CITATION.cff

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.2.2
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "geoChronR" in publications use:'
type: software
license: MIT
title: 'geoChronR: Tools to Analyze and Visualize Time-Uncertain Data'
version: 1.1.6
abstract: Time uncertain chronology developement and analysis, including correlation,
  regression, spectral, and PCA for paleogeoscientific data.
authors:
- family-names: McKay
  given-names: Nicholas
  email: nick@nau.edu
  orcid: https://orcid.org/0000-0003-3598-5113
- family-names: Emile-Geay
  given-names: Julien
  orcid: https://orcid.org/0000-0001-5920-4751
- family-names: Khider
  given-names: Deborah
  orcid: https://orcid.org/0000-0001-7501-8430
preferred-citation:
  type: manual
  title: 'geoChronR: Tools to Analyze and Visualize Time-Uncertain Data'
  authors:
  - family-names: McKay
    given-names: Nicholas
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  - family-names: Emile-Geay
    given-names: Julien
    orcid: https://orcid.org/0000-0001-5920-4751
  - family-names: Khider
    given-names: Deborah
    orcid: https://orcid.org/0000-0001-7501-8430
  version: 1.1.6
  abstract: Time uncertain chronology developement and analysis, including correlation,
    regression, spectral, and PCA for paleogeoscientific data.
  repository-code: https://github.com/nickmckay/GeoChronR
  url: https://github.com/nickmckay/GeoChronR
  date-released: '2021-02-01'
  contact:
  - family-names: McKay
    given-names: Nicholas
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  license: MIT
  year: '2021'
repository-code: https://github.com/nickmckay/GeoChronR
url: https://github.com/nickmckay/GeoChronR
date-released: '2021-02-01'
contact:
- family-names: McKay
  given-names: Nicholas
  email: nick@nau.edu
  orcid: https://orcid.org/0000-0003-3598-5113
references:
- type: software
  title: Bchron
  abstract: 'Bchron: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
    Estimation, and Non-Parametric Phase Modelling'
  notes: Imports
  authors:
  - family-names: Parnell
    given-names: Andrew
    email: Andrew.Parnell@mu.ie
  year: '2022'
  url: https://CRAN.R-project.org/package=Bchron
- type: software
  title: RColorBrewer
  abstract: 'RColorBrewer: ColorBrewer Palettes'
  notes: Imports
  authors:
  - family-names: Neuwirth
    given-names: Erich
    email: erich.neuwirth@univie.ac.at
  year: '2022'
  url: https://CRAN.R-project.org/package=RColorBrewer
- type: software
  title: arsenal
  abstract: 'arsenal: An Arsenal of ''R'' Functions for Large-Scale Statistical Summaries'
  notes: Imports
  authors:
  - family-names: Heinzen
    given-names: Ethan
    email: heinzen.ethan@mayo.edu
  - family-names: Sinnwell
    given-names: Jason
  - family-names: Atkinson
    given-names: Elizabeth
  - family-names: Gunderson
    given-names: Tina
  - family-names: Dougherty
    given-names: Gregory
  year: '2022'
  url: https://CRAN.R-project.org/package=arsenal
- type: software
  title: dplR
  abstract: 'dplR: Dendrochronology Program Library in R'
  notes: Imports
  authors:
  - family-names: Bunn
    given-names: Andy
    email: bunna@wwu.edu
  - family-names: Korpela
    given-names: Mikko
  - family-names: Biondi
    given-names: Franco
  - family-names: Campelo
    given-names: Filipe
  - family-names: Mérian
    given-names: Pierre
  - family-names: Qeadan
    given-names: Fares
  - family-names: Zang
    given-names: Christian
  year: '2022'
  url: https://CRAN.R-project.org/package=dplR
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2022'
  url: https://CRAN.R-project.org/package=dplyr
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@rstudio.com
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  year: '2022'
  url: https://CRAN.R-project.org/package=ggplot2
- type: software
  title: ggthemes
  abstract: 'ggthemes: Extra Themes, Scales and Geoms for ''ggplot2'''
  notes: Imports
  authors:
  - family-names: Arnold
    given-names: Jeffrey B.
    email: jeffrey.arnold@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=ggthemes
- type: software
  title: ggmap
  abstract: 'ggmap: Spatial Visualization with ggplot2'
  notes: Imports
  authors:
  - family-names: Kahle
    given-names: David
    email: david@kahle.io
    orcid: https://orcid.org/0000-0002-9999-1558
  - family-names: Wickham
    given-names: Hadley
    email: h.wickham@gmail.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Jackson
    given-names: Scott
    email: scottmmjackson@gmail.com
  year: '2022'
  url: https://github.com/dkahle/ggmap
- type: software
  title: grDevices
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2022'
  url: https://www.R-project.org/
  institution:
    name: R Foundation for Statistical Computing
- type: software
  title: grid
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2022'
  url: https://www.R-project.org/
  institution:
    name: R Foundation for Statistical Computing
- type: software
  title: lomb
  abstract: 'lomb: Lomb-Scargle Periodogram'
  notes: Imports
  authors:
  - family-names: Ruf
    given-names: Thomas
  - family-names: al.
    given-names: partially based on C original by Press et
  - family-names: Astropy.
    given-names: the Python module
  year: '2022'
  url: https://CRAN.R-project.org/package=lomb
- type: software
  title: mapproj
  abstract: 'mapproj: Map Projections'
  notes: Imports
  authors:
  - family-names: Brownrigg
    given-names: Doug McIlroy. Packaged for R by Ray
  - family-names: Minka
    given-names: Thomas P
  - family-names: Bivand.
    given-names: transition to Plan 9 codebase by Roger
  year: '2022'
  url: https://CRAN.R-project.org/package=mapproj
- type: software
  title: maps
  abstract: 'maps: Draw Geographical Maps'
  notes: Imports
  authors:
  - family-names: Becker
    given-names: Original S code by Richard A.
  - family-names: Minka
    given-names: Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas
      P
  - family-names: Deckmyn.
    given-names: Alex
  year: '2022'
  url: https://CRAN.R-project.org/package=maps
- type: software
  title: rbacon
  abstract: 'rbacon: Age-Depth Modelling using Bayesian Statistics'
  notes: Imports
  authors:
  - family-names: Blaauw
    given-names: Maarten
    email: maarten.blaauw@qub.ac.uk
    orcid: https://orcid.org/0000-0002-5680-1515
  - family-names: Christen
    given-names: J. Andres
    email: jac@cimat.mx
    orcid: https://orcid.org/0000-0002-5795-4345
  - family-names: Aquino Lopez
    given-names: Marco A.
    email: aquino@cimat.mx
  year: '2022'
  url: https://CRAN.R-project.org/package=rbacon
- type: software
  title: reshape2
  abstract: 'reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: h.wickham@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=reshape2
- type: software
  title: scales
  abstract: 'scales: Scale Functions for Visualization'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Seidel
    given-names: Dana
  year: '2022'
  url: https://CRAN.R-project.org/package=scales
- type: software
  title: tibble
  abstract: 'tibble: Simple Data Frames'
  notes: Imports
  authors:
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=tibble
- type: software
  title: ggridges
  abstract: 'ggridges: Ridgeline Plots in ''ggplot2'''
  notes: Imports
  authors:
  - family-names: Wilke
    given-names: Claus O.
    email: wilke@austin.utexas.edu
    orcid: https://orcid.org/0000-0002-7470-9261
  year: '2022'
  url: https://CRAN.R-project.org/package=ggridges
- type: software
  title: gridExtra
  abstract: 'gridExtra: Miscellaneous Functions for "Grid" Graphics'
  notes: Imports
  authors:
  - family-names: Auguie
    given-names: Baptiste
    email: baptiste.auguie@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=gridExtra
- type: software
  title: purrr
  abstract: 'purrr: Functional Programming Tools'
  notes: Imports
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@rstudio.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=purrr
- type: software
  title: matrixStats
  abstract: 'matrixStats: Functions that Apply to Rows and Columns of Matrices (and
    to Vectors)'
  notes: Imports
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: henrikb@braju.com
  year: '2022'
  url: https://CRAN.R-project.org/package=matrixStats
- type: software
  title: pcaMethods
  abstract: 'pcaMethods: A collection of PCA methods'
  notes: Imports
  authors:
  - family-names: Stacklies
    given-names: Wolfram
  - family-names: Redestig
    given-names: Henning
  - family-names: Wright
    given-names: Kevin
  year: '2022'
  url: https://github.com/hredestig/pcamethods
- type: software
  title: pbapply
  abstract: 'pbapply: Adding Progress Bar to ''*apply'' Functions'
  notes: Imports
  authors:
  - family-names: Solymos
    given-names: Peter
  - family-names: Zawadzki
    given-names: Zygmunt
  year: '2022'
  url: https://CRAN.R-project.org/package=pbapply
- type: software
  title: oxcAAR
  abstract: 'oxcAAR: Interface to ''OxCal'' Radiocarbon Calibration'
  notes: Imports
  authors:
  - family-names: Martin
    given-names: Hinz
    email: martin.hinz@iaw.unibe.ch
  - family-names: Schmid
    given-names: Clemens
    email: clemens@nevrome.de
  - family-names: Knitter
    given-names: Daniel
    email: knitter@geographie.uni-kiel.de
  - family-names: Tietze
    given-names: Carolin
    email: Carolin Tietze <ctietze1991@gmail.com>
  year: '2022'
  url: https://CRAN.R-project.org/package=oxcAAR
- type: software
  title: Hmisc
  abstract: 'Hmisc: Harrell Miscellaneous'
  notes: Imports
  authors:
  - family-names: Harrell Jr
    given-names: Frank E
    email: fh@fharrell.com
    orcid: https://orcid.org/0000-0002-8271-5493
  year: '2022'
  url: https://CRAN.R-project.org/package=Hmisc
- type: software
  title: glue
  abstract: 'glue: Interpreted String Literals'
  notes: Imports
  authors:
  - family-names: Hester
    given-names: Jim
    orcid: https://orcid.org/0000-0002-2739-7082
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2022'
  url: https://CRAN.R-project.org/package=glue
- type: software
  title: BiocManager
  abstract: 'BiocManager: Access the Bioconductor Project Package Repository'
  notes: Imports
  authors:
  - family-names: Morgan
    given-names: Martin
    email: martin.morgan@roswellpark.org
    orcid: https://orcid.org/0000-0002-5874-8148
  year: '2022'
  url: https://CRAN.R-project.org/package=BiocManager
- type: software
  title: rEDM
  abstract: 'rEDM: Empirical Dynamic Modeling (''EDM'')'
  notes: Imports
  authors:
  - family-names: Park
    given-names: Joseph
    email: JosephPark@IEEE.org
    orcid: https://orcid.org/0000-0001-5411-1409
  - family-names: Smith
    given-names: Cameron
    email: cos008@ucsd.edu
    orcid: https://orcid.org/0000-0003-0020-5607
  - family-names: Sugihara
    given-names: George
    orcid: https://orcid.org/0000-0002-2863-6946
  - family-names: Deyle
    given-names: Ethan
    orcid: https://orcid.org/0000-0001-8704-8434
  year: '2022'
  url: https://CRAN.R-project.org/package=rEDM
- type: software
  title: inline
  abstract: 'inline: Functions to Inline C, C++, Fortran Function Calls from R'
  notes: Imports
  authors:
  - family-names: Sklyar
    given-names: Oleg
  - family-names: Murdoch
    given-names: Duncan
  - family-names: Smith
    given-names: Mike
  - family-names: Eddelbuettel
    given-names: Dirk
  - family-names: Francois
    given-names: Romain
  - family-names: Soetaert
    given-names: Karline
  - family-names: Ranke
    given-names: Johannes
  year: '2022'
  url: https://CRAN.R-project.org/package=inline
- type: software
  title: bindrcpp
  abstract: 'bindrcpp: An ''Rcpp'' Interface to Active Bindings'
  notes: Imports
  authors:
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2022'
  url: https://CRAN.R-project.org/package=bindrcpp
- type: software
  title: geosphere
  abstract: 'geosphere: Spherical Trigonometry'
  notes: Imports
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=geosphere
- type: software
  title: proto
  abstract: 'proto: Prototype Object-Based Programming'
  notes: Imports
  authors:
  - family-names: Grothendieck
    given-names: Gabor
    email: ggrothendieck@gmail.com
  - family-names: Kates
    given-names: Louis
  - family-names: Petzoldt
    given-names: Thomas
  year: '2022'
  url: https://CRAN.R-project.org/package=proto
- type: software
  title: crayon
  abstract: 'crayon: Colored Terminal Output'
  notes: Imports
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=crayon
- type: software
  title: tidyr
  abstract: 'tidyr: Tidy Messy Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Girlich
    given-names: Maximilian
  year: '2022'
  url: https://CRAN.R-project.org/package=tidyr
- type: software
  title: magrittr
  abstract: 'magrittr: A Forward-Pipe Operator for R'
  notes: Imports
  authors:
  - family-names: Bache
    given-names: Stefan Milton
    email: stefan@stefanbache.dk
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=magrittr
- type: software
  title: astrochron
  abstract: 'astrochron: A Computational Tool for Astrochronology'
  notes: Imports
  authors:
  - family-names: Meyers
    given-names: Stephen
  - family-names: Malinverno
    given-names: Alberto
  - family-names: Hinnov
    given-names: Linda
  - family-names: Zeeden
    given-names: Christian
  - family-names: Liu
    given-names: Huaran
  - family-names: Moron
    given-names: Vincent
  year: '2022'
  url: https://CRAN.R-project.org/package=astrochron
- type: software
  title: spatstat.core
  abstract: 'spatstat.core: Core Functionality of the ''spatstat'' Family'
  notes: Imports
  authors:
  - family-names: Baddeley
    given-names: Adrian
    email: Adrian.Baddeley@curtin.edu.au
  - family-names: Turner
    given-names: Rolf
    email: r.turner@auckland.ac.nz
  - family-names: Rubak
    given-names: Ege
    email: rubak@math.aau.dk
  year: '2022'
  url: https://CRAN.R-project.org/package=spatstat.core
- type: software
  title: MASS
  abstract: 'MASS: Support Functions and Datasets for Venables and Ripley''s MASS'
  notes: Imports
  authors:
  - family-names: Ripley
    given-names: Brian
    email: ripley@stats.ox.ac.uk
  year: '2022'
  url: https://CRAN.R-project.org/package=MASS
- type: software
  title: plyr
  abstract: 'plyr: Tools for Splitting, Applying and Combining Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=plyr
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=stringr
- type: software
  title: readr
  abstract: 'readr: Read Rectangular Text Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Hester
    given-names: Jim
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2022'
  url: https://CRAN.R-project.org/package=readr
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2022'
  url: https://CRAN.R-project.org/package=knitr
- type: software
  title: lipdR
  abstract: 'lipdR: LiPD utilities for R'
  notes: Suggests
  authors:
  - family-names: McKay
    given-names: Nick
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  - family-names: Heiser
    given-names: Chris
    email: heiser@nau.edu
  year: '2022'
- type: software
  title: neotoma2
  abstract: 'neotoma2: Working with the Neotoma Paleoecology Database'
  notes: Suggests
  authors:
  - family-names: Socorro
    given-names: Dominguez Vidana
    email: sedv8808@gmail.com
    orcid: https://orcid.org/0000-0002-7926-4935
  - family-names: Goring
    given-names: Simon
    email: goring@wisc.edu
    orcid: https://orcid.org/0000-0002-2700-4605
  year: '2022'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@rstudio.com
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@rstudio.com
  - family-names: Luraschi
    given-names: Javier
    email: javier@rstudio.com
  - family-names: Ushey
    given-names: Kevin
    email: kevin@rstudio.com
  - family-names: Atkins
    given-names: Aron
    email: aron@rstudio.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Cheng
    given-names: Joe
    email: joe@rstudio.com
  - family-names: Chang
    given-names: Winston
    email: winston@rstudio.com
  - family-names: Iannone
    given-names: Richard
    email: rich@rstudio.com
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2022'
  url: https://CRAN.R-project.org/package=rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=testthat