include/import/cpp14.h | 61 + .../modules/c++/std/include/import/cpp17.h | 36 + .../modules/c++/std/include/import/std.h | 58 + .../coda-oss/modules/drivers/CMakeLists.txt | 1 + .../modules/drivers/hdf5/source/H5MM.c | 4 +- .../modules/drivers/highfive/CMakeLists.txt | 19 + .../drivers/highfive/HighFive-2.6.2.zip | Bin 0 -> 9815 bytes 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externals/coda-oss/modules/drivers/highfive/include/highfive/H5DataSet.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5DataSpace.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5DataType.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5Easy.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5Exception.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5File.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5FileDriver.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5Group.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5Object.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/H5PropertyList.hpp create mode 100644 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externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Path_traits.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Path_traits_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5PropertyList_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5ReadWrite_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Reference_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Selection_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Slice_traits.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Slice_traits_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5Utils.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/bits/H5_definitions.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_Eigen.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_misc.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_opencv.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_public.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_scalar.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_vector.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/highfive/h5easy_bits/H5Easy_xtensor.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/include/import/highfive.h create mode 100644 externals/coda-oss/modules/drivers/highfive/unittests/tests_high_five.hpp create mode 100644 externals/coda-oss/modules/drivers/highfive/unittests/tests_high_five_base.cpp create mode 100644 externals/coda-oss/modules/drivers/highfive/wscript diff --git a/externals/coda-oss/UnitTest/pch.h b/externals/coda-oss/UnitTest/pch.h index 5a5d99b1ce..8229e0b47a 100644 --- a/externals/coda-oss/UnitTest/pch.h +++ b/externals/coda-oss/UnitTest/pch.h @@ -23,34 +23,15 @@ #include #include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include +#include "import/std.h" + #include #include #include #include #include -#include -#include // std::endian -#include -#include // std::accumulate #include -#include -#include -#include -#include -#include +#include // std::endian #include "CppUnitTest.h" diff --git a/externals/coda-oss/build/build.py b/externals/coda-oss/build/build.py index c030bafaf2..e9fd0ecdea 100644 --- a/externals/coda-oss/build/build.py +++ b/externals/coda-oss/build/build.py @@ -35,8 +35,8 @@ for ext in COMMON_EXCLUDES_EXT: TaskGen.extension(ext)(Utils.nada) -if sys.version_info < (3,7,0): - raise Errors.WafError('Build system requires at least Python 3.7') +if sys.version_info < (3,6,0): + raise Errors.WafError('Build system requires at least Python 3.6') # provide a partial function if we don't have one try: diff --git a/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj b/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj index 9b1eac0299..ab34ea98a9 100644 --- a/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj +++ b/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj @@ -28,6 +28,7 @@ + @@ -175,6 +176,9 @@ + + + diff --git a/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj.filters b/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj.filters index 76ec00124b..75b5514713 100644 --- a/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj.filters +++ b/externals/coda-oss/modules/c++/coda-oss-lite.vcxproj.filters @@ -723,6 +723,18 @@ mem + + std + + + std + + + std + + + config + diff --git a/externals/coda-oss/modules/c++/include/TestCase.h b/externals/coda-oss/modules/c++/include/TestCase.h index 592dc105cc..a068260e0d 100644 --- a/externals/coda-oss/modules/c++/include/TestCase.h +++ b/externals/coda-oss/modules/c++/include/TestCase.h @@ -135,10 +135,12 @@ inline void specific_exception(TFunc f, diePrintf(format, testName, file, func, line); } catch (const TException&) { } + #if !CODA_OSS_except_Throwable_ISA_std_exception catch (const except::Throwable&) { diePrintf(format, testName, file, func, line); } + #endif catch (const std::exception&) { diePrintf(format, testName, file, func, line); diff --git a/externals/coda-oss/modules/c++/pch.h b/externals/coda-oss/modules/c++/pch.h index 95b9430b41..342ae85267 100644 --- a/externals/coda-oss/modules/c++/pch.h +++ b/externals/coda-oss/modules/c++/pch.h @@ -37,27 +37,7 @@ #include #include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include +#include "import/std.h" #include #include #include diff --git a/externals/coda-oss/modules/c++/std/include/import/cpp14.h b/externals/coda-oss/modules/c++/std/include/import/cpp14.h new file mode 100644 index 0000000000..f91af67f17 --- /dev/null +++ b/externals/coda-oss/modules/c++/std/include/import/cpp14.h @@ -0,0 +1,61 @@ +/* ========================================================================= + * This file is part of std-c++ + * ========================================================================= + * + * (C) Copyright 2004 - 2014, MDA Information Systems LLC + * (C) Copyright 2023, Maxar Technologies, Inc. + * + * std-c++ is free software; you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as published by + * the Free Software Foundation; either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this program; If not, + * see . + * + */ + + +#ifndef CODA_OSS_import_cpp14_h_INCLUDED_ +#define CODA_OSS_import_cpp14_h_INCLUDED_ +#pragma once + +// Common C++14 headers +#include +#include +#include + +#include +#include +#include +#include +#include +#include +#include +#include + +#include +#include +#include +#include + +#include +#include +#include +#include +#include + +#include +#include +#include +#include + +#endif // CODA_OSS_import_cpp14_h_INCLUDED_ + + diff --git a/externals/coda-oss/modules/c++/std/include/import/cpp17.h b/externals/coda-oss/modules/c++/std/include/import/cpp17.h new file mode 100644 index 0000000000..a03b2c5dad --- /dev/null +++ b/externals/coda-oss/modules/c++/std/include/import/cpp17.h @@ -0,0 +1,36 @@ +/* ========================================================================= + * This file is part of std-c++ + * ========================================================================= + * + * (C) Copyright 2004 - 2014, MDA Information Systems LLC + * (C) Copyright 2023, Maxar Technologies, Inc. + * + * std-c++ is free software; you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as published by + * the Free Software Foundation; either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this program; If not, + * see . + * + */ + +#ifndef CODA_OSS_import_cpp17_h_INCLUDED_ +#define CODA_OSS_import_cpp17_h_INCLUDED_ +#pragma once + +#include "cpp14.h" + +// Common C++17 headers +#include +#include + +#endif // CODA_OSS_import_cpp17_h_INCLUDED_ + + diff --git a/externals/coda-oss/modules/c++/std/include/import/std.h b/externals/coda-oss/modules/c++/std/include/import/std.h new file mode 100644 index 0000000000..426a80f0c4 --- /dev/null +++ b/externals/coda-oss/modules/c++/std/include/import/std.h @@ -0,0 +1,58 @@ +/* ========================================================================= + * This file is part of std-c++ + * ========================================================================= + * + * (C) Copyright 2004 - 2014, MDA Information Systems LLC + * (C) Copyright 2023, Maxar Technologies, Inc. + * + * std-c++ is free software; you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as published by + * the Free Software Foundation; either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this program; If not, + * see . + * + */ + + +#ifndef CODA_OSS_import_std_h_INCLUDED_ +#define CODA_OSS_import_std_h_INCLUDED_ +#pragma once + +#include "coda_oss/CPlusPlus.h" +#include "config/disable_compiler_warnings.h" + +CODA_OSS_disable_warning_push +#if _MSC_VER +#pragma warning(disable: 4619) // #pragma warning: there is no warning number '...' + +#pragma warning(disable: 4710) // '...': function not inlined +#pragma warning(disable: 5027) // '...': move assignment operator was implicitly defined as deleted +#pragma warning(disable: 5026) // '...': move constructor was implicitly defined as deleted +#pragma warning(disable: 4626) // '...': assignment operator was implicitly defined as deleted +#pragma warning(disable: 4625) // '...': copy constructor was implicitly defined as deleted +#pragma warning(disable: 4355) // '...': used in base member initializer list +#pragma warning(disable: 5220) // '...': a non-static data member with a volatile qualified type no longer implies that compiler generated copy/move constructors and copy/move assignment operators are not trivial +#pragma warning(disable: 5204) // '...': class has virtual functions, but its trivial destructor is not virtual; instances of objects derived from this class may not be destructed correctly +#pragma warning(disable: 5264) // '...': '...' variable is not used +#endif // _MSC_VER + +// Common C++14 headers +#include "cpp14.h" + +#if CODA_OSS_cpp17 +#include "cpp17.h" +#endif + +CODA_OSS_disable_warning_pop + +#endif // CODA_OSS_import_std_h_INCLUDED_ + + diff --git a/externals/coda-oss/modules/drivers/CMakeLists.txt b/externals/coda-oss/modules/drivers/CMakeLists.txt index 2d580634e3..e9aeba4a1a 100644 --- a/externals/coda-oss/modules/drivers/CMakeLists.txt +++ b/externals/coda-oss/modules/drivers/CMakeLists.txt @@ -76,4 +76,5 @@ set(CODA_ENABLE_HDF5 ON CACHE BOOL "enable hdf5") set(CODA_HDF5_HOME "" CACHE PATH "path to pre-existing HDF5 installation, if not provided HDF5 will be built") if (CODA_ENABLE_HDF5 OR CODA_HDF5_HOME) add_subdirectory("hdf5") + add_subdirectory("highfive") endif() diff --git a/externals/coda-oss/modules/drivers/hdf5/source/H5MM.c b/externals/coda-oss/modules/drivers/hdf5/source/H5MM.c index 9c03ceb338..68c8633015 100644 --- a/externals/coda-oss/modules/drivers/hdf5/source/H5MM.c +++ b/externals/coda-oss/modules/drivers/hdf5/source/H5MM.c @@ -658,7 +658,9 @@ H5MM_memcpy(void *dest, const void *src, size_t n) HDassert(src); /* Check for buffer overlap */ - HDassert((char *)dest >= (const char *)src + n || (const char *)src >= (char *)dest + n); + const char* src_n = (const char*)src + n; + const char* dest_n = (const char*)dest + n; + HDassert((const char *)dest >= src_n || (const char *)src >= dest_n); /* Copy */ ret = HDmemcpy(dest, src, n); diff --git a/externals/coda-oss/modules/drivers/highfive/CMakeLists.txt b/externals/coda-oss/modules/drivers/highfive/CMakeLists.txt new file mode 100644 index 0000000000..32f2ba30d8 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/CMakeLists.txt @@ -0,0 +1,19 @@ +set(MODULE_NAME highfive) +set(TARGET_LANGUAGE c++) + +if(CODA_ENABLE_HDF5) + set(MODULE_DEPS config-c++ sys-c++) + list(APPEND MODULE_DEPS hdf5-c++) + + coda_add_module( + ${MODULE_NAME} + VERSION 2.6.2 + DEPS ${MODULE_DEPS}) + + coda_add_tests( + MODULE_NAME ${MODULE_NAME} + DIRECTORY "unittests" + UNITTEST) +else() + message("${MODULE_NAME} will not be built since HDF5 is not enabled") +endif() diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2.zip b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2.zip new file mode 100644 index 0000000000000000000000000000000000000000..0668a026bb050bad443d2b1224b9da6d4cfda006 GIT binary patch literal 9815 zcmb7~bzGEd)5jO2LrRcFkY)*K1XQ{~q>+ZDmt0x_L0V8kV(IRdlgF=h`E!|RjldZTg#}Zs7dInN+>*(7g3eC3XB>) z%*EEh%GBD{#SxZ+_IDzu)8%Q71@hGdK@7?QGyM_f4=^OtRta)#s!_*4!;s|=gR-nYKTK#ri%5BgNJ z458zk7jD&iPJLiZiX1XXKWg8)cauh`Ot*)f*WAjllFf9_){RagT!|MXfG5xa`FK1! zS+VtaDQ1G03}@bZYi7QMdgvCxqtJrWgp=#sOy~)IQtPw9X4iI1DN&Mxo{|?n^__A% zJxT*Iw@1?uY#yLSI6*n|ZEwYP#x|ifPPJE>$c~~c>g9xX8IB8~aeV(2&K7TjuBB9~(&$q$ z&b7C_^x2P^_Fb+4=25l-%B>fYhB0N6R(ABjy?Mn^GCjk#KqWiiQSof2CoV4iLl0<8 zvZ=~(^q}8f2RFSk`Ll{Z-wv}I0Y%?)4{Lk zT6-3|TPCGcMa?~1%?$zc7532Lj;99rp&~??Es8>c0@yLhneTrLE*cinu zs1L>NRbM0apn)v3GPA@+6c*NhLHBiXI1@}QH56CO;d^~gdAj2PE2Kqq#w5EouXHHz z6EU^Rct808p1*qpuBZ3?5^$Woyy)WnnB>Q)t8Q)STxOpe90kn?dpVPy3A_eN$Wte4 zSL;xF17XD7JwjR>9M!xV&{NKr61j&|-?2X)S=oKt z4NIe1C>2HRO2+K{-d6W)1S$@5#SeZb-+$yd26(M@>UEJs4Q?+Ikz?b@{=oFlF2vX9%Wz)EUYUR9paifHt zg{(YbANrt@|6*N^>wn{ z(#go{zFTr(TVwXOx2A8uGs&r#HY|{;dI^$eWv9trTw+A5qjo78chgqHQQ9)vJZ)1* zcT<|%qr^8BP{zsgye6j-JSB_QNT8?$!-bSR*=($@>p@g^TBwLnfT0k8nEn(nm%bCwv zYbaO&Na#_6pBlZ779ZZPGrx2Z-k>=9DCoU>lQd? 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"${CMAKE_OPTIONS[@]}" + cmake --build build --target doc + cp -r doc/poster build/doc/html/ + + - name: Deploy to GitHub Pages + if: ${{ success() && github.ref == 'refs/heads/master' && github.event_name == 'push' }} + uses: crazy-max/ghaction-github-pages@v2 + with: + target_branch: gh-pages + build_dir: build/doc/html + jekyll: false + keep_history: false + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.github/workflows/integration_trigger.yml b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.github/workflows/integration_trigger.yml new file mode 100644 index 0000000000..3fe65f329f --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.github/workflows/integration_trigger.yml @@ -0,0 +1,15 @@ +name: Integration Test Trigger +on: + pull_request: + types: [closed] +jobs: + merge-PR: + if: github.event.pull_request.merged == true + runs-on: ubuntu-latest + steps: + - name: Trigger integration tests on BlueBrain/HighFive-testing + run: | + curl -X POST https://api.github.com/repos/BlueBrain/HighFive-testing/dispatches \ + -H 'Accept: application/vnd.github.everest-preview+json' \ + -u ${{ secrets.ACCESS_TOKEN }} \ + --data '{"event_type": "merge", "client_payload": { "repository": "'"$GITHUB_REPOSITORY"'" }}' diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitignore b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitignore new file mode 100644 index 0000000000..75c4e044b8 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitignore @@ -0,0 +1,5 @@ +build +tests/test_project +.idea + +.vs/ diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitmodules b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitmodules new file mode 100644 index 0000000000..615f78fe15 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.gitmodules @@ -0,0 +1,3 @@ +[submodule "deps/catch2"] + path = deps/catch2 + url = https://github.com/catchorg/Catch2.git diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.travis.yml b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.travis.yml new file mode 100644 index 0000000000..bc5d340810 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/.travis.yml @@ -0,0 +1,138 @@ +# Adapted from various sources, including: +# - Louis Dionne's Hana: https://github.com/ldionne/hana +# - Paul Fultz II's FIT: https://github.com/pfultz2/Fit +# - Eric Niebler's range-v3: https://github.com/ericniebler/range-v3 +# - Gabi Melman spdlog: https://github.com/gabime/spdlog + +sudo: required +language: cpp + +addons: &gcc7 + apt: + packages: + - g++-7 + - libboost-all-dev + - libhdf5-openmpi-dev + - libeigen3-dev + - ninja-build + sources: + - ubuntu-toolchain-r-test + +matrix: + include: + # Older linux (trusty) with default gcc + # Install serial hdf5 + build serial + - os: linux + dist: trusty + env: + - HIGHFIVE_USE_XTENSOR=False + - HIGHFIVE_USE_OPENCV=False + - HIGHFIVE_PARALLEL_HDF5=False + - IS_BASE_ENVIRON=1 + addons: + apt: + packages: + - libboost-all-dev + - libeigen3-dev + - libhdf5-serial-dev + - ninja-build + + # Linux gcc-7 + # Install parallel hdf5 + build parallel + - os: linux + dist: xenial + env: + - GCC_VERSION=7 + - HIGHFIVE_USE_XTENSOR=True + - HIGHFIVE_USE_OPENCV=False + - HIGHFIVE_PARALLEL_HDF5=True + addons: *gcc7 + + # Mac OSX XCode 10 + - os: osx + osx_image: xcode10.3 + env: + - HIGHFIVE_USE_XTENSOR=True + - HIGHFIVE_USE_OPENCV=True + - HIGHFIVE_PARALLEL_HDF5=False + + # Windows + - os: windows + env: + - HIGHFIVE_USE_XTENSOR=True + - HIGHFIVE_USE_OPENCV=True + - HIGHFIVE_PARALLEL_HDF5=False + +env: + global: + - MINCONDA_VERSION="latest" + - MINCONDA_LINUX="Linux-x86_64" + - MINCONDA_OSX="MacOSX-x86_64" + +install: + - export HOMEBREW_NO_AUTO_UPDATE=1 # for reproducibility, dont autoupdate + + - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then + MINCONDA_OS=$MINCONDA_LINUX; + elif [[ "$TRAVIS_OS_NAME" == "osx" ]]; then + if [ "$BREW_USE_LATEST" ]; then + brew update; + brew install hdf5; brew upgrade hdf5; + fi; + brew install boost hdf5 eigen ninja; + MINCONDA_OS=$MINCONDA_OSX; + fi + + - if [[ "$TRAVIS_OS_NAME" == "windows" ]]; then + export CMAKE_GENERATOR="Visual Studio 15 2017 Win64" ; + export TESTS_TARGET="RUN_TESTS"; + choco install --yes miniconda3 ; + source C:/Tools/miniconda3/Scripts/activate ; + else + export CMAKE_GENERATOR="Ninja" ; + export TESTS_TARGET="test"; + wget "http://repo.continuum.io/miniconda/Miniconda3-$MINCONDA_VERSION-$MINCONDA_OS.sh" -O miniconda.sh; + bash miniconda.sh -b -p $HOME/miniconda ; + source $HOME/miniconda/bin/activate; + hash -r ; + fi + - conda config --set always_yes yes --set changeps1 no + - conda update -q conda + - conda install -c conda-forge mamba + - if [[ "$HIGHFIVE_USE_XTENSOR" == "True" ]]; then + mamba install -c conda-forge xtl xsimd xtensor; + fi + - if [[ "$HIGHFIVE_USE_OPENCV" == "True" ]]; then + mamba install -c conda-forge libopencv opencv; + fi + - if [[ "$TRAVIS_OS_NAME" == "windows" ]]; then + mamba install -c conda-forge boost-cpp hdf5 eigen; + fi + +before_script: + - if [ -n "$GCC_VERSION" ]; then export CXX="g++-${GCC_VERSION}" CC="gcc-${GCC_VERSION}"; fi + - if [ -n "$CLANG_VERSION" ]; then export CXX="clang++-${CLANG_VERSION}" CC="clang-${CLANG_VERSION}"; fi + - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then export CXX="clang++" CC="clang"; fi + - which $CXX + - which $CC + - $CXX --version + - cmake --version + +script: + - cd ${TRAVIS_BUILD_DIR} + - mkdir -p build && pushd build + - > + cmake --warn-uninitialized --debug-output + -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON + -DHIGHFIVE_TEST_SINGLE_INCLUDES:BOOL=ON + -DHIGHFIVE_PARALLEL_HDF5:BOOL=${HIGHFIVE_PARALLEL_HDF5} + -DHIGHFIVE_USE_EIGEN:BOOL=ON + -DHIGHFIVE_USE_XTENSOR:BOOL=${HIGHFIVE_USE_XTENSOR} + -DHIGHFIVE_USE_OPENCV:BOOL=${HIGHFIVE_USE_OPENCV} + -G "${CMAKE_GENERATOR}" ../ + - cmake --build . + - CTEST_OUTPUT_ON_FAILURE=1 cmake --build . --target ${TESTS_TARGET} + - popd + - if [ $IS_BASE_ENVIRON ]; then + bash tests/test_project_integration.sh; + fi diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/AUTHORS.txt b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/AUTHORS.txt new file mode 100644 index 0000000000..ed89f76832 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/AUTHORS.txt @@ -0,0 +1,52 @@ +Adrien Devresse +Alexandru Săvulescu +Ali Can Demiralp +Angelos Plastropoulos +Chris Byrohl +Chris De Grendele +@contre +Daniel Nachbaur +Dmitri Bichko +@eudoxos +Fernando L. Pereira +@guoxy +Haoran Ni +Henry Schreiner +@JaWSnl +Jia Li +John W. Peterson +Jonas Karlsson +Jorge Blanco Alonso +Kerim Khemraev +Luc Grosheintz +Marian Heil +Mario Emmenlauer +Mark Bicknell +Mathieu Bernard +Matthias Wolf +Maximilian Nöthe +@Mightrider +Mike DePalatis +Mike Gevaert +Nico Jahn +Nicolas Cornu (maintainer) +Omar Awile +Pablo Toharia +Philip Deegan +Philipp Gloor +Pramod Kumbhar +Richard Shaw +Rick Nitsche +Rob Latham +Sergio Botelh +Sergio Rivas-Gomez +@spacescientist +Taiguara Tupinambás +@timocafe +Tino Wagner +Tobias Klauser +Tom de Geus +Tom Vander Aa +Tristan Carel +Wolf Vollprecht +Y. Yang diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CHANGELOG.md b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CHANGELOG.md new file mode 100644 index 0000000000..f6bf0bb2fa --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CHANGELOG.md @@ -0,0 +1,220 @@ +## Version 2.6.2 - 2022-11-10 +### Bug Fix + - Allow CMake to use Config mode to find HDF5. + +## Version 2.6.1 - 2022-11-08 +### Bug Fix + - Version bump in `CMakeLists.txt`. + +## Version 2.6.0 - 2022-11-08 +### New Features + - Enable page buffered reading (#639). + +### Improvements + - Warn when detecting lossy reads or write of floating point data (#636). + +## Version 2.5.1 - 2022-11-07 +### Bug Fix + - Fix missing `inline` for collective metadata properties. + +## Version 2.5.0 - 2022-11-03 +### New Features + - Enable collective MPI IO using the Data Transfer Property (#623). Thanks to Rob Latham. + - Add a support for half-precision (16-bit) floating-point based on the Half library (http://half.sourceforge.net) (#587). Thanks to Sergio Botelh. + - Enable choosing the allocation time of datasets (#627). + - Add possibility to get and set file space strategy. For page allocated files wrap the API to set/retrieve the page size (#618). + - Add API for getting Access and Create property lists of HighFive objects (#629). + - Let users configure metadata reads and writes at file level (#624). Thanks to Rob Latham. + +### Improvements + - MPIOFileDriver is now deprecated. Use FileAccessProps (#622). + - Support of block argument in API (#584). + - Serialization of types is now automagic and so recursive (#586). + - Add an argument to specific File Create Properties in File class construtor (#626). + +### Bug Fixes + - Padding of Compound Types (#581). + - Compilation with Visual Studio with C++17 or later (#578). Thanks to Mark Bicknell. + - Avoid leaking when printing stack for error (#583). + +## Version 2.4.1 - 2022-05-11 +### New Features + - Support `std::complex`. Thanks to Philipp. + +### Improvements + - Improve EnumType/CompoundType + - Revert quirky behaviour of `select(const HyperSlab&)`. + - All `get_name` functions takes `size_t` and not `hsize_t`. + - Remove nix recipes. + +### Bug Fixes + - Computation of padding. + - Related to `0` being an invalid hid but not equal to `H5I_INVALID_HID`. + +## Version 2.4.0 - 2022-04-05 +### New Features + - Construct a compound type from an already existing hid (#469). Thanks to Maximilian Nöthe. + - Add support for long double (#494) + - Add support for H5Pset_libver_bounds and H5Pset_meta_block_size support (#500) + - New interface to select complex hyperslabs, irregular hyperslabs are limited to/from 1D array (#538 and #545) +### Improvements + - Use inline where it is needed, otherwise some code can lead to "multiple definition" (#516). Thanks to Chris Byrohl. + - Use Catch2 instead of boost for tests, reduces dependencies (#521) + - CI reworked to test external libraries more thoroughly (boost, eigen, xtensor) (#536) +### Bug Fixes + - Better support of const types (#460). Thanks to Philip Deegan. + - Vector of size zero was previously lead to UB (#502). Thanks to Haoran Ni. + - Use H5T_NATIVE_SCHAR instead of H5T_NATIVE_CHAR for "signed char" (#518) + +## Version 2.3.1 - 2021-08-04 +### Improvements + - Clean cmake files from old code (#465) + - Adding path to type warning message (#471) + - Adding compound types example, w dataset and attr (#467) + +### Bug Fixes + - Resolve an issue where padding of nested compound types were being calculated incorrectly (#461) (#468) + - GHA: drop previous runs (#462) + +## Version 2.3 - 2021-05-07 +### New Features: + - Add SZIP support (#435) + - Add option *parents* to createDataSet (#425) + - Implementing getting the filename dynamically (#424) + - Ability to create soft and external links (#421) + - Generalizing getPath and adding getFile as PathTraits (#417) + +### Improvements: + - Unified reading/writing attributes and datasets (#450) + - Old compilers have been removed from docker image (#430) + - Cleaning up and improving property lists (#429) + - An example using hdf5 references (#396) (#397) + - Add all property lists alias for completeness (#427) + - Add property CreateIntermediateGroup (#423) + - Add code coverage through codecov.io (#420) + - Introducing GitHub Actions CI (#416) + - Create issue and PR templates (#412) + - Initialize SilenceHDF5 to true in _exist (#411) + - Generalizing xtensor API (#407) + - Minor doc updates (#409) + - Fixing minor error in GH Action (#408) + - Uploading docs to gh-pages using GitHub Actions (#403) + - Various minor documentation updates (#405) + - optional documentation building in cmake (#377) + - From can be automatic now (#384) + - get_dim_vector in inspector (#383) + - Put type_of_array in inspector (#382) + - Move array_dims in the future manipulator (#381) + - Unify interface of H5Attribute with H5Slice_traits (#378) + - Use std::move in NRVO depending of version of GCC (#375) + - Fixed typo '-DD' to '-D' in 'Dependencies'. (#371) + - Changing date format (#364) + +### Bug fixes: + - Fix use before initialization (#414) + - Adding CMake include guard (#389) + +## Version 2.2.2 - 2020-07-30 +### New Features: + - [H5Easy] Adding OpenCV support (#343) + - [H5Easy] Enabling compression & Adding attributes (#337) + - Adding missing function to H5Attribute (#337) + - Add methods to retrieve Node paths or Dataset names and rename objects (#346) + - Add a file with the current version number of HighFive (#349) + +### Improvements + - [H5Easy] Updating error message dump (#335) + - [H5Easy] Switching implementation to partial specialization based on static dispatch (#327) + - Simplifying imports, new policy (#324) + +## Version 2.2.1 - 2020-04-28 +### Improvements + - Add a mechanism to not include target HighFive several times (#336) + - Fix SilenceHDF5 initialization for NodeTraits (#333) + +## Version 2.2 - 2020-03-23 +### New Features: + - Compound Types: API to register and read/write structs (#78). Thanks to Richard Shaw. + - Fixed-length strings. API via char[] and `FixedLenStringArray`(#277) + - Enum data types (#297) + - Datasets of HDF5 References. Support to dereference groups and datasets (#306) + - Objects (hard/soft link) can now be deleted with `unlink` (#284). Thanks to Tom Vander Aa. + - Attributes can be deleted with `deleteAttribute` (#239) + +### Improvements: + - `Attribute`s (metadata) now support additional types (#298) + - H5Easy: Reworked for compatibility with `Eigen::ref` and `Eigen::Map` (#291, #293) + - Hdf5 1.12 compatibility: working `Object::getInfo` and marking getAddress deprecated (#311) + - Strict compatibility with CMake 3.1 and C++11 (#304) + - CMake: Dependencies may be re-detected on FindPackage, fixed export targets and added integration tests (#255, #304, #312, #317) + - Support for array of `Eigen::Matrix` (#258) + - Selection: `ElementSet` working for N-dimensions (#247) + +### Bug Fixes: + - Shortcut syntax with c arrays (#273) + - Compatibility with in MSVC (Exception messages #263 and avoid throwing in `exist` check #308) + +## Version 2.1 - 2019-10-30 +### New Features: + - Inspection: API to get the type of links/objects and datasets data-types (#221) + - H5Easy: API for simple import/export to Eigen and xtensor (#141) + - Support for chunk and deflate configuration at dataset creation/open (#125). Added generic RawPropertyLists. (#157) + - Recursive `createGroup` and `exist` (#152) + - Shortcut syntax: ability to create a filled dataset in a single line (#130) + - DataSet now accepts `std::complex` and `std::array`'s (#128, #129) + +### Improvements: + - Improved compat with MSVC and ICC compilers + - CMake build system: modernized, create exported targets, better messages, etc. + - Building and publishing documentation: https://bluebrain.github.io/HighFive/ + - Several other. See #231 + +### Bug Fixes: + - Fixed header dependencies. They are now all include-able (#225) + - Fixed read/write of N-Dimensional data as nested vectors (#191) + - Fixed data broadcasting for reading (#136) + +## Version 2.0 - 2018-07-19 + - First version with C++11 enforcement + - Support for property list + - Support for Chunking + - Support for Compression / Deflate + - Fix: missing move constructor for properties + - Fix: typo in MPI IO driver + - Fix: several typo fixes + - Fix: Add missing include + +## Version 1.5 - 2018-01-06 + - SliceTraits::read split in two overloads, the first one for plain C arrays + and the second one for other types. + - Add support for complex number + - Add exist() method to the API + - Will be last release before 2.0 and enforcement of C++11 + +## Version 1.4 - 2017-08-25 + - Support id selection for the `select` function + - Suport STL containers of const elements + - Support scalar values and strings management + - Fix attribute assignment issue #40 + - Fix Object assignment operator missing unref (possible memory leak ) + - Introduce SilenceHDF5 for HDF5 error report + - Fix a unit test issue with SilenceHDF5 + +## Version 1.3 - 2017-06-21 + - Minor fixes + +## Version 1.2 - 2017-04-03 + - Add Attribute support for Dataset + - Extend testing of Attribute support + - Fix issue related to multiple definitions in default driver + - Add more examples about attribute support + +## Version 1.1 - 2017-03-23 + - Add support and examples for Parallel HDF5 + - Initial implementation for H5 Properties + - Support for Attributes + - Improve documentation + - Add example for boost.Ublas matrix support + +## Version 1.0 - Init + - Initial release diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveConfig.cmake.in b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveConfig.cmake.in new file mode 100644 index 0000000000..c37fffdf34 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveConfig.cmake.in @@ -0,0 +1,67 @@ +function(copy_interface_properties target source) + foreach(prop + INTERFACE_COMPILE_DEFINITIONS + INTERFACE_COMPILE_FEATURES + INTERFACE_COMPILE_OPTIONS + INTERFACE_INCLUDE_DIRECTORIES + INTERFACE_LINK_LIBRARIES + INTERFACE_SOURCES + INTERFACE_SYSTEM_INCLUDE_DIRECTORIES) + set_property(TARGET ${target} APPEND PROPERTY ${prop} $) + endforeach() +endfunction() + +if(TARGET HighFive) + return() +endif() + +# Get HighFive targets +include("${CMAKE_CURRENT_LIST_DIR}/HighFiveTargets.cmake") + +# Recreate combined HighFive +add_library(HighFive INTERFACE IMPORTED) +set_property(TARGET HighFive APPEND PROPERTY INTERFACE_COMPILE_DEFINITIONS MPI_NO_CPPBIND) # No c++ bindings + +# Ensure we activate required C++ std +if(NOT DEFINED CMAKE_CXX_STANDARD) + if(CMAKE_VERSION VERSION_LESS 3.8) + message(WARNING "HighFive requires minimum C++11. (C++14 for XTensor) \ + You may need to set CMAKE_CXX_STANDARD in you project") + else() + # A client request for a higher std overrides this + target_compile_features(HighFive INTERFACE cxx_std_11) + endif() +endif() + +# If the user sets this flag, all dependencies are preserved. +# Useful in central deployments where dependencies are not prepared later +set(HIGHFIVE_USE_INSTALL_DEPS @HIGHFIVE_USE_INSTALL_DEPS@ CACHE BOOL "Use original Highfive dependencies") +if(HIGHFIVE_USE_INSTALL_DEPS) + # If enabled in the deploy config, request c++14 + if(@HIGHFIVE_USE_XTENSOR@ AND NOT CMAKE_VERSION VERSION_LESS 3.8) + set_property(TARGET HighFive APPEND PROPERTY INTERFACE_COMPILE_FEATURES cxx_std_14) + endif() + message(STATUS "HIGHFIVE @PROJECT_VERSION@: Using original dependencies (HIGHFIVE_USE_INSTALL_DEPS=YES)") + copy_interface_properties(HighFive HighFive_HighFive) + return() +endif() + +# When not using the pre-built dependencies, give user options +if(DEFINED HIGHFIVE_USE_BOOST) + set(HIGHFIVE_USE_BOOST ${HIGHFIVE_USE_BOOST} CACHE BOOL "Enable Boost Support") +else() + set(HIGHFIVE_USE_BOOST @HIGHFIVE_USE_BOOST@ CACHE BOOL "Enable Boost Support") +endif() +set(HIGHFIVE_USE_EIGEN "${HIGHFIVE_USE_EIGEN}" CACHE BOOL "Enable Eigen testing") +set(HIGHFIVE_USE_XTENSOR "${HIGHFIVE_USE_XTENSOR}" CACHE BOOL "Enable xtensor testing") +set(HIGHFIVE_PARALLEL_HDF5 @HIGHFIVE_PARALLEL_HDF5@ CACHE BOOL "Enable Parallel HDF5 support") + +if(HIGHFIVE_USE_XTENSOR AND NOT CMAKE_VERSION VERSION_LESS 3.8) + set_property(TARGET HighFive APPEND PROPERTY INTERFACE_COMPILE_FEATURES cxx_std_14) +endif() + +message(STATUS "HIGHFIVE @PROJECT_VERSION@: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)") +include("${CMAKE_CURRENT_LIST_DIR}/HighFiveTargetDeps.cmake") +foreach(dependency HighFive_libheaders libdeps) + copy_interface_properties(HighFive ${dependency}) +endforeach() diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetDeps.cmake b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetDeps.cmake new file mode 100644 index 0000000000..6f8dbaec56 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetDeps.cmake @@ -0,0 +1,93 @@ +# Link against target system libs +# ------------------------------- + +if(NOT TARGET libdeps) + + # Independent target to make it possible to have new dependencies each build + add_library(libdeps INTERFACE) + + # HDF5 + if(NOT DEFINED HDF5_C_LIBRARIES) + set(HDF5_PREFER_PARALLEL ${HIGHFIVE_PARALLEL_HDF5}) + find_package(HDF5 REQUIRED) + endif() + + if(HIGHFIVE_PARALLEL_HDF5 AND NOT HDF5_IS_PARALLEL) + message(WARNING "Parallel HDF5 requested but libhdf5 doesnt support it") + endif() + + target_include_directories(libdeps SYSTEM INTERFACE ${HDF5_INCLUDE_DIRS}) + target_link_libraries(libdeps INTERFACE ${HDF5_LIBRARIES}) + target_compile_definitions(libdeps INTERFACE ${HDF5_DEFINITIONS}) + + # Boost + if(HIGHFIVE_USE_BOOST) + set(Boost_NO_BOOST_CMAKE TRUE) # Consistency + find_package(Boost REQUIRED COMPONENTS system serialization) + # Dont use imported targets yet, not avail before cmake 3.5 + target_include_directories(libdeps SYSTEM INTERFACE ${Boost_INCLUDE_DIR}) + target_compile_definitions(libdeps INTERFACE BOOST_ALL_NO_LIB H5_USE_BOOST) + endif() + + # Half + if(HIGHFIVE_USE_HALF_FLOAT) + find_file(FOUND_HALF half.hpp) + if (NOT FOUND_HALF) + message(FATAL_ERROR "Half-precision floating-point support requested but file half.hpp not found") + endif() + target_compile_definitions(libdeps INTERFACE H5_USE_HALF_FLOAT) + endif() + + # Eigen + if(HIGHFIVE_USE_EIGEN) + if (NOT EIGEN3_INCLUDE_DIRS) + find_package(Eigen3 NO_MODULE) + if(Eigen3_FOUND) + message(STATUS "Found Eigen ${Eigen3_VERSION}: ${EIGEN3_INCLUDE_DIRS}") + else() + find_package(PkgConfig) + pkg_check_modules(EIGEN3 REQUIRED eigen3) + endif() + endif() + if (NOT EIGEN3_INCLUDE_DIRS) + message(FATAL_ERROR "Eigen was requested but could not be found") + endif() + target_include_directories(libdeps SYSTEM INTERFACE ${EIGEN3_INCLUDE_DIRS}) + target_compile_definitions(libdeps INTERFACE H5_USE_EIGEN) + endif() + + # xtensor + if(HIGHFIVE_USE_XTENSOR) + if (NOT xtensor_INCLUDE_DIRS) + find_package(xtensor REQUIRED) + endif() + if (NOT xtl_INCLUDE_DIRS) + find_package(xtl REQUIRED) + endif() + target_include_directories(libdeps SYSTEM INTERFACE ${xtensor_INCLUDE_DIRS} ${xtl_INCLUDE_DIRS}) + target_compile_definitions(libdeps INTERFACE H5_USE_XTENSOR) + endif() + + # OpenCV + if(HIGHFIVE_USE_OPENCV) + if (NOT OpenCV_INCLUDE_DIRS) + find_package(OpenCV REQUIRED) + endif() + target_include_directories(libdeps SYSTEM INTERFACE ${OpenCV_INCLUDE_DIRS}) + target_link_libraries(libdeps INTERFACE ${OpenCV_LIBS}) + target_compile_definitions(libdeps INTERFACE H5_USE_OPENCV) + endif() + + # MPI + if(HIGHFIVE_PARALLEL_HDF5 OR HDF5_IS_PARALLEL) + find_package(MPI REQUIRED) + target_include_directories(libdeps SYSTEM INTERFACE ${MPI_CXX_INCLUDE_PATH}) + target_link_libraries(libdeps INTERFACE ${MPI_CXX_LIBRARIES}) + if(CMAKE_VERSION VERSION_LESS 3.13) + target_link_libraries(libdeps INTERFACE ${MPI_CXX_LINK_FLAGS}) + else() + target_link_options(libdeps INTERFACE "SHELL:${MPI_CXX_LINK_FLAGS}") + endif() + endif() + +endif() diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetExport.cmake b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetExport.cmake new file mode 100644 index 0000000000..9906f39513 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/HighFiveTargetExport.cmake @@ -0,0 +1,48 @@ + +# Define the HighFive INTERFACE library +add_library(libheaders INTERFACE) + +target_include_directories(libheaders INTERFACE + "$" + "$") + +# Combined HighFive +add_library(HighFive INTERFACE) +target_compile_definitions(HighFive INTERFACE MPI_NO_CPPBIND) # No c++ bindings +target_link_libraries(HighFive INTERFACE libheaders libdeps) + + +# Generate ${PROJECT_NAME}Config.cmake + +include(CMakePackageConfigHelpers) +configure_package_config_file(${CMAKE_CURRENT_LIST_DIR}/HighFiveConfig.cmake.in + ${PROJECT_BINARY_DIR}/${PROJECT_NAME}Config.cmake + INSTALL_DESTINATION share/${PROJECT_NAME}/CMake) + +write_basic_package_version_file( + ${PROJECT_NAME}ConfigVersion.cmake + VERSION ${PROJECT_VERSION} + COMPATIBILITY AnyNewerVersion) + +install(FILES + CMake/HighFiveTargetDeps.cmake + ${PROJECT_BINARY_DIR}/${PROJECT_NAME}Config.cmake + ${PROJECT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake + DESTINATION share/${PROJECT_NAME}/CMake) + + +# Provides IMPORTED targets when using this project from build/install trees. + +# Specify targets to include in the HighFive Exports +install(TARGETS HighFive libheaders libdeps + EXPORT HighFiveTargets) + +# Generate & install the Export for the INSTALL_INTERFACE +install(EXPORT HighFiveTargets + NAMESPACE HighFive_ + FILE HighFiveTargets.cmake + DESTINATION share/${PROJECT_NAME}/CMake) + +# Generate the Export for the BUILD_INTERACE (hardly used) +export(EXPORT HighFiveTargets + FILE "${PROJECT_BINARY_DIR}/HighFiveTargets.cmake") diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/CompilerFlagsHelpers.cmake b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/CompilerFlagsHelpers.cmake new file mode 100644 index 0000000000..e3755ad8c6 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/CompilerFlagsHelpers.cmake @@ -0,0 +1,59 @@ +# CompilerFlagsHelpers.cmake +# +# set of Convenience functions for portable compiler flags +# +# License: BSD 3 +# +# Copyright (c) 2016, Adrien Devresse +# All rights reserved. +# +# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: +# +# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. +# +# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. +# +# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. +# +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + + +set(SUPPORTED_COMPILER_LANGUAGE_LIST "C;CXX") + +foreach(COMPILER_LANGUAGE ${SUPPORTED_COMPILER_LANGUAGE_LIST}) + + # XLC compiler + if(CMAKE_${COMPILER_LANGUAGE}_COMPILER_ID MATCHES "XL") + + # XLC -qinfo=all is awfully verbose on any platforms that use the GNU STL + # Enable by default only the relevant one + set(CMAKE_${COMPILER_LANGUAGE}_WARNING_ALL "-qformat=all -qinfo=lan:trx:ret:zea:cmp:ret") + + ## GCC, CLANG, rest of the world + elseif(CMAKE_${COMPILER_LANGUAGE}_COMPILER_ID MATCHES "Clang" + OR CMAKE_${COMPILER_LANGUAGE}_COMPILER_ID MATCHES "GNU" + OR CMAKE_${COMPILER_LANGUAGE}_COMPILER_ID MATCHES "Intel") + set(CMAKE_${COMPILER_LANGUAGE}_WARNING_ALL " -Wall -Wextra") + string(CONCAT CMAKE_${COMPILER_LANGUAGE}_WARNING_DEBUG + " -Werror -Wshadow -Wnon-virtual-dtor -Wunused -Woverloaded-virtual" + " -Wformat=2 -Wconversion -Wsign-conversion -Wno-error=deprecated-declarations" + ) + if(NOT CMAKE_${COMPILER_LANGUAGE}_COMPILER_IS_ICC) + string(CONCAT CMAKE_${COMPILER_LANGUAGE}_WARNING_DEBUG + ${CMAKE_${COMPILER_LANGUAGE}_WARNING_DEBUG} + " -Wpedantic -Wcast-align -Wdouble-promotion" + ) + endif() + endif() + + if(CMAKE_${COMPILER_LANGUAGE}_COMPILER_ID MATCHES "GNU" + AND (CMAKE_${COMPILER_LANGUAGE}_COMPILER_VERSION VERSION_GREATER "4.7.0")) + set(CMAKE_${COMPILER_LANGUAGE}_WARNING_ALL + "${CMAKE_${COMPILER_LANGUAGE}_WARNING_ALL} -Wno-unused-parameter") + endif() + +endforeach() + + + diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/ReleaseDebugAutoFlags.cmake b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/ReleaseDebugAutoFlags.cmake new file mode 100644 index 0000000000..2b980698eb --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/ReleaseDebugAutoFlags.cmake @@ -0,0 +1,45 @@ +# ReleaseDebugAutoFlags.cmake +# +# Release / Debug configuration helper +# +# License: BSD 3 +# +# Copyright (c) 2016, Adrien Devresse +# All rights reserved. +# +# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: +# +# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. +# +# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. +# +# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. +# +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + + +## default configuration +if(NOT CMAKE_BUILD_TYPE AND (NOT CMAKE_CONFIGURATION_TYPES)) + set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Choose the type of build." FORCE) + message(STATUS "Setting build type to '${CMAKE_BUILD_TYPE}' as none was specified.") +endif() + + +# Different configuration types: +# +# Debug : Optimized for debugging, include symbols +# Release : Release mode, no debuginfo +# RelWithDebInfo : Distribution mode, basic optimizations for potable code with debuginfos + +include(CompilerFlagsHelpers) + + +string(APPEND CMAKE_C_FLAGS_RELEASE "${CMAKE_C_WARNING_ALL}") +string(APPEND CMAKE_C_FLAGS_DEBUG "${CMAKE_C_WARNING_ALL}" "${CMAKE_C_WARNING_DEBUG}") +string(APPEND CMAKE_C_FLAGS_RELWITHDEBINFO "${CMAKE_C_WARNING_ALL}" "${CMAKE_C_WARNING_DEBUG}") + + +string(APPEND CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_WARNING_ALL}") +string(APPEND CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_WARNING_ALL}" "${CMAKE_CXX_WARNING_DEBUG}") +string(APPEND CMAKE_CXX_FLAGS_RELWITHDEBINFO "${CMAKE_CXX_WARNING_ALL}" "${CMAKE_C_WARNING_DEBUG}") diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/TestHelpers.cmake b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/TestHelpers.cmake new file mode 100644 index 0000000000..f3ca1cb741 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMake/config/TestHelpers.cmake @@ -0,0 +1,113 @@ +# TestHelpers.cmake +# +# set of Convenience functions for unit testing with cmake +# +# License: BSD 3 +# +# Copyright (c) 2016, Adrien Devresse +# All rights reserved. +# +# Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: +# +# 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. +# +# 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. +# +# 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. +# +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + + +## +# enable or disable detection of SLURM and MPIEXEC +option(AUTO_TEST_WITH_SLURM "automatically add srun as test prefix in a SLURM environment" TRUE) +option(AUTO_TEST_WITH_MPIEXEC "automatically add mpiexec as test prefix in a MPICH2/OpenMPI environment" TRUE) + +### +## +## Basic SLURM support +## the prefix "srun" is added to any test in the environment +## For a slurm test execution, simply run "salloc [your_exec_parameters] ctest" +## +## +if(AUTO_TEST_WITH_SLURM) + if(NOT DEFINED SLURM_SRUN_COMMAND) + find_program(SLURM_SRUN_COMMAND + NAMES "srun" + HINTS "${SLURM_ROOT}/bin") + endif() + + if(SLURM_SRUN_COMMAND) + set(TEST_EXEC_PREFIX_DEFAULT "${SLURM_SRUN_COMMAND}") + set(TEST_MPI_EXEC_PREFIX_DEFAULT "${SLURM_SRUN_COMMAND}") + set(TEST_MPI_EXEC_BIN_DEFAULT "${SLURM_SRUN_COMMAND}") + set(TEST_WITH_SLURM ON) + message(STATUS " - AUTO_TEST_WITH_SLURM with slurm cmd ${TEST_EXEC_PREFIX_DEFAULT} ") + message(STATUS " -- set test execution prefix to ${TEST_EXEC_PREFIX_DEFAULT} ") + message(STATUS " -- set MPI test execution prefix to ${TEST_MPI_EXEC_PREFIX_DEFAULT} ") + endif() + +endif() + +### +## Basic MPIExec support, will just forward mpiexec as prefix +## +if(AUTO_TEST_WITH_MPIEXEC AND NOT TEST_WITH_SLURM) + + if(NOT DEFINED MPIEXEC) + find_program(MPIEXEC + NAMES "mpiexec" + HINTS "${MPI_ROOT}/bin") + endif() + + + if(MPIEXEC) + set(TEST_MPI_EXEC_PREFIX_DEFAULT "${MPIEXEC}") + set(TEST_MPI_EXEC_BIN_DEFAULT "${MPIEXEC}") + set(TEST_WITH_MPIEXEC ON) + message(STATUS " - AUTO_TEST_WITH_MPIEXEC cmd ${MPIEXEC} ") + message(STATUS " -- set MPI test execution prefix to ${TEST_MPI_EXEC_PREFIX_DEFAULT} ") + + endif() + +endif() + + + +### +## MPI executor program path without arguments used for testing. +## default: srun or mpiexec if found +## +set(TEST_MPI_EXEC_BIN "${TEST_MPI_EXEC_BIN_DEFAULT}" CACHE STRING "path of the MPI executor (mpiexec, mpirun) for test execution") + + + +### +## Test execution prefix. Override this variable for any execution prefix required in clustered environment +## +## To specify manually a command with argument, e.g -DTEST_EXEC_PREFIX="/var/empty/bin/srun;-n;-4" for a srun execution +## with 4 nodes +## +## default: srun if found +## +set(TEST_EXEC_PREFIX "${TEST_EXEC_PREFIX_DEFAULT}" CACHE STRING "prefix command for the test executions") + + + +### +## Test execution prefix specific for MPI programs. +## +## To specify manually a command with argument, use the cmake list syntax. e.g -DTEST_EXEC_PREFIX="/var/empty/bin/mpiexec;-n;-4" for an MPI execution +## with 4 nodes +## +## default: srun or mpiexec if found +## +set(TEST_MPI_EXEC_PREFIX "${TEST_MPI_EXEC_PREFIX_DEFAULT}" CACHE STRING "prefix command for the MPI test executions") + + + + + + + diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMakeLists.txt b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMakeLists.txt new file mode 100644 index 0000000000..27746c2ff6 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/CMakeLists.txt @@ -0,0 +1,124 @@ +cmake_minimum_required(VERSION 3.1) +if(${CMAKE_VERSION} VERSION_LESS 3.13) + cmake_policy(VERSION ${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}) +else() + cmake_policy(VERSION 3.13) +endif() + +project(HighFive VERSION 2.6.2) + +configure_file(${CMAKE_CURRENT_SOURCE_DIR}/include/highfive/H5Version.hpp.in + ${CMAKE_CURRENT_BINARY_DIR}/include/highfive/H5Version.hpp) +# INCLUDES +list(APPEND CMAKE_MODULE_PATH + ${PROJECT_SOURCE_DIR}/CMake + ${PROJECT_SOURCE_DIR}/CMake/portability + ${PROJECT_SOURCE_DIR}/CMake/config) + +# OPTIONS +# Compatibility within Highfive 2.x series +set(USE_BOOST ON CACHE BOOL "Enable Boost Support") +set(USE_EIGEN OFF CACHE BOOL "Enable Eigen testing") +set(USE_XTENSOR OFF CACHE BOOL "Enable xtensor testing") +set(USE_OPENCV OFF CACHE BOOL "Enable OpenCV testing") +mark_as_advanced(USE_BOOST USE_EIGEN USE_XTENSOR) + +set(HIGHFIVE_UNIT_TESTS AUTO CACHE STRING "Enable unit tests (requires Catch2 to be present)") +set_property(CACHE HIGHFIVE_UNIT_TESTS PROPERTY STRINGS AUTO ON OFF) + +option(HIGHFIVE_USE_BOOST "Enable Boost Support" ${USE_BOOST}) +option(HIGHFIVE_USE_HALF_FLOAT "Enable half-precision floats" ${USE_HALF_FLOAT}) +option(HIGHFIVE_USE_EIGEN "Enable Eigen testing" ${USE_EIGEN}) +option(HIGHFIVE_USE_OPENCV "Enable OpenCV testing" ${USE_OPENCV}) +option(HIGHFIVE_USE_XTENSOR "Enable xtensor testing" ${USE_XTENSOR}) +option(HIGHFIVE_EXAMPLES "Compile examples" ON) +option(HIGHFIVE_PARALLEL_HDF5 "Enable Parallel HDF5 support" OFF) +option(HIGHFIVE_BUILD_DOCS "Enable documentation building" ON) + +# In deployments we probably don't want/cant have dynamic dependencies +option(HIGHFIVE_USE_INSTALL_DEPS "End applications by default use detected dependencies here" OFF) +mark_as_advanced(HIGHFIVE_USE_INSTALL_DEPS) + + +# Check compiler cxx_std requirements +# ----------------------------------- + +if(CMAKE_CXX_STANDARD EQUAL 98) + message(FATAL_ERROR "HighFive needs to be compiled with at least C++11") +endif() + +if(NOT DEFINED CMAKE_CXX_STANDARD) + set(CMAKE_CXX_STANDARD 11) + set(CMAKE_CXX_STANDARD_REQUIRED ON) + set(CMAKE_CXX_EXTENSIONS OFF) +endif() + +if(HIGHFIVE_USE_XTENSOR) + set(CMAKE_CXX_STANDARD 14) + set(CMAKE_CXX_STANDARD_REQUIRED ON) +endif() + + +# Search dependencies (hdf5, boost, eigen, xtensor, mpi) and build target highfive_deps +include(${PROJECT_SOURCE_DIR}/CMake/HighFiveTargetDeps.cmake) + +# Set-up HighFive to be used in 3rd party project using exports. Create a HighFive target +include(${PROJECT_SOURCE_DIR}/CMake/HighFiveTargetExport.cmake) + +# Installation of headers (HighFive is only interface) +install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/include/ + DESTINATION "include" + PATTERN "*.in" EXCLUDE) + +# Installation of configured headers +install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/ + DESTINATION "include") + + +# Preparing local building (tests, examples) +# ------------------------------------------ + +# Disable test if Boost was expressly disabled, or if HighFive is a sub-project +if (NOT CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR) + if(HIGHFIVE_UNIT_TESTS) + message(WARNING "Unit tests have been DISABLED.") + endif() + set(HIGHFIVE_UNIT_TESTS FALSE) +endif() + +if(HIGHFIVE_UNIT_TESTS) + if(EXISTS ${CMAKE_CURRENT_LIST_DIR}/deps/catch2/CMakeLists.txt) + add_subdirectory(deps/catch2 EXCLUDE_FROM_ALL) + list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/deps/catch2/contrib) + else() + find_package(Catch2) + if(NOT HIGHFIVE_UNIT_TESTS STREQUAL "AUTO" AND HIGHFIVE_UNIT_TESTS AND NOT Catch2_FOUND) + message(FATAL_ERROR "Please provide a Catch2 installation or clone the submodule") + elseif(NOT Catch2_FOUND) + message(WARNING "No Catch2 installation was found; Disabling unit tests.") + set(HIGHFIVE_UNIT_TESTS OFF) + endif() + endif() +endif() + + +if(CMAKE_CXX_COMPILER_ID MATCHES "Intel") + # ICC gets mad if we shorten "int"s + add_definitions("-wd1682") +endif() + +# Set compile time flags _after_ including required dependencies +include(ReleaseDebugAutoFlags) + +if(HIGHFIVE_EXAMPLES) + add_subdirectory(src/examples) +endif() + +if(HIGHFIVE_UNIT_TESTS) + enable_testing() + add_subdirectory(tests/unit) +endif() + +if(HIGHFIVE_BUILD_DOCS) + add_subdirectory(doc) +endif() diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/LICENSE b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/LICENSE new file mode 100644 index 0000000000..bc1edcab2e --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/LICENSE @@ -0,0 +1,25 @@ +Boost Software License - Version 1.0 - August 17th, 2003 + +Permission is hereby granted, free of charge, to any person or organization +obtaining a copy of the software and accompanying documentation covered by +this license (the "Software") to use, reproduce, display, distribute, +execute, and transmit the Software, and to prepare derivative works of the +Software, and to permit third-parties to whom the Software is furnished to +do so, all subject to the following: + +The copyright notices in the Software and this entire statement, including +the above license grant, this restriction and the following disclaimer, +must be included in all copies of the Software, in whole or in part, and +all derivative works of the Software, unless such copies or derivative +works are solely in the form of machine-executable object code generated by +a source language processor. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT +SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE +FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, +ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER +DEALINGS IN THE SOFTWARE. + + diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/README.md b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/README.md new file mode 100644 index 0000000000..953f534a0c --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/README.md @@ -0,0 +1,225 @@ +# HighFive - HDF5 header-only C++ Library + +[![Build Status](https://travis-ci.org/BlueBrain/HighFive.svg?branch=master)](https://travis-ci.org/BlueBrain/HighFive) +[![Coverity Statys](https://scan.coverity.com/projects/13635/badge.svg)](https://scan.coverity.com/projects/highfive) +[![Doxygen -> gh-pages](https://github.com/BlueBrain/HighFive/workflows/gh-pages/badge.svg)](https://BlueBrain.github.io/HighFive) +[![codecov](https://codecov.io/gh/BlueBrain/HighFive/branch/master/graph/badge.svg?token=UBKxHEn7RS)](https://codecov.io/gh/BlueBrain/HighFive) +[![HighFive_Integration_tests](https://github.com/BlueBrain/HighFive-testing/actions/workflows/integration.yml/badge.svg)](https://github.com/BlueBrain/HighFive-testing/actions/workflows/integration.yml) + +Documentation: https://bluebrain.github.io/HighFive/ + +## Brief + +HighFive is a modern header-only C++11 friendly interface for libhdf5. + +HighFive supports STL vector/string, Boost::UBLAS, Boost::Multi-array, Eigen and Xtensor. It handles C++ from/to HDF5 with automatic type mapping. +HighFive does not require additional libraries (see dependencies) and supports both HDF5 thread safety and Parallel HDF5 (contrary to the official hdf5 cpp) + +It integrates nicely with other CMake projects by defining (and exporting) a HighFive target. + + +### Design +- Simple C++-ish minimalist interface +- No other dependency than libhdf5 +- Zero overhead +- Support C++11 + +### Feature support +- create/read/write files, datasets, attributes, groups, dataspaces. +- automatic memory management / ref counting +- automatic conversion of `std::vector` and nested `std::vector` from/to any dataset with basic types +- automatic conversion of `std::string` to/from variable length string dataset +- selection() / slice support +- parallel Read/Write operations from several nodes with Parallel HDF5 +- Advanced types: Compound, Enum, Arrays of Fixed-length strings, References +- half-precision (16-bit) floating-point datasets +- etc... (see [ChangeLog](./CHANGELOG.md)) + +### Dependencies +- hdf5 (dev) +- hdf5-mpi (optional, opt-in with -D*HIGHFIVE_PARALLEL_HDF5*=ON) +- boost >= 1.41 (recommended, opt-out with -D*HIGHFIVE_USE_BOOST*=OFF) +- eigen3 (optional, opt-in with -D*HIGHFIVE_USE_EIGEN*=ON) +- xtensor (optional, opt-in with -D*HIGHFIVE_USE_XTENSOR*=ON) +- half (optional, opt-in with -D*HIGHFIVE_USE_HALF_FLOAT*=ON) + + +## Examples + +#### Write a std::vector to 1D HDF5 dataset and read it back + +```c++ +#include + +using namespace HighFive; + +std::string filename = "/tmp/new_file.h5"; + +{ + // We create an empty HDF55 file, by truncating an existing + // file if required: + File file(filename, File::Truncate); + + std::vector data(50, 1); + file.createDataSet("grp/data", data); +} + +{ + // We open the file as read-only: + File file(filename, File::ReadOnly); + auto dataset = file.getDataSet("grp/data"); + + // Read back, with allocating: + auto data = dataset.read>(); + + // Because `data` has the correct size, this will + // not cause `data` to be reallocated: + dataset.read(data); +} +``` + +**Note:** `H5File.hpp` is the top-level header of HighFive core which should be always included. + +**Note:** For advanced usecases the dataset can be created without immediately +writing to it. This is common in MPI-IO related patterns, or when growing a +dataset over the course of a simulation. + +#### Write a 2 dimensional C double float array to a 2D HDF5 dataset + +See [create_dataset_double.cpp](src/examples/create_dataset_double.cpp) + +#### Write and read a matrix of double float (boost::ublas) to a 2D HDF5 dataset + +See [boost_ublas_double.cpp](src/examples/boost_ublas_double.cpp) + +#### Write and read a subset of a 2D double dataset + +See [select_partial_dataset_cpp11.cpp](src/examples/select_partial_dataset_cpp11.cpp) + +#### Create, write and list HDF5 attributes + +See [create_attribute_string_integer.cpp](src/examples/create_attribute_string_integer.cpp) + +#### And others + +See [src/examples/](src/examples/) subdirectory for more info. + + +### Compiling with HighFive + +```bash +c++ -o program -I/path/to/highfive/include source.cpp -lhdf5 +``` + +### H5Easy + +For several 'standard' use cases the [highfive/H5Easy.hpp](include/highfive/H5Easy.hpp) interface is available. It allows: + +* Reading/writing in a single line of: + + - scalars (to/from an extendible DataSet), + - strings, + - vectors (of standard types), + - [Eigen::Matrix](http://eigen.tuxfamily.org) (optional, enable CMake option `HIGHFIVE_USE_EIGEN`), + - [xt::xarray](https://github.com/QuantStack/xtensor) and [xt::xtensor](https://github.com/QuantStack/xtensor) + (optional, enable CMake option `HIGHFIVE_USE_XTENSOR`). + - [cv::Mat_](https://docs.opencv.org/master/df/dfc/classcv_1_1Mat__.html) + (optional, enable CMake option `HIGHFIVE_USE_OPENCV`). + +* Getting in a single line: + + - the size of a DataSet, + - the shape of a DataSet. + +#### Example + +```cpp +#include + +int main() { + H5Easy::File file("example.h5", H5Easy::File::Overwrite); + + int A = ...; + H5Easy::dump(file, "/path/to/A", A); + + A = H5Easy::load(file, "/path/to/A"); +} +``` + +whereby the `int` type of this example can be replaced by any of the above types. See [easy_load_dump.cpp](src/examples/easy_load_dump.cpp) for more details. + +**Note:** Classes such as `H5Easy::File` are just short for the regular `HighFive` classes (in this case `HighFive::File`). They can thus be used interchangeably. + + +## CMake integration + +HighFive can easily be used by other C++ CMake projects. + +You may use HighFive from a folder in your project (typically a git submodule). +```cmake +cmake_minimum_required(VERSION 3.1 FATAL_ERROR) +project(foo) +set(CMAKE_CXX_STANDARD 11) + +add_subdirectory(highfive_folder) +add_executable(bar bar.cpp) +target_link_libraries(bar HighFive) +``` + +Alternativelly you can install HighFive once and use it in several projects via `find_package()`. + +A HighFive target will bring the compilation settings to find HighFive headers and all chosen dependencies. + +```cmake +# ... +find_package(HighFive REQUIRED) +add_executable(bar bar.cpp) +target_link_libraries(bar HighFive) +``` +**Note:** Like with other libraries you may need to provide CMake the location to find highfive: `CMAKE_PREFIX_PATH=` + +**Note:** `find_package(HighFive)` will search dependencies as well (e.g. Boost if requested). In order to use the same dependencies found at HighFive install time (e.g. for system deployments) you may set `HIGHFIVE_USE_INSTALL_DEPS=YES` + +### Installing +When installing via CMake, besides the headers, a HighFiveConfig.cmake is generated which provides the HighFive target, as seen before. Note: You may need to set `CMAKE_INSTALL_PREFIX`: +```bash +mkdir build && cd build +# Look up HighFive CMake options, consider inspecting with `ccmake` +cmake .. -DHIGHFIVE_EXAMPLES=OFF -DCMAKE_INSTALL_PREFIX="" +make install +``` + +### Test Compilation +As a header-only library, HighFive doesn't require compilation. You may however build tests and examples. + +```bash +mkdir build && cd build +cmake ../ +make # build tests and examples +make test # build and run unit tests +``` + +**Note:** Unit tests require Boost. In case it's unavailable you may use `-DHIGHFIVE_USE_BOOST=OFF`. +HighFive with disable support for Boost types as well as unit tests (though most examples will build). + +### Code formatting +If you want to propose pull requests to this project, do not forget to format code with +clang-format version 12. +The .clang-format is at the root of the git repository. + +# Questions? + +Do you have questions on how to use HighFive? Would you like to share an interesting example or +discuss HighFive features? Head over to the [Discussions](https://github.com/BlueBrain/HighFive/discussions) +forum and join the community. + +# Funding & Acknowledgment + +The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology. + +Copyright © 2015-2022 Blue Brain Project/EPFL + + +### License + +Boost Software License 1.0 diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/VERSION b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/VERSION new file mode 100644 index 0000000000..b1b25a5ffa --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/VERSION @@ -0,0 +1 @@ +2.2.2 diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/CMakeLists.txt b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/CMakeLists.txt new file mode 100644 index 0000000000..2538af62d2 --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/CMakeLists.txt @@ -0,0 +1,7 @@ +find_package(Doxygen) +if(Doxygen_FOUND) + configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile @ONLY) + add_custom_target(doc COMMAND Doxygen::doxygen ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile) +else() + message(STATUS " Documentation (doc) cannot be built since Doxygen is not available.") +endif() diff --git a/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/Doxyfile b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/Doxyfile new file mode 100644 index 0000000000..52638f15ca --- /dev/null +++ b/externals/coda-oss/modules/drivers/highfive/HighFive-2.6.2/doc/Doxyfile @@ -0,0 +1,2618 @@ +# Doxyfile 1.9.1 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project. +# +# All text after a double hash (##) is considered a comment and is placed in +# front of the TAG it is preceding. +# +# All text after a single hash (#) is considered a comment and will be ignored. +# The format is: +# TAG = value [value, ...] +# For lists, items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (\" \"). + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# This tag specifies the encoding used for all characters in the configuration +# file that follow. The default is UTF-8 which is also the encoding used for all +# text before the first occurrence of this tag. Doxygen uses libiconv (or the +# iconv built into libc) for the transcoding. See +# https://www.gnu.org/software/libiconv/ for the list of possible encodings. +# The default value is: UTF-8. + +DOXYFILE_ENCODING = UTF-8 + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by +# double-quotes, unless you are using Doxywizard) that should identify the +# project for which the documentation is generated. This name is used in the +# title of most generated pages and in a few other places. +# The default value is: My Project. + +PROJECT_NAME = HighFive + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. This +# could be handy for archiving the generated documentation or if some version +# control system is used. + +PROJECT_NUMBER = @PROJECT_VERSION@ + +# Using the PROJECT_BRIEF tag one can provide an optional one line description +# for a project that appears at the top of each page and should give viewer a +# quick idea about the purpose of the project. Keep the description short. + +PROJECT_BRIEF = "HighFive - Header-only C++ HDF5 interface" + +# With the PROJECT_LOGO tag one can specify a logo or an icon that is included +# in the documentation. The maximum height of the logo should not exceed 55 +# pixels and the maximum width should not exceed 200 pixels. Doxygen will copy +# the logo to the output directory. + +PROJECT_LOGO = + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path +# into which the generated documentation will be written. If a relative path is +# entered, it will be relative to the location where doxygen was started. If +# left blank the current directory will be used. + +OUTPUT_DIRECTORY = + +# If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub- +# directories (in 2 levels) under the output directory of each output format and +# will distribute the generated files over these directories. Enabling this +# option can be useful when feeding doxygen a huge amount of source files, where +# putting all generated files in the same directory would otherwise causes +# performance problems for the file system. +# The default value is: NO. + +CREATE_SUBDIRS = NO + +# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII +# characters to appear in the names of generated files. If set to NO, non-ASCII +# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode +# U+3044. +# The default value is: NO. + +ALLOW_UNICODE_NAMES = NO + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Catalan, Chinese, +# Chinese-Traditional, Croatian, Czech, Danish, Dutch, English (United States), +# Esperanto, Farsi (Persian), Finnish, French, German, Greek, Hungarian, +# Indonesian, Italian, Japanese, Japanese-en (Japanese with English messages), +# Korean, Korean-en (Korean with English messages), Latvian, Lithuanian, +# Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese, Romanian, Russian, +# Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish, Swedish, Turkish, +# Ukrainian and Vietnamese. +# The default value is: English. + +OUTPUT_LANGUAGE = English + +# The OUTPUT_TEXT_DIRECTION tag is used to specify the direction in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all generated output in the proper direction. +# Possible values are: None, LTR, RTL and Context. +# The default value is: None. + +OUTPUT_TEXT_DIRECTION = None + +# If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member +# descriptions after the members that are listed in the file and class +# documentation (similar to Javadoc). Set to NO to disable this. +# The default value is: YES. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief +# description of a member or function before the detailed description +# +# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. +# The default value is: YES. + +REPEAT_BRIEF = YES + +# This tag implements a quasi-intelligent brief description abbreviator that is +# used to form the text in various listings. Each string in this list, if found +# as the leading text of the brief description, will be stripped from the text +# and the result, after processing the whole list, is used as the annotated +# text. Otherwise, the brief description is used as-is. If left blank, the +# following values are used ($name is automatically replaced with the name of +# the entity):The $name class, The $name widget, The $name file, is, provides, +# specifies, contains, represents, a, an and the. + +ABBREVIATE_BRIEF = "The $name class" \ + "The $name widget" \ + "The $name file" \ + is \ + provides \ + specifies \ + contains \ + represents \ + a \ + an \ + the + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# doxygen will generate a detailed section even if there is only a brief +# description. +# The default value is: NO. + +ALWAYS_DETAILED_SEC = NO + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all +# inherited members of a class in the documentation of that class as if those +# members were ordinary class members. Constructors, destructors and assignment +# operators of the base classes will not be shown. +# The default value is: NO. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES, doxygen will prepend the full path +# before files name in the file list and in the header files. If set to NO the +# shortest path that makes the file name unique will be used +# The default value is: YES. + +FULL_PATH_NAMES = YES + +# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path. +# Stripping is only done if one of the specified strings matches the left-hand +# part of the path. The tag can be used to show relative paths in the file list. +# If left blank the directory from which doxygen is run is used as the path to +# strip. +# +# Note that you can specify absolute paths here, but also relative paths, which +# will be relative from the directory where doxygen is started. +# This tag requires that the tag FULL_PATH_NAMES is set to YES. + +STRIP_FROM_PATH = @CMAKE_CURRENT_SOURCE_DIR@/../include + +# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the +# path mentioned in the documentation of a class, which tells the reader which +# header file to include in order to use a class. If left blank only the name of +# the header file containing the class definition is used. Otherwise one should +# specify the list of include paths that are normally passed to the compiler +# using the -I flag. + +STRIP_FROM_INC_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but +# less readable) file names. This can be useful is your file systems doesn't +# support long names like on DOS, Mac, or CD-ROM. +# The default value is: NO. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the +# first line (until the first dot) of a Javadoc-style comment as the brief +# description. If set to NO, the Javadoc-style will behave just like regular Qt- +# style comments (thus requiring an explicit @brief command for a brief +# description.) +# The default value is: NO. + +JAVADOC_AUTOBRIEF = NO + +# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line +# such as +# /*************** +# as being the beginning of a Javadoc-style comment "banner". If set to NO, the +# Javadoc-style will behave just like regular comments and it will not be +# interpreted by doxygen. +# The default value is: NO. + +JAVADOC_BANNER = NO + +# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first +# line (until the first dot) of a Qt-style comment as the brief description. If +# set to NO, the Qt-style will behave just like regular Qt-style comments (thus +# requiring an explicit \brief command for a brief description.) +# The default value is: NO. + +QT_AUTOBRIEF = NO + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a +# multi-line C++ special comment block (i.e. a block of //! or /// comments) as +# a brief description. This used to be the default behavior. The new default is +# to treat a multi-line C++ comment block as a detailed description. Set this +# tag to YES if you prefer the old behavior instead. +# +# Note that setting this tag to YES also means that rational rose comments are +# not recognized any more. +# The default value is: NO. + +MULTILINE_CPP_IS_BRIEF = NO + +# By default Python docstrings are displayed as preformatted text and doxygen's +# special commands cannot be used. By setting PYTHON_DOCSTRING to NO the +# doxygen's special commands can be used and the contents of the docstring +# documentation blocks is shown as doxygen documentation. +# The default value is: YES. + +PYTHON_DOCSTRING = YES + +# If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the +# documentation from any documented member that it re-implements. +# The default value is: YES. + +INHERIT_DOCS = YES + +# If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new +# page for each member. If set to NO, the documentation of a member will be part +# of the file/class/namespace that contains it. +# The default value is: NO. + +SEPARATE_MEMBER_PAGES = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen +# uses this value to replace tabs by spaces in code fragments. +# Minimum value: 1, maximum value: 16, default value: 4. + +TAB_SIZE = 4 + +# This tag can be used to specify a number of aliases that act as commands in +# the documentation. An alias has the form: +# name=value +# For example adding +# "sideeffect=@par Side Effects:\n" +# will allow you to put the command \sideeffect (or @sideeffect) in the +# documentation, which will result in a user-defined paragraph with heading +# "Side Effects:". You can put \n's in the value part of an alias to insert +# newlines (in the resulting output). You can put ^^ in the value part of an +# alias to insert a newline as if a physical newline was in the original file. +# When you need a literal { or } or , in the value part of an alias you have to +# escape them by means of a backslash (\), this can lead to conflicts with the +# commands \{ and \} for these it is advised to use the version @{ and @} or use +# a double escape (\\{ and \\}) + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources +# only. Doxygen will then generate output that is more tailored for C. For +# instance, some of the names that are used will be different. The list of all +# members will be omitted, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_FOR_C = NO + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or +# Python sources only. Doxygen will then generate output that is more tailored +# for that language. For instance, namespaces will be presented as packages, +# qualified scopes will look different, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_JAVA = NO + +# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran +# sources. Doxygen will then generate output that is tailored for Fortran. +# The default value is: NO. + +OPTIMIZE_FOR_FORTRAN = NO + +# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL +# sources. Doxygen will then generate output that is tailored for VHDL. +# The default value is: NO. + +OPTIMIZE_OUTPUT_VHDL = NO + +# Set the OPTIMIZE_OUTPUT_SLICE tag to YES if your project consists of Slice +# sources only. Doxygen will then generate output that is more tailored for that +# language. For instance, namespaces will be presented as modules, types will be +# separated into more groups, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_SLICE = NO + +# Doxygen selects the parser to use depending on the extension of the files it +# parses. With this tag you can assign which parser to use for a given +# extension. Doxygen has a built-in mapping, but you can override or extend it +# using this tag. The format is ext=language, where ext is a file extension, and +# language is one of the parsers supported by doxygen: IDL, Java, JavaScript, +# Csharp (C#), C, C++, D, PHP, md (Markdown), Objective-C, Python, Slice, VHDL, +# Fortran (fixed format Fortran: FortranFixed, free formatted Fortran: +# FortranFree, unknown formatted Fortran: Fortran. In the later case the parser +# tries to guess whether the code is fixed or free formatted code, this is the +# default for Fortran type files). For instance to make doxygen treat .inc files +# as Fortran files (default is PHP), and .f files as C (default is Fortran), +# use: inc=Fortran f=C. +# +# Note: For files without extension you can use no_extension as a placeholder. +# +# Note that for custom extensions you also need to set FILE_PATTERNS otherwise +# the files are not read by doxygen. When specifying no_extension you should add +# * to the FILE_PATTERNS. +# +# Note see also the list of default file extension mappings. + +EXTENSION_MAPPING = + +# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments +# according to the Markdown format, which allows for more readable +# documentation. See https://daringfireball.net/projects/markdown/ for details. +# The output of markdown processing is further processed by doxygen, so you can +# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in +# case of backward compatibilities issues. +# The default value is: YES. + +MARKDOWN_SUPPORT = YES + +# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up +# to that level are automatically included in the table of contents, even if +# they do not have an id attribute. +# Note: This feature currently applies only to Markdown headings. +# Minimum value: 0, maximum value: 99, default value: 5. +# This tag requires that the tag MARKDOWN_SUPPORT is set to YES. + +TOC_INCLUDE_HEADINGS = 0 + +# When enabled doxygen tries to link words that correspond to documented +# classes, or namespaces to their corresponding documentation. Such a link can +# be prevented in individual cases by putting a % sign in front of the word or +# globally by setting AUTOLINK_SUPPORT to NO. +# The default value is: YES. + +AUTOLINK_SUPPORT = YES + +# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want +# to include (a tag file for) the STL sources as input, then you should set this +# tag to YES in order to let doxygen match functions declarations and +# definitions whose arguments contain STL classes (e.g. func(std::string); +# versus func(std::string) {}). This also make the inheritance and collaboration +# diagrams that involve STL classes more complete and accurate. +# The default value is: NO. + +BUILTIN_STL_SUPPORT = NO + +# If you use Microsoft's C++/CLI language, you should set this option to YES to +# enable parsing support. +# The default value is: NO. + +CPP_CLI_SUPPORT = NO + +# Set the SIP_SUPPORT tag to YES if your project consists of sip (see: +# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen +# will parse them like normal C++ but will assume all classes use public instead +# of private inheritance when no explicit protection keyword is present. +# The default value is: NO. + +SIP_SUPPORT = NO + +# For Microsoft's IDL there are propget and propput attributes to indicate +# getter and setter methods for a property. Setting this option to YES will make +# doxygen to replace the get and set methods by a property in the documentation. +# This will only work if the methods are indeed getting or setting a simple +# type. If this is not the case, or you want to show the methods anyway, you +# should set this option to NO. +# The default value is: YES. + +IDL_PROPERTY_SUPPORT = YES + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. +# The default value is: NO. + +DISTRIBUTE_GROUP_DOC = NO + +# If one adds a struct or class to a group and this option is enabled, then also +# any nested class or struct is added to the same group. By default this option +# is disabled and one has to add nested compounds explicitly via \ingroup. +# The default value is: NO. + +GROUP_NESTED_COMPOUNDS = NO + +# Set the SUBGROUPING tag to YES to allow class member groups of the same type +# (for instance a group of public functions) to be put as a subgroup of that +# type (e.g. under the Public Functions section). Set it to NO to prevent +# subgrouping. Alternatively, this can be done per class using the +# \nosubgrouping command. +# The default value is: YES. + +SUBGROUPING = YES + +# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions +# are shown inside the group in which they are included (e.g. using \ingroup) +# instead of on a separate page (for HTML and Man pages) or section (for LaTeX +# and RTF). +# +# Note that this feature does not work in combination with +# SEPARATE_MEMBER_PAGES. +# The default value is: NO. + +INLINE_GROUPED_CLASSES = NO + +# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions +# with only public data fields or simple typedef fields will be shown inline in +# the documentation of the scope in which they are defined (i.e. file, +# namespace, or group documentation), provided this scope is documented. If set +# to NO, structs, classes, and unions are shown on a separate page (for HTML and +# Man pages) or section (for LaTeX and RTF). +# The default value is: NO. + +INLINE_SIMPLE_STRUCTS = NO + +# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or +# enum is documented as struct, union, or enum with the name of the typedef. So +# typedef struct TypeS {} TypeT, will appear in the documentation as a struct +# with name TypeT. When disabled the typedef will appear as a member of a file, +# namespace, or class. And the struct will be named TypeS. This can typically be +# useful for C code in case the coding convention dictates that all compound +# types are typedef'ed and only the typedef is referenced, never the tag name. +# The default value is: NO. + +TYPEDEF_HIDES_STRUCT = NO + +# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This +# cache is used to resolve symbols given their name and scope. Since this can be +# an expensive process and often the same symbol appears multiple times in the +# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small +# doxygen will become slower. If the cache is too large, memory is wasted. The +# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range +# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536 +# symbols. At the end of a run doxygen will report the cache usage and suggest +# the optimal cache size from a speed point of view. +# Minimum value: 0, maximum value: 9, default value: 0. + +LOOKUP_CACHE_SIZE = 0 + +# The NUM_PROC_THREADS specifies the number threads doxygen is allowed to use +# during processing. When set to 0 doxygen will based this on the number of +# cores available in the system. You can set it explicitly to a value larger +# than 0 to get more control over the balance between CPU load and processing +# speed. At this moment only the input processing can be done using multiple +# threads. Since this is still an experimental feature the default is set to 1, +# which efficively disables parallel processing. Please report any issues you +# encounter. Generating dot graphs in parallel is controlled by the +# DOT_NUM_THREADS setting. +# Minimum value: 0, maximum value: 32, default value: 1. + +NUM_PROC_THREADS = 1 + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in +# documentation are documented, even if no documentation was available. Private +# class members and static file members will be hidden unless the +# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES. +# Note: This will also disable the warnings about undocumented members that are +# normally produced when WARNINGS is set to YES. +# The default value is: NO. + +EXTRACT_ALL = YES + +# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will +# be included in the documentation. +# The default value is: NO. + +EXTRACT_PRIVATE = NO + +# If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual +# methods of a class will be included in the documentation. +# The default value is: NO. + +EXTRACT_PRIV_VIRTUAL = NO + +# If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal +# scope will be included in the documentation. +# The default value is: NO. + +EXTRACT_PACKAGE = NO + +# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be +# included in the documentation. +# The default value is: NO. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined +# locally in source files will be included in the documentation. If set to NO, +# only classes defined in header files are included. Does not have any effect +# for Java sources. +# The default value is: YES. + +EXTRACT_LOCAL_CLASSES = YES + +# This flag is only useful for Objective-C code. If set to YES, local methods, +# which are defined in the implementation section but not in the interface are +# included in the documentation. If set to NO, only methods in the interface are +# included. +# The default value is: NO. + +EXTRACT_LOCAL_METHODS = NO + +# If this flag is set to YES, the members of anonymous namespaces will be +# extracted and appear in the documentation as a namespace called +# 'anonymous_namespace{file}', where file will be replaced with the base name of +# the file that contains the anonymous namespace. By default anonymous namespace +# are hidden. +# The default value is: NO. + +EXTRACT_ANON_NSPACES = NO + +# If this flag is set to YES, the name of an unnamed parameter in a declaration +# will be determined by the corresponding definition. By default unnamed +# parameters remain unnamed in the output. +# The default value is: YES. + +RESOLVE_UNNAMED_PARAMS = YES + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all +# undocumented members inside documented classes or files. If set to NO these +# members will be included in the various overviews, but no documentation +# section is generated. This option has no effect if EXTRACT_ALL is enabled. +# The default value is: NO. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. If set +# to NO, these classes will be included in the various overviews. This option +# has no effect if EXTRACT_ALL is enabled. +# The default value is: NO. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend +# declarations. If set to NO, these declarations will be included in the +# documentation. +# The default value is: NO. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any +# documentation blocks found inside the body of a function. If set to NO, these +# blocks will be appended to the function's detailed documentation block. +# The default value is: NO. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation that is typed after a +# \internal command is included. If the tag is set to NO then the documentation +# will be excluded. Set it to YES to include the internal documentation. +# The default value is: NO. + +INTERNAL_DOCS = NO + +# With the correct setting of option CASE_SENSE_NAMES doxygen will better be +# able to match the capabilities of the underlying filesystem. In case the +# filesystem is case sensitive (i.e. it supports files in the same directory +# whose names only differ in casing), the option must be set to YES to properly +# deal with such files in case they appear in the input. For filesystems that +# are not case sensitive the option should be be set to NO to properly deal with +# output files written for symbols that only differ in casing, such as for two +# classes, one named CLASS and the other named Class, and to also support +# references to files without having to specify the exact matching casing. On +# Windows (including Cygwin) and MacOS, users should typically set this option +# to NO, whereas on Linux or other Unix flavors it should typically be set to +# YES. +# The default value is: system dependent. + +CASE_SENSE_NAMES = NO + +# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with +# their full class and namespace scopes in the documentation. If set to YES, the +# scope will be hidden. +# The default value is: NO. + +HIDE_SCOPE_NAMES = NO + +# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will +# append additional text to a page's title, such as Class Reference. If set to +# YES the compound reference will be hidden. +# The default value is: NO. + +HIDE_COMPOUND_REFERENCE= NO + +# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of +# the files that are included by a file in the documentation of that file. +# The default value is: YES. + +SHOW_INCLUDE_FILES = YES + +# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each +# grouped member an include statement to the documentation, telling the reader +# which file to include in order to use the member. +# The default value is: NO. + +SHOW_GROUPED_MEMB_INC = NO + +# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include +# files with double quotes in the documentation rather than with sharp brackets. +# The default value is: NO. + +FORCE_LOCAL_INCLUDES = NO + +# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the +# documentation for inline members. +# The default value is: YES. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the +# (detailed) documentation of file and class members alphabetically by member +# name. If set to NO, the members will appear in declaration order. +# The default value is: YES. + +SORT_MEMBER_DOCS = YES + +# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief +# descriptions of file, namespace and class members alphabetically by member +# name. If set to NO, the members will appear in declaration order. Note that +# this will also influence the order of the classes in the class list. +# The default value is: NO. + +SORT_BRIEF_DOCS = NO + +# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the +# (brief and detailed) documentation of class members so that constructors and +# destructors are listed first. If set to NO the constructors will appear in the +# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS. +# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief +# member documentation. +# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting +# detailed member documentation. +# The default value is: NO. + +SORT_MEMBERS_CTORS_1ST = NO + +# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy +# of group names into alphabetical order. If set to NO the group names will +# appear in their defined order. +# The default value is: NO. + +SORT_GROUP_NAMES = NO + +# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by +# fully-qualified names, including namespaces. If set to NO, the class list will +# be sorted only by class name, not including the namespace part. +# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. +# Note: This option applies only to the class list, not to the alphabetical +# list. +# The default value is: NO. + +SORT_BY_SCOPE_NAME = NO + +# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper +# type resolution of all parameters of a function it will reject a match between +# the prototype and the implementation of a member function even if there is +# only one candidate or it is obvious which candidate to choose by doing a +# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still +# accept a match between prototype and implementation in such cases. +# The default value is: NO. + +STRICT_PROTO_MATCHING = NO + +# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo +# list. This list is created by putting \todo commands in the documentation. +# The default value is: YES. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test +# list. This list is created by putting \test commands in the documentation. +# The default value is: YES. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug +# list. This list is created by putting \bug commands in the documentation. +# The default value is: YES. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO) +# the deprecated list. This list is created by putting \deprecated commands in +# the documentation. +# The default value is: YES. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional documentation +# sections, marked by \if ... \endif and \cond +# ... \endcond blocks. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the +# initial value of a variable or macro / define can have for it to appear in the +# documentation. If the initializer consists of more lines than specified here +# it will be hidden. Use a value of 0 to hide initializers completely. The +# appearance of the value of individual variables and macros / defines can be +# controlled using \showinitializer or \hideinitializer command in the +# documentation regardless of this setting. +# Minimum value: 0, maximum value: 10000, default value: 30. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at +# the bottom of the documentation of classes and structs. If set to YES, the +# list will mention the files that were used to generate the documentation. +# The default value is: YES. + +SHOW_USED_FILES = YES + +# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This +# will remove the Files entry from the Quick Index and from the Folder Tree View +# (if specified). +# The default value is: YES. + +SHOW_FILES = YES + +# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces +# page. This will remove the Namespaces entry from the Quick Index and from the +# Folder Tree View (if specified). +# The default value is: YES. + +SHOW_NAMESPACES = YES + +# The FILE_VERSION_FILTER tag can be used to specify a program or script that +# doxygen should invoke to get the current version for each file (typically from +# the version control system). Doxygen will invoke the program by executing (via +# popen()) the command command input-file, where command is the value of the +# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided +# by doxygen. Whatever the program writes to standard output is used as the file +# version. For an example see the documentation. + +FILE_VERSION_FILTER = + +# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed +# by doxygen. The layout file controls the global structure of the generated +# output files in an output format independent way. To create the layout file +# that represents doxygen's defaults, run doxygen with the -l option. You can +# optionally specify a file name after the option, if omitted DoxygenLayout.xml +# will be used as the name of the layout file. +# +# Note that if you run doxygen from a directory containing a file called +# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE +# tag is left empty. + +LAYOUT_FILE = @CMAKE_CURRENT_SOURCE_DIR@/DoxygenLayout.xml + +# The CITE_BIB_FILES tag can be used to specify one or more bib files containing +# the reference definitions. This must be a list of .bib files. The .bib +# extension is automatically appended if omitted. This requires the bibtex tool +# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info. +# For LaTeX the style of the bibliography can be controlled using +# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the +# search path. See also \cite for info how to create references. + +CITE_BIB_FILES = + +#--------------------------------------------------------------------------- +# Configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated to +# standard output by doxygen. If QUIET is set to YES this implies that the +# messages are off. +# The default value is: NO. + +QUIET = YES + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES +# this implies that the warnings are on. +# +# Tip: Turn warnings on while writing the documentation. +# The default value is: YES. + +WARNINGS = YES + +# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate +# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag +# will automatically be disabled. +# The default value is: YES. + +WARN_IF_UNDOCUMENTED = YES + +# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some parameters +# in a documented function, or documenting parameters that don't exist or using +# markup commands wrongly. +# The default value is: YES. + +WARN_IF_DOC_ERROR = YES + +# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that +# are documented, but have no documentation for their parameters or return +# value. If set to NO, doxygen will only warn about wrong or incomplete +# parameter documentation, but not about the absence of documentation. If +# EXTRACT_ALL is set to YES then this flag will automatically be disabled. +# The default value is: NO. + +WARN_NO_PARAMDOC = NO + +# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when +# a warning is encountered. If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS +# then doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but +# at the end of the doxygen process doxygen will return with a non-zero status. +# Possible values are: NO, YES and FAIL_ON_WARNINGS. +# The default value is: NO. + +WARN_AS_ERROR = NO + +# The WARN_FORMAT tag determines the format of the warning messages that doxygen +# can produce. The string should contain the $file, $line, and $text tags, which +# will be replaced by the file and line number from which the warning originated +# and the warning text. Optionally the format may contain $version, which will +# be replaced by the version of the file (if it could be obtained via +# FILE_VERSION_FILTER) +# The default value is: $file:$line: $text. + +WARN_FORMAT = "$file:$line: $text" + +# The WARN_LOGFILE tag can be used to specify a file to which warning and error +# messages should be written. If left blank the output is written to standard +# error (stderr). + +WARN_LOGFILE = + +#--------------------------------------------------------------------------- +# Configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag is used to specify the files and/or directories that contain +# documented source files. You may enter file names like myfile.cpp or +# directories like /usr/src/myproject. Separate the files or directories with +# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING +# Note: If this tag is empty the current directory is searched. + +INPUT = @CMAKE_CURRENT_SOURCE_DIR@/../include \ + @CMAKE_CURRENT_SOURCE_DIR@/mainpage.md + +# This tag can be used to specify the character encoding of the source files +# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses +# libiconv (or the iconv built into libc) for the transcoding. See the libiconv +# documentation (see: +# https://www.gnu.org/software/libiconv/) for the list of possible encodings. +# The default value is: UTF-8. + +INPUT_ENCODING = UTF-8 + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and +# *.h) to filter out the source-files in the directories. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# read by doxygen. +# +# Note the list of default checked file patterns might differ from the list of +# default file extension mappings. +# +# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp, +# *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h, +# *.hh, *.hxx, *.hpp, *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc, +# *.m, *.markdown, *.md, *.mm, *.dox (to be provided as doxygen C comment), +# *.py, *.pyw, *.f90, *.f95, *.f03, *.f08, *.f18, *.f, *.for, *.vhd, *.vhdl, +# *.ucf, *.qsf and *.ice. + +FILE_PATTERNS = *.c \ + *.cc \ + *.cxx \ + *.cpp \ + *.c++ \ + *.java \ + *.ii \ + *.ixx \ + *.ipp \ + *.i++ \ + *.inl \ + *.idl \ + *.ddl \ + *.odl \ + *.h \ + *.hh \ + *.hxx \ + *.hpp \ + *.h++ \ + *.cs \ + *.d \ + *.php \ + *.php4 \ + *.php5 \ + *.phtml \ + *.inc \ + *.m \ + *.markdown \ + *.md \ + *.mm \ + *.dox \ + *.py \ + *.pyw \ + *.f90 \ + *.f95 \ + *.f03 \ + *.f08 \ + *.f \ + *.for \ + *.tcl \ + *.vhd \ + *.vhdl \ + *.ucf \ + *.qsf + +# The RECURSIVE tag can be used to specify whether or not subdirectories should +# be searched for input files as well. +# The default value is: NO. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should be +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. +# +# Note that relative paths are relative to the directory from which doxygen is +# run. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or +# directories that are symbolic links (a Unix file system feature) are excluded +# from the input. +# The default value is: NO. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. +# +# Note that the wildcards are matched against the file with absolute path, so to +# exclude all test directories for example use the pattern */test/* + +EXCLUDE_PATTERNS = + +# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names +# (namespaces, classes, functions, etc.) that should be excluded from the +# output. The symbol name can be a fully qualified name, a word, or if the +# wildcard * is used, a substring. Examples: ANamespace, AClass, +# AClass::ANamespace, ANamespace::*Test +# +# Note that the wildcards are matched against the file with absolute path, so to +# exclude all test directories use the pattern */test/* + +EXCLUDE_SYMBOLS = *detail* + +# The EXAMPLE_PATH tag can be used to specify one or more files or directories +# that contain example code fragments that are included (see the \include +# command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and +# *.h) to filter out the source-files in the directories. If left blank all +# files are included. + +EXAMPLE_PATTERNS = * + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude commands +# irrespective of the value of the RECURSIVE tag. +# The default value is: NO. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or directories +# that contain images that are to be included in the documentation (see the +# \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command: +# +# +# +# where is the value of the INPUT_FILTER tag, and is the +# name of an input file. Doxygen will then use the output that the filter +# program writes to standard output. If FILTER_PATTERNS is specified, this tag +# will be ignored. +# +# Note that the filter must not add or remove lines; it is applied before the +# code is scanned, but not when the output code is generated. If lines are added +# or removed, the anchors will not be placed correctly. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# properly processed by doxygen. + +INPUT_FILTER = + +# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern +# basis. Doxygen will compare the file name with each pattern and apply the +# filter if there is a match. The filters are a list of the form: pattern=filter +# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how +# filters are used. If the FILTER_PATTERNS tag is empty or if none of the +# patterns match the file name, INPUT_FILTER is applied. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# properly processed by doxygen. + +FILTER_PATTERNS = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will also be used to filter the input files that are used for +# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES). +# The default value is: NO. + +FILTER_SOURCE_FILES = NO + +# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file +# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and +# it is also possible to disable source filtering for a specific pattern using +# *.ext= (so without naming a filter). +# This tag requires that the tag FILTER_SOURCE_FILES is set to YES. + +FILTER_SOURCE_PATTERNS = + +# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that +# is part of the input, its contents will be placed on the main page +# (index.html). This can be useful if you have a project on for instance GitHub +# and want to reuse the introduction page also for the doxygen output. + +USE_MDFILE_AS_MAINPAGE = + +#--------------------------------------------------------------------------- +# Configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will be +# generated. Documented entities will be cross-referenced with these sources. +# +# Note: To get rid of all source code in the generated output, make sure that +# also VERBATIM_HEADERS is set to NO. +# The default value is: NO. + +SOURCE_BROWSER = NO + +# Setting the INLINE_SOURCES tag to YES will include the body of functions, +# classes and enums directly into the documentation. +# The default value is: NO. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any +# special comment blocks from generated source code fragments. Normal C, C++ and +# Fortran comments will always remain visible. +# The default value is: YES. + +STRIP_CODE_COMMENTS = YES + +# If the REFERENCED_BY_RELATION tag is set to YES then for each documented +# entity all documented functions referencing it will be listed. +# The default value is: NO. + +REFERENCED_BY_RELATION = NO + +# If the REFERENCES_RELATION tag is set to YES then for each documented function +# all documented entities called/used by that function will be listed. +# The default value is: NO. + +REFERENCES_RELATION = NO + +# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set +# to YES then the hyperlinks from functions in REFERENCES_RELATION and +# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will +# link to the documentation. +# The default value is: YES. + +REFERENCES_LINK_SOURCE = YES + +# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the +# source code will show a tooltip with additional information such as prototype, +# brief description and links to the definition and documentation. Since this +# will make the HTML file larger and loading of large files a bit slower, you +# can opt to disable this feature. +# The default value is: YES. +# This tag requires that the tag SOURCE_BROWSER is set to YES. + +SOURCE_TOOLTIPS = YES + +# If the USE_HTAGS tag is set to YES then the references to source code will +# point to the HTML generated by the htags(1) tool instead of doxygen built-in +# source browser. The htags tool is part of GNU's global source tagging system +# (see https://www.gnu.org/software/global/global.html). You will need version +# 4.8.6 or higher. +# +# To use it do the following: +# - Install the latest version of global +# - Enable SOURCE_BROWSER and USE_HTAGS in the configuration file +# - Make sure the INPUT points to the root of the source tree +# - Run doxygen as normal +# +# Doxygen will invoke htags (and that will in turn invoke gtags), so these +# tools must be available from the command line (i.e. in the search path). +# +# The result: instead of the source browser generated by doxygen, the links to +# source code will now point to the output of htags. +# The default value is: NO. +# This tag requires that the tag SOURCE_BROWSER is set to YES. + +USE_HTAGS = NO + +# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a +# verbatim copy of the header file for each class for which an include is +# specified. Set to NO to disable this. +# See also: Section \class. +# The default value is: YES. + +VERBATIM_HEADERS = YES + +#--------------------------------------------------------------------------- +# Configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all +# compounds will be generated. Enable this if the project contains a lot of +# classes, structs, unions or interfaces. +# The default value is: YES. + +ALPHABETICAL_INDEX = YES + +# In case all classes in a project start with a common prefix, all classes will +# be put under the same header in the alphabetical index. The IGNORE_PREFIX tag +# can be used to specify a prefix (or a list of prefixes) that should be ignored +# while generating the index headers. +# This tag requires that the tag ALPHABETICAL_INDEX is set to YES. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output +# The default value is: YES. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a +# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of +# it. +# The default directory is: html. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_OUTPUT = html + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each +# generated HTML page (for example: .htm, .php, .asp). +# The default value is: .html. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a user-defined HTML header file for +# each generated HTML page. If the tag is left blank doxygen will generate a +# standard header. +# +# To get valid HTML the header file that includes any scripts and style sheets +# that doxygen needs, which is dependent on the configuration options used (e.g. +# the setting GENERATE_TREEVIEW). It is highly recommended to start with a +# default header using +# doxygen -w html new_header.html new_footer.html new_stylesheet.css +# YourConfigFile +# and then modify the file new_header.html. See also section "Doxygen usage" +# for information on how to generate the default header that doxygen normally +# uses. +# Note: The header is subject to change so you typically have to regenerate the +# default header when upgrading to a newer version of doxygen. For a description +# of the possible markers and block names see the documentation. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each +# generated HTML page. If the tag is left blank doxygen will generate a standard +# footer. See HTML_HEADER for more information on how to generate a default +# footer and what special commands can be used inside the footer. See also +# section "Doxygen usage" for information on how to generate the default footer +# that doxygen normally uses. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style +# sheet that is used by each HTML page. It can be used to fine-tune the look of +# the HTML output. If left blank doxygen will generate a default style sheet. +# See also section "Doxygen usage" for information on how to generate the style +# sheet that doxygen normally uses. +# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as +# it is more robust and this tag (HTML_STYLESHEET) will in the future become +# obsolete. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_STYLESHEET = + +# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined +# cascading style sheets that are included after the standard style sheets +# created by doxygen. Using this option one can overrule certain style aspects. +# This is preferred over using HTML_STYLESHEET since it does not replace the +# standard style sheet and is therefore more robust against future updates. +# Doxygen will copy the style sheet files to the output directory. +# Note: The order of the extra style sheet files is of importance (e.g. the last +# style sheet in the list overrules the setting of the previous ones in the +# list). For an example see the documentation. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_EXTRA_STYLESHEET = @CMAKE_CURRENT_SOURCE_DIR@/doxygen-awesome-css/doxygen-awesome.css + +# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or +# other source files which should be copied to the HTML output directory. Note +# that these files will be copied to the base HTML output directory. Use the +# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these +# files. In the HTML_STYLESHEET file, use the file name only. Also note that the +# files will be copied as-is; there are no commands or markers available. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_EXTRA_FILES = + +# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen +# will adjust the colors in the style sheet and background images according to +# this color. Hue is specified as an angle on a colorwheel, see +# https://en.wikipedia.org/wiki/Hue for more information. For instance the value +# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300 +# purple, and 360 is red again. +# Minimum value: 0, maximum value: 359, default value: 220. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_HUE = 220 + +# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors +# in the HTML output. For a value of 0 the output will use grayscales only. A +# value of 255 will produce the most vivid colors. +# Minimum value: 0, maximum value: 255, default value: 100. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_SAT = 100 + +# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the +# luminance component of the colors in the HTML output. Values below 100 +# gradually make the output lighter, whereas values above 100 make the output +# darker. The value divided by 100 is the actual gamma applied, so 80 represents +# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not +# change the gamma. +# Minimum value: 40, maximum value: 240, default value: 80. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_GAMMA = 80 + +# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML +# page will contain the date and time when the page was generated. Setting this +# to YES can help to show when doxygen was last run and thus if the +# documentation is up to date. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_TIMESTAMP = NO + +# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML +# documentation will contain a main index with vertical navigation menus that +# are dynamically created via JavaScript. If disabled, the navigation index will +# consists of multiple levels of tabs that are statically embedded in every HTML +# page. Disable this option to support browsers that do not have JavaScript, +# like the Qt help browser. +# The default value is: YES. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_DYNAMIC_MENUS = YES + +# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML +# documentation will contain sections that can be hidden and shown after the +# page has loaded. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_DYNAMIC_SECTIONS = NO + +# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries +# shown in the various tree structured indices initially; the user can expand +# and collapse entries dynamically later on. Doxygen will expand the tree to +# such a level that at most the specified number of entries are visible (unless +# a fully collapsed tree already exceeds this amount). So setting the number of +# entries 1 will produce a full collapsed tree by default. 0 is a special value +# representing an infinite number of entries and will result in a full expanded +# tree by default. +# Minimum value: 0, maximum value: 9999, default value: 100. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_INDEX_NUM_ENTRIES = 100 + +# If the GENERATE_DOCSET tag is set to YES, additional index files will be +# generated that can be used as input for Apple's Xcode 3 integrated development +# environment (see: +# https://developer.apple.com/xcode/), introduced with OSX 10.5 (Leopard). To +# create a documentation set, doxygen will generate a Makefile in the HTML +# output directory. Running make will produce the docset in that directory and +# running make install will install the docset in +# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at +# startup. See https://developer.apple.com/library/archive/featuredarticles/Doxy +# genXcode/_index.html for more information. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_DOCSET = NO + +# This tag determines the name of the docset feed. A documentation feed provides +# an umbrella under which multiple documentation sets from a single provider +# (such as a company or product suite) can be grouped. +# The default value is: Doxygen generated docs. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_FEEDNAME = "Doxygen generated docs" + +# This tag specifies a string that should uniquely identify the documentation +# set bundle. This should be a reverse domain-name style string, e.g. +# com.mycompany.MyDocSet. Doxygen will append .docset to the name. +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_BUNDLE_ID = org.doxygen.Project + +# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify +# the documentation publisher. This should be a reverse domain-name style +# string, e.g. com.mycompany.MyDocSet.documentation. +# The default value is: org.doxygen.Publisher. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_PUBLISHER_ID = org.doxygen.Publisher + +# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher. +# The default value is: Publisher. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_PUBLISHER_NAME = Publisher + +# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three +# additional HTML index files: index.hhp, index.hhc, and index.hhk. The +# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop +# (see: +# https://www.microsoft.com/en-us/download/details.aspx?id=21138) on Windows. +# +# The HTML Help Workshop contains a compiler that can convert all HTML output +# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML +# files are now used as the Windows 98 help format, and will replace the old +# Windows help format (.hlp) on all Windows platforms in the future. Compressed +# HTML files also contain an index, a table of contents, and you can search for +# words in the documentation. The HTML workshop also contains a viewer for +# compressed HTML files. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_HTMLHELP = NO + +# The CHM_FILE tag can be used to specify the file name of the resulting .chm +# file. You can add a path in front of the file if the result should not be +# written to the html output directory. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +CHM_FILE = + +# The HHC_LOCATION tag can be used to specify the location (absolute path +# including file name) of the HTML help compiler (hhc.exe). If non-empty, +# doxygen will try to run the HTML help compiler on the generated index.hhp. +# The file has to be specified with full path. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +HHC_LOCATION = + +# The GENERATE_CHI flag controls if a separate .chi index file is generated +# (YES) or that it should be included in the main .chm file (NO). +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +GENERATE_CHI = NO + +# The CHM_INDEX_ENCODING is used to encode HtmlHelp index (hhk), content (hhc) +# and project file content. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +CHM_INDEX_ENCODING = + +# The BINARY_TOC flag controls whether a binary table of contents is generated +# (YES) or a normal table of contents (NO) in the .chm file. Furthermore it +# enables the Previous and Next buttons. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members to +# the table of contents of the HTML help documentation and to the tree view. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +TOC_EXPAND = NO + +# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and +# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that +# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help +# (.qch) of the generated HTML documentation. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_QHP = NO + +# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify +# the file name of the resulting .qch file. The path specified is relative to +# the HTML output folder. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QCH_FILE = + +# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help +# Project output. For more information please see Qt Help Project / Namespace +# (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#namespace). +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_NAMESPACE = org.doxygen.Project + +# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt +# Help Project output. For more information please see Qt Help Project / Virtual +# Folders (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#virtual-folders). +# The default value is: doc. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_VIRTUAL_FOLDER = doc + +# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom +# filter to add. For more information please see Qt Help Project / Custom +# Filters (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_CUST_FILTER_NAME = + +# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the +# custom filter to add. For more information please see Qt Help Project / Custom +# Filters (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_CUST_FILTER_ATTRS = + +# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this +# project's filter section matches. Qt Help Project / Filter Attributes (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#filter-attributes). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_SECT_FILTER_ATTRS = + +# The QHG_LOCATION tag can be used to specify the location (absolute path +# including file name) of Qt's qhelpgenerator. If non-empty doxygen will try to +# run qhelpgenerator on the generated .qhp file. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHG_LOCATION = + +# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be +# generated, together with the HTML files, they form an Eclipse help plugin. To +# install this plugin and make it available under the help contents menu in +# Eclipse, the contents of the directory containing the HTML and XML files needs +# to be copied into the plugins directory of eclipse. The name of the directory +# within the plugins directory should be the same as the ECLIPSE_DOC_ID value. +# After copying Eclipse needs to be restarted before the help appears. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_ECLIPSEHELP = NO + +# A unique identifier for the Eclipse help plugin. When installing the plugin +# the directory name containing the HTML and XML files should also have this +# name. Each documentation set should have its own identifier. +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES. + +ECLIPSE_DOC_ID = org.doxygen.Project + +# If you want full control over the layout of the generated HTML pages it might +# be necessary to disable the index and replace it with your own. The +# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top +# of each HTML page. A value of NO enables the index and the value YES disables +# it. Since the tabs in the index contain the same information as the navigation +# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +DISABLE_INDEX = NO + +# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index +# structure should be generated to display hierarchical information. If the tag +# value is set to YES, a side panel will be generated containing a tree-like +# index structure (just like the one that is generated for HTML Help). For this +# to work a browser that supports JavaScript, DHTML, CSS and frames is required +# (i.e. any modern browser). Windows users are probably better off using the +# HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can +# further fine-tune the look of the index. As an example, the default style +# sheet generated by doxygen has an example that shows how to put an image at +# the root of the tree instead of the PROJECT_NAME. Since the tree basically has +# the same information as the tab index, you could consider setting +# DISABLE_INDEX to YES when enabling this option. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_TREEVIEW = YES + +# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that +# doxygen will group on one line in the generated HTML documentation. +# +# Note that a value of 0 will completely suppress the enum values from appearing +# in the overview section. +# Minimum value: 0, maximum value: 20, default value: 4. +# This tag requires that the tag GENERATE_HTML is set to YES. + +ENUM_VALUES_PER_LINE = 4 + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used +# to set the initial width (in pixels) of the frame in which the tree is shown. +# Minimum value: 0, maximum value: 1500, default value: 250. +# This tag requires that the tag GENERATE_HTML is set to YES. + +TREEVIEW_WIDTH = 250 + +# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to +# external symbols imported via tag files in a separate window. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +EXT_LINKS_IN_WINDOW = NO + +# If the HTML_FORMULA_FORMAT option is set to svg, doxygen will use the pdf2svg +# tool (see https://github.com/dawbarton/pdf2svg) or inkscape (see +# https://inkscape.org) to generate formulas as SVG images instead of PNGs for +# the HTML output. These images will generally look nicer at scaled resolutions. +# Possible values are: png (the default) and svg (looks nicer but requires the +# pdf2svg or inkscape tool). +# The default value is: png. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FORMULA_FORMAT = png + +# Use this tag to change the font size of LaTeX formulas included as images in +# the HTML documentation. When you change the font size after a successful +# doxygen run you need to manually remove any form_*.png images from the HTML +# output directory to force them to be regenerated. +# Minimum value: 8, maximum value: 50, default value: 10. +# This tag requires that the tag GENERATE_HTML is set to YES. + +FORMULA_FONTSIZE = 10 + +# Use the FORMULA_TRANSPARENT tag to determine whether or not the images +# generated for formulas are transparent PNGs. Transparent PNGs are not +# supported properly for IE 6.0, but are supported on all modern browsers. +# +# Note that when changing this option you need to delete any form_*.png files in +# the HTML output directory before the changes have effect. +# The default value is: YES. +# This tag requires that the tag GENERATE_HTML is set to YES. + +FORMULA_TRANSPARENT = YES + +# The FORMULA_MACROFILE can contain LaTeX \newcommand and \renewcommand commands +# to create new LaTeX commands to be used in formulas as building blocks. See +# the section "Including formulas" for details. + +FORMULA_MACROFILE = + +# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see +# https://www.mathjax.org) which uses client side JavaScript for the rendering +# instead of using pre-rendered bitmaps. Use this if you do not have LaTeX +# installed or if you want to formulas look prettier in the HTML output. When +# enabled you may also need to install MathJax separately and configure the path +# to it using the MATHJAX_RELPATH option. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +USE_MATHJAX = NO + +# When MathJax is enabled you can set the default output format to be used for +# the MathJax output. See the MathJax site (see: +# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. +# Possible values are: HTML-CSS (which is slower, but has the best +# compatibility), NativeMML (i.e. MathML) and SVG. +# The default value is: HTML-CSS. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_FORMAT = HTML-CSS + +# When MathJax is enabled you need to specify the location relative to the HTML +# output directory using the MATHJAX_RELPATH option. The destination directory +# should contain the MathJax.js script. For instance, if the mathjax directory +# is located at the same level as the HTML output directory, then +# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax +# Content Delivery Network so you can quickly see the result without installing +# MathJax. However, it is strongly recommended to install a local copy of +# MathJax from https://www.mathjax.org before deployment. +# The default value is: https://cdn.jsdelivr.net/npm/mathjax@2. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_RELPATH = http://cdn.mathjax.org/mathjax/latest + +# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax +# extension names that should be enabled during MathJax rendering. For example +# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_EXTENSIONS = + +# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces +# of code that will be used on startup of the MathJax code. See the MathJax site +# (see: +# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. For an +# example see the documentation. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_CODEFILE = + +# When the SEARCHENGINE tag is enabled doxygen will generate a search box for +# the HTML output. The underlying search engine uses javascript and DHTML and +# should work on any modern browser. Note that when using HTML help +# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET) +# there is already a search function so this one should typically be disabled. +# For large projects the javascript based search engine can be slow, then +# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to +# search using the keyboard; to jump to the search box use + S +# (what the is depends on the OS and browser, but it is typically +# , /