diff --git a/mriqc/interfaces/functional.py b/mriqc/interfaces/functional.py index f510c481..39d34ead 100644 --- a/mriqc/interfaces/functional.py +++ b/mriqc/interfaces/functional.py @@ -361,7 +361,7 @@ def _run_interface(self, runtime): # DVARS dvars = pd.read_csv( self.inputs.dvars, - delim_whitespace=True, + sep=r'\s+', skiprows=1, # column names have spaces header=None, names=['dvars_std', 'dvars_nstd', 'dvars_vstd'], @@ -369,16 +369,14 @@ def _run_interface(self, runtime): dvars.index = pd.RangeIndex(1, timeseries.index.max() + 1) # FD - fd = pd.read_csv( - self.inputs.fd, delim_whitespace=True, header=0, names=['framewise_displacement'] - ) + fd = pd.read_csv(self.inputs.fd, sep=r'\s+', header=0, names=['framewise_displacement']) fd.index = pd.RangeIndex(1, timeseries.index.max() + 1) # AQI - aqi = pd.read_csv(self.inputs.quality, delim_whitespace=True, header=None, names=['aqi']) + aqi = pd.read_csv(self.inputs.quality, sep=r'\s+', header=None, names=['aqi']) # Outliers - aor = pd.read_csv(self.inputs.outliers, delim_whitespace=True, header=None, names=['aor']) + aor = pd.read_csv(self.inputs.outliers, sep=r'\s+', header=None, names=['aor']) timeseries = pd.concat((timeseries, dvars, fd, aqi, aor), axis=1)