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Hi, I tried to run the pipeline using singularity with option 1 but with no luck, please see attached log:
[2024-06-30 21:31:45] ===== Welcome, welcome to modPhred pipeline! ===== [2024-06-30 21:31:45] Connecting to: soft/ont-guppy/bin/guppy_basecall_server:5555 ... [mem: 150 MB] [2024-06-30 21:31:45] Encoding modification info from 1 directories... [mem: 150 MB] [2024-06-30 21:31:45] /mnt/storage/HEK293T/HEK293T-WT-rep1/fast5s/ with 261 Fast5 file(s)... [mem: 150 MB] multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/opt/miniforge3/envs/python3.7/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/mnt/modPhred/src/guppy_encode_live.py", line 105, in basecalling_worker client = GuppyClientBase(config_name=config, host=host, port=port, **kwargs) File "/opt/miniforge3/envs/python3.7/lib/python3.7/site-packages/pyguppyclient/client.py", line 35, in __init__ self.socket.connect("tcp://%s:%s" % (host, port)) File "zmq/backend/cython/socket.pyx", line 580, in zmq.backend.cython.socket.Socket.connect File "zmq/backend/cython/checkrc.pxd", line 25, in zmq.backend.cython.checkrc._check_rc zmq.error.ZMQError: Invalid argument """
The text was updated successfully, but these errors were encountered:
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Hi,
I tried to run the pipeline using singularity with option 1 but with no luck, please see attached log:
The text was updated successfully, but these errors were encountered: