From a1a721411fcb06c9a9d4ed7fe1fe4134c127ae4c Mon Sep 17 00:00:00 2001 From: Niema Moshiri Date: Fri, 1 Sep 2023 12:56:07 -0700 Subject: [PATCH] Update README.md --- README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/README.md b/README.md index 9fea048..47493f1 100644 --- a/README.md +++ b/README.md @@ -48,3 +48,8 @@ usage: favites_lite.py [-h] -c CONFIG -o OUTPUT [--overwrite] [--quiet] [--versi ## Scripts To aid with common downstream analyses, you can find some helper scripts in the [`scripts`](scripts) folder of this repository. The scripts will be organized by step(s) of the FAVITES-Lite simulation workflow, and each subdirectory will have a README describing the scripts in that folder. + +# Citing FAVITES-Lite +We are currently working on a manuscript for FAVITES-Lite. For now, if you use FAVITES-Lite in your work, please cite the original FAVITES paper: + +> **Moshiri N**, Ragonnet-Cronin M, Wertheim JO, Mirarab S (2018). "FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences." *Bioinformatics*. 35(11):1852-1861. [doi:10.1093/bioinformatics/bty921](https://doi.org/10.1093/bioinformatics/bty921)